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The map label for this gene is cbbM

Identifier: 78484769

GI number: 78484769

Start: 475276

End: 476655

Strand: Reverse

Name: cbbM

Synonym: Tcr_0424

Alternate gene names: 78484769

Gene position: 476655-475276 (Counterclockwise)

Preceding gene: 78484770

Following gene: 78484768

Centisome position: 19.63

GC content: 45.36

Gene sequence:

>1380_bases
ATGGATCAGTCGAATCGTTATGCTGATTTAAGCCTAAAAGAAGAAGACCTGATTGCTGGTCAGAATCACATTCTTGTTGC
TTACACAATGGAACCTGCTGCTGGTTACGGTTACTTAGAAGTTGCTGCACACATCGCAGCGGAATCTTCAACTGGAACAA
ACGTTGAAGTTTGTACAACAGACGATTTCACGAAAGGCGTTGATGCGATTGTTTATGACATCGACGAAGCAAACGGAATC
ATGAAAGTTGCCTACCCTTTCGATCTTTTCGATCGTAACGGGCTTGACGGTAAAACAATGATCGTTTCTTTCTTGACTCT
TGCCATTGGTAACAACCAAGGTATGGGTGACGTTAAAAACCTTCAAATGTTTGATTTCTGGGTACCAGAAACAAAACTTC
ACCTATTCGACGGTCCAGCTGTTGATATCACTAACATGTGGAAAATGCTTGGTCGTGATAAAGACAACGGTGGTTACATC
GCCGGTACAATCATTAAGCCTAAGCTAGGTCTACGCCCTGAGCCATTTGCTGATGCGGCTTACCAGTTCTGGCTAGGTGG
TGATTTCATCAAAAACGATGAGCCACAAGGTAACCAAACGTTCTGCCCAATGAAAAAAGTAATTCCTCTAGTTGCTGACG
CAATGAAGCGTGCACAAGATGAAACGGGTGAAACAAAGTTATTCTCGGCTAACATCACAGCAGATGACCATCATGAAATG
TGCTACCGTGCAGATTACATCCTAGAAACTTTCGGTGCAGACGCGCCTCAGGTTGCTTTCCTAGTAGATGGTTATGTAGG
TGGTCCTGGTATGATTACGACTGCACGTCGTAACTATCCTTCACAGTACTTACATTATCACCGTGCAGGTCATGGTGCGA
TCACTTCGCCTTCAGCGAAACGTGGTTACACGGCCTTCGTTCTTGCTAAGATCTCTCGTCTACAAGGTGCGTCTGGTATC
CACGTGGGCACAATGGGTTACGGTAAGATGGAAGGTGATGCTTCTGATAAGAACATCGCATACATGATCGAGCGTGATGA
GTGTCAAGGACCAGCTTTCTACCAAAAATGGAATGGTATGAAGCCAACAACACCGATCATCTCTGGTGGTATGAATGCAC
TACGTCTACCTGGTTTCTTCGAAAACCTAGGTCACGGAAACGTTATCAACACTTCTGGTGGTGGTTCTTACGGTCACATC
GATTCTCCAGCGGCAGGTGCCACATCACTTCGCCAATCTTACGAGTGCTGGAAGTCTGGTGCAGATCCAATCGAATTCGC
AAAAGATCACAAAGAGTTCGCTCGCGCATTCGAATCTTTCCCTGCCGATGCAGACAAAATCTATCCAGGTTGGAGAGAAA
AATTGGGCGTACACAAATAA

Upstream 100 bases:

>100_bases
ACCATTCAAATTTCGGGGTTAAGTTGTTTTTACAATGACTTAACAAAAATTATGGACGCACTTTCCTGAGCTGTTGTCCC
AATATATAGAGGTATAAAAC

Downstream 100 bases:

>100_bases
GCCATTCTTTAATGAATGTTTATTTAAACACCCAAAAACCTCTGCGTTCGCGCAGGGGTTTTTTTAGCATCCACACCAAA
AACCTAGCCAAGCACAAGGT

Product: ribulose bisphosphate carboxylase

Products: NA

Alternate protein names: RuBisCO

Number of amino acids: Translated: 459; Mature: 459

Protein sequence:

