| Definition | Prochlorococcus marinus str. MIT 9312, complete genome. |
|---|---|
| Accession | NC_007577 |
| Length | 1,709,204 |
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The map label for this gene is dnaG
Identifier: 78779244
GI number: 78779244
Start: 795516
End: 797549
Strand: Direct
Name: dnaG
Synonym: PMT9312_0860
Alternate gene names: 78779244
Gene position: 795516-797549 (Clockwise)
Preceding gene: 78779238
Following gene: 78779250
Centisome position: 46.54
GC content: 28.96
Gene sequence:
>2034_bases ATGGTTCATTCTATACACCCAAGAACTATTCAAGAGGTTAAAGAAAAGGCAGATATTGTTGACGTTATATCTGAACATAT TGTTTTAAAGAAGAAAGGCAAGGAATTTGTTGGGATTTGCCCTTTTCATGATGATAATAAGCCATCTATGACAGTATCAC CTAGTAAACAATTCTATTATTGTTTTTCTTGTGGTGCTGGTGGTAACTCTATTAAATTTTTAATGGAATTTACTCGTGCA AATTTTTCAGATGTTGTACTTTCTCTCGCTAAAAAAAATAATATTAATGTTGAAAATCTCGAGGGTCCCCAAGTAGAAGC TTATAAAAAACAATTATCTAGAAAGGAAGAGCTTTATAAAATATTAAGAGTCACTAAAAATTGGTTTAAGTCTCAATTAA ATAATTCTCTTGGTGTTGAAGCTATGAAATATTTAACATCAAAGAGAAACTTGAGTAAGAAGATTATTGATAATTTTGAA TTAGGTTTTGCCCCAAATTCATGGAATGATTTATTCAACTATCTATCCAAGGTAGAAAAATTTCCTATTAATTTAATATT AGCTTCAGGCCTTGCAATTTCTAAAGATAATTCGGATAAGATTTATGATCGTTTTAGAAATAGATTAATTGTTCCAATAC ATGATATGCAGGGAAGAGTAGTTGCTTTTGGTGGAAGATCTCTTGATGGTCAGGAACCTAAATACCTTAATTCTCCTGAA TCAGAGATATTTGAAAAGGGCAAAATGTTGTTTGCATTCGAAAAAGCTTCTAGCAATATTAGGAAAAGAGATAAAGCTAT TCTTGTTGAAGGCTACTTTGATGTTATTTCTCTTCATTCAAAGGGGATTACTAATTCTGTTGCCTCTCTGGGTACCGCAT TAAATAAGTATCAAATTTCTCAACTTTGCAGATGTACAGATAATAAAAACATAATTTTGAATTTTGATTCTGATAATGCT GGAATTTTAGCTACGAAAAGAGTAATAAAAGAAGTCGAAAGCTTATCTCTCCATGATCAAATTAATCTTAAGATACTTCA ACTAAAAGATTTTAAAGATCCTGACGAATATTTGAATAGTCATACTCCTGAAGATTATTTTAATTTAATTGATAATTCAT CCTTTTGGATTGATTGGGAGATTGATCAGATCTTTAAAGATAAAGATTTAACTAAGTCTGAAATTTTCCAGAGTGTTATT TCGTCATTGGTAAAATTGTTGAGTAAATTACCTCATTCATCAACCAGAACTCATTATCTACAAAAAGTTTCCGAACAATT AAGTAAGGGACAAGCTAGGTTAGCAATACAGTTTGAACAAGATTTAAGAAATCAAGTAAAGGGATTTCGTTGGCATGGTA GATCAAAAAAATTTGAACAACCAAATGAAATTTCCCGACGGGAGAAAAATGAATCGGAAATAATCTTTTATTATTTACAT TGTCCAGATCTTAGGCTATTTATTCGTGATGAATTTCTTAAAAGAGAAATTAATGGTTTTAATACTAGTTATATTCAAAG TTTATGGGAAGCTATTTCAAAAATTGAACAAAATAATCTAGGTTTAAACTACTTAAATGATTTAAAACAATCAAATAGTC AAATTCTTCAAAAAGAGTTTTCTGCTATTAACTTAATTTCACTTTTGCCTGACTACTTAGCTCTTGATAATCTTGAATCA TCAAATAAAATTAATATTTTTGTTAATCCAAATGAGTTGTTTTTAACATTGCTTAGTAATCCTAAGGACAATTTACTGGG AACTTTATCACTTCTTGAAAAATATAATTCTTTAAAAAGATGTAGACACTTGATCGAATCTTGGGGATCTCAAAGATTAA AAACTTTAGAAAATTGTATATCTATTTTAATTGATAATCCTTCCTCTGGTTCCTCAAATACAAATAAAGAGATAGATGAT CTTTTTAAGGAATTAAACTCTGATGCCATTAAATTTCAGGAATTATATTACTTAGAAAGACAACATATAAATTTTTTAGA CAAACAACGCTGTGGTAATTTCATTGCTAGTTAA
