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The map label for this gene is 78484722

Identifier: 78484722

GI number: 78484722

Start: 425938

End: 427848

Strand: Reverse

Name: 78484722

Synonym: Tcr_0377

Alternate gene names: NA

Gene position: 427848-425938 (Counterclockwise)

Preceding gene: 78484723

Following gene: 78484721

Centisome position: 17.62

GC content: 37.73

Gene sequence:

>1911_bases
GTGAAGAATGACTTATTCTCTGTCGGGTCAGTTTTCAACCTTGAAAACAATCAATTTATTGTCTCACAAACAAAAAAAGA
TGGGTTCAAAGCATCCAATCTTCGAAATAGCAGTACCTTAACGTTTACCTATGAGAAAGCACAAGAGTTAATTGATACGC
ACGCTCTAATCTTCCAAAAAGATTCTCTTAGTCAGACAGAAGTCAGTTTCGAAGATCTGCCTCAAGAAGAGCAAAAACTT
GCCTTAAAAAAACTAAAGCTCATAGAACTTCTAGCAGAGAGAAGAATTACTAAAGTATCCGGGACAGAAAAAACTAAAAA
AGCCATACTTGATTTATCATCTGACGCAGGATTTACAAAAGCACCTCACTGGCAATCAGTTCGAAAATGGTGCATTGAAT
TTACAGATGCTGCAGGAAAAATTAAAGGGCTTTACACTAATAAAAATTTGCGAGGAAATCGTAAATACCGTCTATCTGCA
ATTGTCGAAGAAATTATTGATACTGAAATCGATAGCTTTATTAGACCAAGCCAACCAAGAATTTCAACACTATGCAGAAA
TATTGAAACAGAAATAATTAAATATAATCTAGACAATCCAACAAATGTGCAGAGAATCCCAACTCGCAATACCATTATAA
AAAGGTTAAATAAAACTAATTTAGAGCGGCGGCAAAGAGCATCAAAAGGCAGTTCAACGTATGAGTTAGGTTTAGCGGAT
TCAATAGCTCCATTCTCTACAACTCATATTTTAGAACGAGTTGAAATTGACCATACACCTCTCGACATACACCTTATTCA
TGACGTTGATTCTACGCTTATTGGAAGACCTACATTAACAGCTCTCTCCGACTACCATTCAGGCATTGTGCTAGGGTTTC
AACTTTCCTTTGAGGCTGCATCATTCGCAGCCGTTTCTTCAGCTTGTTTAAATGCATTTCTACCAAAACAAGAAGAAATT
GAAAGGCTTAACATTCAAGGAAGCTGGGAATCTCACGGGATCCCCGAAACCTTAGTCACAGACAATGGAAATGAGTTTTG
GAGTGATAATTTTTCGGAGGTTGGGATGCAGCTCGGCATGGTAATTCAATATGCCCCTATAAGGCACCCGAATTACAAAG
GGGCGATTGAAAGACTCTTTGGTTCAATTAACACATTATTTCTTGATGATCTGCCTGGGGTTGTGAGAAAGCCGCATAAA
AAAAATGATCGTTACGATCCGCGACAAGAAGCACTAATCCCCTTCACAAAATTTAAATGCGATTTTTACGATTGGGTAGT
AAATGTTTATAACAATCTTCCAAATGAAGATGGGGTTACACCAAAAGAAATCTGGAATTCTTCAGCCAAGCAACAACCAA
TACCTATTGAAGATAATCTTGAAGTTCAGCTTGCTCTTCTCGCATCCCACGGCGCCACGCTAATGGGCAATGGGATTTCT
TTCCTTGGCCTAAAGTACAATTCTGATGCACAAAAGAGTCTTTTTAGACGAGACGGGAAGCACAAAGTTAGCTTTAAAGT
AAACCCTTACGACCTCGGAGAGATACTTGTTTTCGACTCCCGTGAACTAGTCTACATTACAGTACCATGCCTTGAATATA
ACTATGCTAAGGGCACCTCAATTTATGAACATAGAGAATACAAGCGGATAGCAAGAAAATATAAAAACCAAAAACTCAAT
AATCAAGATCTCATGCTGGCTAAGATTCGACAAAAAAATGAAAGAGATAAAATCAGAGGACAAAATGCCAGAAGAAAAAC
TCAGGTCACAACTCAAAAACATACTCGAATTGAAAAAATTGGAGCACCGACTTTTGACCTAATACCTTCTAACTCCTCTA
AGTCAAATGAAGTACCCGTTGAGCAAACAACTGTAATAAAGGTTAAAACTGAAGATTGGGATATTGAATAA

Upstream 100 bases:

>100_bases
TCCTATGATTTAAAGTCGCTATATCAGCTCATTGCATTTGGATATATAAAGTTTGACATCAATAACGAACCTTTTTCGGT
GAATTCGGAGGTATGGTTCA

Downstream 100 bases:

>100_bases
TGAATCAATTCGCAGAAAAAGAACCATACATACTTAGCCCAGACCTTAAATATCTGAGAGAAAAGTTTGATGAATTAAGA
AGGCATAAAAAAGATTTCAA

Product: integrase catalytic subunit

Products: NA

Alternate protein names: ORF 480 [H]

Number of amino acids: Translated: 636; Mature: 636

Protein sequence:

>636_residues
MKNDLFSVGSVFNLENNQFIVSQTKKDGFKASNLRNSSTLTFTYEKAQELIDTHALIFQKDSLSQTEVSFEDLPQEEQKL
ALKKLKLIELLAERRITKVSGTEKTKKAILDLSSDAGFTKAPHWQSVRKWCIEFTDAAGKIKGLYTNKNLRGNRKYRLSA
IVEEIIDTEIDSFIRPSQPRISTLCRNIETEIIKYNLDNPTNVQRIPTRNTIIKRLNKTNLERRQRASKGSSTYELGLAD
SIAPFSTTHILERVEIDHTPLDIHLIHDVDSTLIGRPTLTALSDYHSGIVLGFQLSFEAASFAAVSSACLNAFLPKQEEI
ERLNIQGSWESHGIPETLVTDNGNEFWSDNFSEVGMQLGMVIQYAPIRHPNYKGAIERLFGSINTLFLDDLPGVVRKPHK
KNDRYDPRQEALIPFTKFKCDFYDWVVNVYNNLPNEDGVTPKEIWNSSAKQQPIPIEDNLEVQLALLASHGATLMGNGIS
FLGLKYNSDAQKSLFRRDGKHKVSFKVNPYDLGEILVFDSRELVYITVPCLEYNYAKGTSIYEHREYKRIARKYKNQKLN
NQDLMLAKIRQKNERDKIRGQNARRKTQVTTQKHTRIEKIGAPTFDLIPSNSSKSNEVPVEQTTVIKVKTEDWDIE

Sequences:

>Translated_636_residues
MKNDLFSVGSVFNLENNQFIVSQTKKDGFKASNLRNSSTLTFTYEKAQELIDTHALIFQKDSLSQTEVSFEDLPQEEQKL
ALKKLKLIELLAERRITKVSGTEKTKKAILDLSSDAGFTKAPHWQSVRKWCIEFTDAAGKIKGLYTNKNLRGNRKYRLSA
IVEEIIDTEIDSFIRPSQPRISTLCRNIETEIIKYNLDNPTNVQRIPTRNTIIKRLNKTNLERRQRASKGSSTYELGLAD
SIAPFSTTHILERVEIDHTPLDIHLIHDVDSTLIGRPTLTALSDYHSGIVLGFQLSFEAASFAAVSSACLNAFLPKQEEI
ERLNIQGSWESHGIPETLVTDNGNEFWSDNFSEVGMQLGMVIQYAPIRHPNYKGAIERLFGSINTLFLDDLPGVVRKPHK
KNDRYDPRQEALIPFTKFKCDFYDWVVNVYNNLPNEDGVTPKEIWNSSAKQQPIPIEDNLEVQLALLASHGATLMGNGIS
FLGLKYNSDAQKSLFRRDGKHKVSFKVNPYDLGEILVFDSRELVYITVPCLEYNYAKGTSIYEHREYKRIARKYKNQKLN
NQDLMLAKIRQKNERDKIRGQNARRKTQVTTQKHTRIEKIGAPTFDLIPSNSSKSNEVPVEQTTVIKVKTEDWDIE
>Mature_636_residues
MKNDLFSVGSVFNLENNQFIVSQTKKDGFKASNLRNSSTLTFTYEKAQELIDTHALIFQKDSLSQTEVSFEDLPQEEQKL
ALKKLKLIELLAERRITKVSGTEKTKKAILDLSSDAGFTKAPHWQSVRKWCIEFTDAAGKIKGLYTNKNLRGNRKYRLSA
IVEEIIDTEIDSFIRPSQPRISTLCRNIETEIIKYNLDNPTNVQRIPTRNTIIKRLNKTNLERRQRASKGSSTYELGLAD
SIAPFSTTHILERVEIDHTPLDIHLIHDVDSTLIGRPTLTALSDYHSGIVLGFQLSFEAASFAAVSSACLNAFLPKQEEI
ERLNIQGSWESHGIPETLVTDNGNEFWSDNFSEVGMQLGMVIQYAPIRHPNYKGAIERLFGSINTLFLDDLPGVVRKPHK
KNDRYDPRQEALIPFTKFKCDFYDWVVNVYNNLPNEDGVTPKEIWNSSAKQQPIPIEDNLEVQLALLASHGATLMGNGIS
FLGLKYNSDAQKSLFRRDGKHKVSFKVNPYDLGEILVFDSRELVYITVPCLEYNYAKGTSIYEHREYKRIARKYKNQKLN
NQDLMLAKIRQKNERDKIRGQNARRKTQVTTQKHTRIEKIGAPTFDLIPSNSSKSNEVPVEQTTVIKVKTEDWDIE

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 integrase catalytic domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR001584
- InterPro:   IPR012337
- InterPro:   IPR015378
- InterPro:   IPR009004 [H]

Pfam domain/function: PF09299 Mu-transpos_C; PF00665 rve [H]

EC number: NA

Molecular weight: Translated: 72607; Mature: 72607

Theoretical pI: Translated: 9.04; Mature: 9.04

Prosite motif: PS50994 INTEGRASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKNDLFSVGSVFNLENNQFIVSQTKKDGFKASNLRNSSTLTFTYEKAQELIDTHALIFQK
CCCCCCCCCCEEECCCCEEEEEECCCCCCCCCCCCCCCEEEEEHHHHHHHHHHHHHEEEC
DSLSQTEVSFEDLPQEEQKLALKKLKLIELLAERRITKVSGTEKTKKAILDLSSDAGFTK
CCCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCC
APHWQSVRKWCIEFTDAAGKIKGLYTNKNLRGNRKYRLSAIVEEIIDTEIDSFIRPSQPR
CCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCH
ISTLCRNIETEIIKYNLDNPTNVQRIPTRNTIIKRLNKTNLERRQRASKGSSTYELGLAD
HHHHHHHCCEEEEEEECCCCCCCEECCCHHHHHHHHHHCCHHHHHHHCCCCCEEEECCCC
SIAPFSTTHILERVEIDHTPLDIHLIHDVDSTLIGRPTLTALSDYHSGIVLGFQLSFEAA
CCCCCHHHHHHHHHCCCCCCEEEEEEECCCHHHCCCCHHHHHHHCCCCEEEEEEEECCHH
SFAAVSSACLNAFLPKQEEIERLNIQGSWESHGIPETLVTDNGNEFWSDNFSEVGMQLGM
HHHHHHHHHHHHHCCCHHHHHEECCCCCCCCCCCCCEEEECCCCCCCCCCHHHHHHHHHH
VIQYAPIRHPNYKGAIERLFGSINTLFLDDLPGVVRKPHKKNDRYDPRQEALIPFTKFKC
EEEECCCCCCCHHHHHHHHHHHHHHEEHHCCCHHHCCCCCCCCCCCCHHHHCCCHHHHCC
DFYDWVVNVYNNLPNEDGVTPKEIWNSSAKQQPIPIEDNLEVQLALLASHGATLMGNGIS
HHHHHHHHHHHCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCEEEEEEECCCCEEECCCEE
FLGLKYNSDAQKSLFRRDGKHKVSFKVNPYDLGEILVFDSRELVYITVPCLEYNYAKGTS
EEEEEECCHHHHHHHHCCCCEEEEEEECCCCCCEEEEECCCCEEEEEECCEECCCCCCCC
IYEHREYKRIARKYKNQKLNNQDLMLAKIRQKNERDKIRGQNARRKTQVTTQKHTRIEKI
HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHCCCCCHHHHHHHHHHHHHHHHH
GAPTFDLIPSNSSKSNEVPVEQTTVIKVKTEDWDIE
CCCCEEECCCCCCCCCCCCCCCEEEEEEECCCCCCC
>Mature Secondary Structure
MKNDLFSVGSVFNLENNQFIVSQTKKDGFKASNLRNSSTLTFTYEKAQELIDTHALIFQK
CCCCCCCCCCEEECCCCEEEEEECCCCCCCCCCCCCCCEEEEEHHHHHHHHHHHHHEEEC
DSLSQTEVSFEDLPQEEQKLALKKLKLIELLAERRITKVSGTEKTKKAILDLSSDAGFTK
CCCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCC
APHWQSVRKWCIEFTDAAGKIKGLYTNKNLRGNRKYRLSAIVEEIIDTEIDSFIRPSQPR
CCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCH
ISTLCRNIETEIIKYNLDNPTNVQRIPTRNTIIKRLNKTNLERRQRASKGSSTYELGLAD
HHHHHHHCCEEEEEEECCCCCCCEECCCHHHHHHHHHHCCHHHHHHHCCCCCEEEECCCC
SIAPFSTTHILERVEIDHTPLDIHLIHDVDSTLIGRPTLTALSDYHSGIVLGFQLSFEAA
CCCCCHHHHHHHHHCCCCCCEEEEEEECCCHHHCCCCHHHHHHHCCCCEEEEEEEECCHH
SFAAVSSACLNAFLPKQEEIERLNIQGSWESHGIPETLVTDNGNEFWSDNFSEVGMQLGM
HHHHHHHHHHHHHCCCHHHHHEECCCCCCCCCCCCCEEEECCCCCCCCCCHHHHHHHHHH
VIQYAPIRHPNYKGAIERLFGSINTLFLDDLPGVVRKPHKKNDRYDPRQEALIPFTKFKC
EEEECCCCCCCHHHHHHHHHHHHHHEEHHCCCHHHCCCCCCCCCCCCHHHHCCCHHHHCC
DFYDWVVNVYNNLPNEDGVTPKEIWNSSAKQQPIPIEDNLEVQLALLASHGATLMGNGIS
HHHHHHHHHHHCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCEEEEEEECCCCEEECCCEE
FLGLKYNSDAQKSLFRRDGKHKVSFKVNPYDLGEILVFDSRELVYITVPCLEYNYAKGTS
EEEEEECCHHHHHHHHCCCCEEEEEEECCCCCCEEEEECCCCEEEEEECCEECCCCCCCC
IYEHREYKRIARKYKNQKLNNQDLMLAKIRQKNERDKIRGQNARRKTQVTTQKHTRIEKI
HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHCCCCCHHHHHHHHHHHHHHHHH
GAPTFDLIPSNSSKSNEVPVEQTTVIKVKTEDWDIE
CCCCEEECCCCCCCCCCCCCCCEEEEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 2170815 [H]