>459_residues
MDQSNRYADLSLKEEDLIAGQNHILVAYTMEPAAGYGYLEVAAHIAAESSTGTNVEVCTTDDFTKGVDAIVYDIDEANGI
MKVAYPFDLFDRNGLDGKTMIVSFLTLAIGNNQGMGDVKNLQMFDFWVPETKLHLFDGPAVDITNMWKMLGRDKDNGGYI
AGTIIKPKLGLRPEPFADAAYQFWLGGDFIKNDEPQGNQTFCPMKKVIPLVADAMKRAQDETGETKLFSANITADDHHEM
CYRADYILETFGADAPQVAFLVDGYVGGPGMITTARRNYPSQYLHYHRAGHGAITSPSAKRGYTAFVLAKISRLQGASGI
HVGTMGYGKMEGDASDKNIAYMIERDECQGPAFYQKWNGMKPTTPIISGGMNALRLPGFFENLGHGNVINTSGGGSYGHI
DSPAAGATSLRQSYECWKSGADPIEFAKDHKEFARAFESFPADADKIYPGWREKLGVHK

Sequences:

>Translated_459_residues
MDQSNRYADLSLKEEDLIAGQNHILVAYTMEPAAGYGYLEVAAHIAAESSTGTNVEVCTTDDFTKGVDAIVYDIDEANGI
MKVAYPFDLFDRNGLDGKTMIVSFLTLAIGNNQGMGDVKNLQMFDFWVPETKLHLFDGPAVDITNMWKMLGRDKDNGGYI
AGTIIKPKLGLRPEPFADAAYQFWLGGDFIKNDEPQGNQTFCPMKKVIPLVADAMKRAQDETGETKLFSANITADDHHEM
CYRADYILETFGADAPQVAFLVDGYVGGPGMITTARRNYPSQYLHYHRAGHGAITSPSAKRGYTAFVLAKISRLQGASGI
HVGTMGYGKMEGDASDKNIAYMIERDECQGPAFYQKWNGMKPTTPIISGGMNALRLPGFFENLGHGNVINTSGGGSYGHI
DSPAAGATSLRQSYECWKSGADPIEFAKDHKEFARAFESFPADADKIYPGWREKLGVHK
>Mature_459_residues
MDQSNRYADLSLKEEDLIAGQNHILVAYTMEPAAGYGYLEVAAHIAAESSTGTNVEVCTTDDFTKGVDAIVYDIDEANGI
MKVAYPFDLFDRNGLDGKTMIVSFLTLAIGNNQGMGDVKNLQMFDFWVPETKLHLFDGPAVDITNMWKMLGRDKDNGGYI
AGTIIKPKLGLRPEPFADAAYQFWLGGDFIKNDEPQGNQTFCPMKKVIPLVADAMKRAQDETGETKLFSANITADDHHEM
CYRADYILETFGADAPQVAFLVDGYVGGPGMITTARRNYPSQYLHYHRAGHGAITSPSAKRGYTAFVLAKISRLQGASGI
HVGTMGYGKMEGDASDKNIAYMIERDECQGPAFYQKWNGMKPTTPIISGGMNALRLPGFFENLGHGNVINTSGGGSYGHI
DSPAAGATSLRQSYECWKSGADPIEFAKDHKEFARAFESFPADADKIYPGWREKLGVHK

Specific function: RuBisCO catalyzes two reactions:the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate. Both reactions occur simultaneously and in competition at the

COG id: COG1850

COG function: function code G; Ribulose 1,5-bisphosphate carboxylase, large subunit

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RuBisCO large chain family. Type II subfamily

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RBL2_THICR (Q31IK3)

Other databases:

- EMBL:   CP000109
- RefSeq:   YP_390694.1
- ProteinModelPortal:   Q31IK3
- SMR:   Q31IK3
- STRING:   Q31IK3
- GeneID:   3761243
- GenomeReviews:   CP000109_GR
- KEGG:   tcx:Tcr_0424
- NMPDR:   fig|317025.3.peg.600
- eggNOG:   COG1850
- HOGENOM:   HBG405441
- OMA:   NVEVCTT
- ProtClustDB:   PRK13475
- BioCyc:   TCRU317025:TCR_0424-MONOMER
- GO:   GO:0009536
- HAMAP:   MF_01339
- InterPro:   IPR020871
- InterPro:   IPR020878
- InterPro:   IPR000685
- InterPro:   IPR017443
- InterPro:   IPR017444
- Gene3D:   G3DSA:3.20.20.110
- Gene3D:   G3DSA:3.30.70.150