Upstream 100 bases:
>100_bases TATCATTTTTAAAATAGTTTTATTGTGAAATTAAGTAGATTCTTATTTGATTTTGAACTATAACAATTAAATCATTATTT ATTTTTTGATAATAATCTCA
Downstream 100 bases:
>100_bases TCTCTTTTCTTTAAATTTATAGGCAGTATTTTTTAATCATATTTTTTACCTTTTTGGGTTTATCTTCAAGAATATAAGCT TCTACTTCTTTTGCATAAGT
Product: DNA primase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 677; Mature: 677
Protein sequence:
>677_residues MVHSIHPRTIQEVKEKADIVDVISEHIVLKKKGKEFVGICPFHDDNKPSMTVSPSKQFYYCFSCGAGGNSIKFLMEFTRA NFSDVVLSLAKKNNINVENLEGPQVEAYKKQLSRKEELYKILRVTKNWFKSQLNNSLGVEAMKYLTSKRNLSKKIIDNFE LGFAPNSWNDLFNYLSKVEKFPINLILASGLAISKDNSDKIYDRFRNRLIVPIHDMQGRVVAFGGRSLDGQEPKYLNSPE SEIFEKGKMLFAFEKASSNIRKRDKAILVEGYFDVISLHSKGITNSVASLGTALNKYQISQLCRCTDNKNIILNFDSDNA GILATKRVIKEVESLSLHDQINLKILQLKDFKDPDEYLNSHTPEDYFNLIDNSSFWIDWEIDQIFKDKDLTKSEIFQSVI SSLVKLLSKLPHSSTRTHYLQKVSEQLSKGQARLAIQFEQDLRNQVKGFRWHGRSKKFEQPNEISRREKNESEIIFYYLH CPDLRLFIRDEFLKREINGFNTSYIQSLWEAISKIEQNNLGLNYLNDLKQSNSQILQKEFSAINLISLLPDYLALDNLES SNKINIFVNPNELFLTLLSNPKDNLLGTLSLLEKYNSLKRCRHLIESWGSQRLKTLENCISILIDNPSSGSSNTNKEIDD LFKELNSDAIKFQELYYLERQHINFLDKQRCGNFIAS
Sequences:
>Translated_677_residues MVHSIHPRTIQEVKEKADIVDVISEHIVLKKKGKEFVGICPFHDDNKPSMTVSPSKQFYYCFSCGAGGNSIKFLMEFTRA NFSDVVLSLAKKNNINVENLEGPQVEAYKKQLSRKEELYKILRVTKNWFKSQLNNSLGVEAMKYLTSKRNLSKKIIDNFE LGFAPNSWNDLFNYLSKVEKFPINLILASGLAISKDNSDKIYDRFRNRLIVPIHDMQGRVVAFGGRSLDGQEPKYLNSPE SEIFEKGKMLFAFEKASSNIRKRDKAILVEGYFDVISLHSKGITNSVASLGTALNKYQISQLCRCTDNKNIILNFDSDNA GILATKRVIKEVESLSLHDQINLKILQLKDFKDPDEYLNSHTPEDYFNLIDNSSFWIDWEIDQIFKDKDLTKSEIFQSVI SSLVKLLSKLPHSSTRTHYLQKVSEQLSKGQARLAIQFEQDLRNQVKGFRWHGRSKKFEQPNEISRREKNESEIIFYYLH CPDLRLFIRDEFLKREINGFNTSYIQSLWEAISKIEQNNLGLNYLNDLKQSNSQILQKEFSAINLISLLPDYLALDNLES SNKINIFVNPNELFLTLLSNPKDNLLGTLSLLEKYNSLKRCRHLIESWGSQRLKTLENCISILIDNPSSGSSNTNKEIDD LFKELNSDAIKFQELYYLERQHINFLDKQRCGNFIAS >Mature_677_residues MVHSIHPRTIQEVKEKADIVDVISEHIVLKKKGKEFVGICPFHDDNKPSMTVSPSKQFYYCFSCGAGGNSIKFLMEFTRA NFSDVVLSLAKKNNINVENLEGPQVEAYKKQLSRKEELYKILRVTKNWFKSQLNNSLGVEAMKYLTSKRNLSKKIIDNFE LGFAPNSWNDLFNYLSKVEKFPINLILASGLAISKDNSDKIYDRFRNRLIVPIHDMQGRVVAFGGRSLDGQEPKYLNSPE SEIFEKGKMLFAFEKASSNIRKRDKAILVEGYFDVISLHSKGITNSVASLGTALNKYQISQLCRCTDNKNIILNFDSDNA GILATKRVIKEVESLSLHDQINLKILQLKDFKDPDEYLNSHTPEDYFNLIDNSSFWIDWEIDQIFKDKDLTKSEIFQSVI SSLVKLLSKLPHSSTRTHYLQKVSEQLSKGQARLAIQFEQDLRNQVKGFRWHGRSKKFEQPNEISRREKNESEIIFYYLH CPDLRLFIRDEFLKREINGFNTSYIQSLWEAISKIEQNNLGLNYLNDLKQSNSQILQKEFSAINLISLLPDYLALDNLES SNKINIFVNPNELFLTLLSNPKDNLLGTLSLLEKYNSLKRCRHLIESWGSQRLKTLENCISILIDNPSSGSSNTNKEIDD LFKELNSDAIKFQELYYLERQHINFLDKQRCGNFIAS
Specific function: DNA primase is the polymerase that synthesizes small RNA primers for the Okazaki fragments on both template strands at replication forks during chromosomal DNA synthesis [H]
COG id: COG0358
COG function: function code L; DNA primase (bacterial type)
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 Toprim domain [H]
Homologues:
Organism=Escherichia coli, GI1789447, Length=428, Percent_Identity=34.3457943925234, Blast_Score=256, Evalue=4e-69,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR013264 - InterPro: IPR019475 - InterPro: IPR006295 - InterPro: IPR006171 - InterPro: IPR002694 [H]
Pfam domain/function: PF10410 DnaB_bind; PF01751 Toprim; PF08275 Toprim_N; PF01807 zf-CHC2 [H]
EC number: 2.7.7.-
Molecular weight: Translated: 78127; Mature: 78127
Theoretical pI: Translated: 8.67; Mature: 8.67
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 0.9 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVHSIHPRTIQEVKEKADIVDVISEHIVLKKKGKEFVGICPFHDDNKPSMTVSPSKQFYY CCCCCCCHHHHHHHHHHHHHHHHHHHHEEEECCCCEEEECCCCCCCCCCEEECCCCCEEE CFSCGAGGNSIKFLMEFTRANFSDVVLSLAKKNNINVENLEGPQVEAYKKQLSRKEELYK EEEECCCCCHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHH ILRVTKNWFKSQLNNSLGVEAMKYLTSKRNLSKKIIDNFELGFAPNSWNDLFNYLSKVEK HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHH FPINLILASGLAISKDNSDKIYDRFRNRLIVPIHDMQGRVVAFGGRSLDGQEPKYLNSPE CCCEEEEECCEEECCCCCHHHHHHHHCCEEEEEECCCCCEEEECCCCCCCCCCCCCCCCH SEIFEKGKMLFAFEKASSNIRKRDKAILVEGYFDVISLHSKGITNSVASLGTALNKYQIS HHHHHCCCEEEEEEHHHHHHHHHCCEEEEECHHHHHHHHCCCCHHHHHHHHHHHHHHHHH QLCRCTDNKNIILNFDSDNAGILATKRVIKEVESLSLHDQINLKILQLKDFKDPDEYLNS HHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCHHHHHCC HTPEDYFNLIDNSSFWIDWEIDQIFKDKDLTKSEIFQSVISSLVKLLSKLPHSSTRTHYL CCCHHHHHHHCCCCEEEEEEHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHH QKVSEQLSKGQARLAIQFEQDLRNQVKGFRWHGRSKKFEQPNEISRREKNESEIIFYYLH HHHHHHHHCCCEEEEEEEHHHHHHHHCCCEECCCCCCCCCCHHHHHHCCCCCCEEEEEEE CPDLRLFIRDEFLKREINGFNTSYIQSLWEAISKIEQNNLGLNYLNDLKQSNSQILQKEF CCCEEHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH SAINLISLLPDYLALDNLESSNKINIFVNPNELFLTLLSNPKDNLLGTLSLLEKYNSLKR HHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCEEEEECCCCCHHHHHHHHHHHHHHHHHH CRHLIESWGSQRLKTLENCISILIDNPSSGSSNTNKEIDDLFKELNSDAIKFQELYYLER HHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHH QHINFLDKQRCGNFIAS HHCCHHHHHHHCHHCCC >Mature Secondary Structure MVHSIHPRTIQEVKEKADIVDVISEHIVLKKKGKEFVGICPFHDDNKPSMTVSPSKQFYY CCCCCCCHHHHHHHHHHHHHHHHHHHHEEEECCCCEEEECCCCCCCCCCEEECCCCCEEE CFSCGAGGNSIKFLMEFTRANFSDVVLSLAKKNNINVENLEGPQVEAYKKQLSRKEELYK EEEECCCCCHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHH ILRVTKNWFKSQLNNSLGVEAMKYLTSKRNLSKKIIDNFELGFAPNSWNDLFNYLSKVEK HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHH FPINLILASGLAISKDNSDKIYDRFRNRLIVPIHDMQGRVVAFGGRSLDGQEPKYLNSPE CCCEEEEECCEEECCCCCHHHHHHHHCCEEEEEECCCCCEEEECCCCCCCCCCCCCCCCH SEIFEKGKMLFAFEKASSNIRKRDKAILVEGYFDVISLHSKGITNSVASLGTALNKYQIS HHHHHCCCEEEEEEHHHHHHHHHCCEEEEECHHHHHHHHCCCCHHHHHHHHHHHHHHHHH QLCRCTDNKNIILNFDSDNAGILATKRVIKEVESLSLHDQINLKILQLKDFKDPDEYLNS HHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCHHHHHCC HTPEDYFNLIDNSSFWIDWEIDQIFKDKDLTKSEIFQSVISSLVKLLSKLPHSSTRTHYL CCCHHHHHHHCCCCEEEEEEHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHH QKVSEQLSKGQARLAIQFEQDLRNQVKGFRWHGRSKKFEQPNEISRREKNESEIIFYYLH HHHHHHHHCCCEEEEEEEHHHHHHHHCCCEECCCCCCCCCCHHHHHHCCCCCCEEEEEEE CPDLRLFIRDEFLKREINGFNTSYIQSLWEAISKIEQNNLGLNYLNDLKQSNSQILQKEF CCCEEHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH SAINLISLLPDYLALDNLESSNKINIFVNPNELFLTLLSNPKDNLLGTLSLLEKYNSLKR HHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCEEEEECCCCCHHHHHHHHHHHHHHHHHH CRHLIESWGSQRLKTLENCISILIDNPSSGSSNTNKEIDDLFKELNSDAIKFQELYYLER HHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHH QHINFLDKQRCGNFIAS HHCCHHHHHHHCHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: Transferring phosphorus-containing groups; Nucleotidyltransferases [C]
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA