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The map label for this gene is cph2 [H]

Identifier: 78484545

GI number: 78484545

Start: 237060

End: 238118

Strand: Reverse

Name: cph2 [H]

Synonym: Tcr_0200

Alternate gene names: 78484545

Gene position: 238118-237060 (Counterclockwise)

Preceding gene: 78484549

Following gene: 78484542

Centisome position: 9.81

GC content: 42.12

Gene sequence:

>1059_bases
ATGTTGATAGATATTAAAGATGTCCCCGAAAAAGCCCAGCGCATTTTCGTTCAGCTCATTGATATTTTCGAAGAGCAAGA
CATTAATCCGACCCCGCTGAATTATTATATTTGGTACCAATACTACAAAGGGGATCACCCTAAATTTCGTCAAGAGATGG
ACAATGCGCTGCAAGACCCCTTTGGCTACAACGACCGCTTAGGGCGACGCTTGTACGATGAATACTTTTCGGATGAAAAA
TCAAACAATGACTTTGATCGTGCATTTAAACGTCTGATCAATCTTGTCATTAAAAAAATGAACGTGTGGAGCGATAAGCT
TGAAAAACACACCCAAGATTTAAATCAGTACACCACATCTCTCGCCTCAGAAGATATTGATGCCGCCAAGCTGAAAGAAT
TGACCCATTCAGTATTGAATACTGCTTCATCCATGAAACAGTCCAGCGAAGAATTTCAAAAAGAAATGCTGAGCAGTAAT
GAAGAAATCCTTCGACTACGAAAAGAATTGATTGAAGCACGAGCCGAAACCCTAACCGATGAATTGACCGAAGTTGGAAA
TCGCAAAGCATTCAACAATGCCATTCAAGACTTAGCGGACAGTACGCAAGACAACCCGCAAAGTTTGGTTTTGATTTTAA
CCGACATTGATCATTTCAAACGCTTTAACGATACGTTTGGCCATTTGGTTGGCGACAGTGTTCTCAGGTATTTCGCCAAC
TTGATGAAAAAAACCAGAGACGACACCGAAACCGTTTGCCGTTATGGGGGCGAAGAGTTTGCGATTCTGTTATCCCATAG
CAGCCTTGAAAAAGCGAAAGAGCGAGCCGAATCCATTCGACACAGCTTGGAAACGGCCAAACTTAAACGTAAAGATTCGG
AAAAAACATTAGGAAAAATCACCGCTTCATTTGGGGTAGCCGTTTACAAAGGTGAAGACCATGAAACGATTGACGACTGG
ATTAAACGTGCGGATGATGCACTTTATGAAGCGAAAAACCAAGGTCGAAACCGAATCATTACGGATGAAGAGTTGGAAGC
CACTTCGACGTCAAATTAG

Upstream 100 bases:

>100_bases
CCGACTCGCGATTCCGCCAAAAACAGGGAAATAATTTTAGTTATCAAAATAGCCCTTACATTGACGTACACCAACTTTAA
ATGAAACACAGGAAAGGATT

Downstream 100 bases:

>100_bases
CCAGACCTGGCTGATTTTCAAGGCATTCCCAGTAAGGCTTAAAAACTCAATCTGACTTCGCTTTAATTAGAAGCGTATCA
ACCCCTAACGCTCGAAGTTC

Product: diguanylate cyclase

Products: NA

Alternate protein names: Bacteriophytochrome cph2 [H]

Number of amino acids: Translated: 352; Mature: 352

Protein sequence:

>352_residues
MLIDIKDVPEKAQRIFVQLIDIFEEQDINPTPLNYYIWYQYYKGDHPKFRQEMDNALQDPFGYNDRLGRRLYDEYFSDEK
SNNDFDRAFKRLINLVIKKMNVWSDKLEKHTQDLNQYTTSLASEDIDAAKLKELTHSVLNTASSMKQSSEEFQKEMLSSN
EEILRLRKELIEARAETLTDELTEVGNRKAFNNAIQDLADSTQDNPQSLVLILTDIDHFKRFNDTFGHLVGDSVLRYFAN
LMKKTRDDTETVCRYGGEEFAILLSHSSLEKAKERAESIRHSLETAKLKRKDSEKTLGKITASFGVAVYKGEDHETIDDW
IKRADDALYEAKNQGRNRIITDEELEATSTSN

Sequences:

>Translated_352_residues
MLIDIKDVPEKAQRIFVQLIDIFEEQDINPTPLNYYIWYQYYKGDHPKFRQEMDNALQDPFGYNDRLGRRLYDEYFSDEK
SNNDFDRAFKRLINLVIKKMNVWSDKLEKHTQDLNQYTTSLASEDIDAAKLKELTHSVLNTASSMKQSSEEFQKEMLSSN
EEILRLRKELIEARAETLTDELTEVGNRKAFNNAIQDLADSTQDNPQSLVLILTDIDHFKRFNDTFGHLVGDSVLRYFAN
LMKKTRDDTETVCRYGGEEFAILLSHSSLEKAKERAESIRHSLETAKLKRKDSEKTLGKITASFGVAVYKGEDHETIDDW
IKRADDALYEAKNQGRNRIITDEELEATSTSN
>Mature_352_residues
MLIDIKDVPEKAQRIFVQLIDIFEEQDINPTPLNYYIWYQYYKGDHPKFRQEMDNALQDPFGYNDRLGRRLYDEYFSDEK
SNNDFDRAFKRLINLVIKKMNVWSDKLEKHTQDLNQYTTSLASEDIDAAKLKELTHSVLNTASSMKQSSEEFQKEMLSSN
EEILRLRKELIEARAETLTDELTEVGNRKAFNNAIQDLADSTQDNPQSLVLILTDIDHFKRFNDTFGHLVGDSVLRYFAN
LMKKTRDDTETVCRYGGEEFAILLSHSSLEKAKERAESIRHSLETAKLKRKDSEKTLGKITASFGVAVYKGEDHETIDDW
IKRADDALYEAKNQGRNRIITDEELEATSTSN

Specific function: Photoreceptor which exists in two forms that are reversibly interconvertible by light:the R form that absorbs maximally in the red region of the spectrum and the FR form that absorbs maximally in the far-red region [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Integral Membrane Protein [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 GGDEF domains [H]

Homologues:

Organism=Escherichia coli, GI1787262, Length=163, Percent_Identity=38.6503067484663, Blast_Score=107, Evalue=1e-24,
Organism=Escherichia coli, GI87081881, Length=162, Percent_Identity=38.8888888888889, Blast_Score=102, Evalue=3e-23,
Organism=Escherichia coli, GI1787816, Length=196, Percent_Identity=33.6734693877551, Blast_Score=98, Evalue=8e-22,
Organism=Escherichia coli, GI145693134, Length=191, Percent_Identity=32.9842931937173, Blast_Score=98, Evalue=1e-21,
Organism=Escherichia coli, GI87082007, Length=167, Percent_Identity=35.9281437125749, Blast_Score=93, Evalue=3e-20,
Organism=Escherichia coli, GI1788381, Length=191, Percent_Identity=28.7958115183246, Blast_Score=89, Evalue=3e-19,
Organism=Escherichia coli, GI1786584, Length=159, Percent_Identity=32.7044025157233, Blast_Score=88, Evalue=9e-19,
Organism=Escherichia coli, GI1787802, Length=162, Percent_Identity=35.1851851851852, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI1788085, Length=210, Percent_Identity=28.5714285714286, Blast_Score=76, Evalue=3e-15,
Organism=Escherichia coli, GI1787056, Length=173, Percent_Identity=30.0578034682081, Blast_Score=75, Evalue=8e-15,
Organism=Escherichia coli, GI1787541, Length=195, Percent_Identity=30.7692307692308, Blast_Score=72, Evalue=8e-14,
Organism=Escherichia coli, GI87081974, Length=163, Percent_Identity=26.9938650306748, Blast_Score=68, Evalue=9e-13,
Organism=Escherichia coli, GI1788956, Length=191, Percent_Identity=26.1780104712042, Blast_Score=65, Evalue=9e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR003018
- InterPro:   IPR016132
- InterPro:   IPR001294
- InterPro:   IPR013515 [H]

Pfam domain/function: PF00563 EAL; PF01590 GAF; PF00990 GGDEF; PF00360 Phytochrome [H]

EC number: NA

Molecular weight: Translated: 40881; Mature: 40881

Theoretical pI: Translated: 4.86; Mature: 4.86

Prosite motif: PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLIDIKDVPEKAQRIFVQLIDIFEEQDINPTPLNYYIWYQYYKGDHPKFRQEMDNALQDP
CCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEECCCCHHHHHHHHHHHCCC
FGYNDRLGRRLYDEYFSDEKSNNDFDRAFKRLINLVIKKMNVWSDKLEKHTQDLNQYTTS
CCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LASEDIDAAKLKELTHSVLNTASSMKQSSEEFQKEMLSSNEEILRLRKELIEARAETLTD
HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
ELTEVGNRKAFNNAIQDLADSTQDNPQSLVLILTDIDHFKRFNDTFGHLVGDSVLRYFAN
HHHHHCCHHHHHHHHHHHHHCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHH
LMKKTRDDTETVCRYGGEEFAILLSHSSLEKAKERAESIRHSLETAKLKRKDSEKTLGKI
HHHHCCCHHHHHHHCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TASFGVAVYKGEDHETIDDWIKRADDALYEAKNQGRNRIITDEELEATSTSN
HHHHCEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHCCCCCCC
>Mature Secondary Structure
MLIDIKDVPEKAQRIFVQLIDIFEEQDINPTPLNYYIWYQYYKGDHPKFRQEMDNALQDP
CCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEECCCCHHHHHHHHHHHCCC
FGYNDRLGRRLYDEYFSDEKSNNDFDRAFKRLINLVIKKMNVWSDKLEKHTQDLNQYTTS
CCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LASEDIDAAKLKELTHSVLNTASSMKQSSEEFQKEMLSSNEEILRLRKELIEARAETLTD
HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
ELTEVGNRKAFNNAIQDLADSTQDNPQSLVLILTDIDHFKRFNDTFGHLVGDSVLRYFAN
HHHHHCCHHHHHHHHHHHHHCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHH
LMKKTRDDTETVCRYGGEEFAILLSHSSLEKAKERAESIRHSLETAKLKRKDSEKTLGKI
HHHHCCCHHHHHHHCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TASFGVAVYKGEDHETIDDWIKRADDALYEAKNQGRNRIITDEELEATSTSN
HHHHCEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231; 10978170; 11063585 [H]