Pfam domain/function: PF00016 RuBisCO_large; PF02788 RuBisCO_large_N; SSF51649 RuBisCO_large; SSF54966 RuBisCO_large

EC number: =4.1.1.39

Molecular weight: Translated: 50281; Mature: 50281

Theoretical pI: Translated: 5.29; Mature: 5.29

Prosite motif: PS00157 RUBISCO_LARGE

Important sites: ACT_SITE 166-166 ACT_SITE 287-287 BINDING 111-111 BINDING 168-168 BINDING 288-288 BINDING 321-321 BINDING 368-368

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDQSNRYADLSLKEEDLIAGQNHILVAYTMEPAAGYGYLEVAAHIAAESSTGTNVEVCTT
CCCCCCEEECCCCHHHHHCCCCCEEEEEEECCCCCCCHHHHHHHHHHCCCCCCEEEEEEC
DDFTKGVDAIVYDIDEANGIMKVAYPFDLFDRNGLDGKTMIVSFLTLAIGNNQGMGDVKN
CCHHCCCEEEEEEECCCCCEEEEEECEECCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCC
LQMFDFWVPETKLHLFDGPAVDITNMWKMLGRDKDNGGYIAGTIIKPKLGLRPEPFADAA
CEEEEEECCCCEEEEECCCCCCHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCCCHHHH
YQFWLGGDFIKNDEPQGNQTFCPMKKVIPLVADAMKRAQDETGETKLFSANITADDHHEM
EEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCHHHH
CYRADYILETFGADAPQVAFLVDGYVGGPGMITTARRNYPSQYLHYHRAGHGAITSPSAK
HHHHHHHHHHHCCCCCEEEEEEECEECCCCEEEEHHCCCCHHHHHHHHCCCCCCCCCCCC
RGYTAFVLAKISRLQGASGIHVGTMGYGKMEGDASDKNIAYMIERDECQGPAFYQKWNGM
CCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCEEEEEECCCCCCCHHHHHCCCC
KPTTPIISGGMNALRLPGFFENLGHGNVINTSGGGSYGHIDSPAAGATSLRQSYECWKSG
CCCCCHHHCCCCCEECCHHHHHCCCCCEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHCC
ADPIEFAKDHKEFARAFESFPADADKIYPGWREKLGVHK
CCHHHHHHHHHHHHHHHHHCCCCCHHCCCCHHHHCCCCC
>Mature Secondary Structure
MDQSNRYADLSLKEEDLIAGQNHILVAYTMEPAAGYGYLEVAAHIAAESSTGTNVEVCTT
CCCCCCEEECCCCHHHHHCCCCCEEEEEEECCCCCCCHHHHHHHHHHCCCCCCEEEEEEC
DDFTKGVDAIVYDIDEANGIMKVAYPFDLFDRNGLDGKTMIVSFLTLAIGNNQGMGDVKN
CCHHCCCEEEEEEECCCCCEEEEEECEECCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCC
LQMFDFWVPETKLHLFDGPAVDITNMWKMLGRDKDNGGYIAGTIIKPKLGLRPEPFADAA
CEEEEEECCCCEEEEECCCCCCHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCCCHHHH
YQFWLGGDFIKNDEPQGNQTFCPMKKVIPLVADAMKRAQDETGETKLFSANITADDHHEM
EEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCHHHH
CYRADYILETFGADAPQVAFLVDGYVGGPGMITTARRNYPSQYLHYHRAGHGAITSPSAK
HHHHHHHHHHHCCCCCEEEEEEECEECCCCEEEEHHCCCCHHHHHHHHCCCCCCCCCCCC
RGYTAFVLAKISRLQGASGIHVGTMGYGKMEGDASDKNIAYMIERDECQGPAFYQKWNGM
CCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCEEEEEECCCCCCCHHHHHCCCC
KPTTPIISGGMNALRLPGFFENLGHGNVINTSGGGSYGHIDSPAAGATSLRQSYECWKSG
CCCCCHHHCCCCCEECCHHHHHCCCCCEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHCC
ADPIEFAKDHKEFARAFESFPADADKIYPGWREKLGVHK
CCHHHHHHHHHHHHHHHHHCCCCCHHCCCCHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA