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The map label for this gene is phaC [H]

Identifier: 78484408

GI number: 78484408

Start: 73838

End: 74242

Strand: Reverse

Name: phaC [H]

Synonym: Tcr_0062

Alternate gene names: 78484408

Gene position: 74242-73838 (Counterclockwise)

Preceding gene: 78484409

Following gene: 78484407

Centisome position: 3.06

GC content: 44.94

Gene sequence:

>405_bases
ATGGAATTACTCATTGCCATCGTCATTGGCGTGTTAACCGCCAGTGGTGTGTTTCTCACATTAAGAGCACGAACTTTTCC
TGTGGTATTAGGGTTAACATTATTAGCGTATGCCGTTAACGTCTTTTTATTTGCTATGGGGCGATTAACCATCGGCTTAC
CCGCGGTGATTAATCCTGCTCAAGGCGGTTATACCGATCCATTGCCGCAAGCTTTAGTGCTAACGGCCATTGTCATTGCC
TTTGGGATGACTGCCTTTTTAATTGTGTTGGCATTAAAATCACGCTCAGAACTTGGAAATGATCATGTGGACGGCTTACA
TCTAGCCTCCGATGAAGTCGCTTATGATAAAAAATCGACTGCGCAGAAAACGCAGCAACCCAATAAAGAGGCCTCCCACG
AATGA

Upstream 100 bases:

>100_bases
CCACCGTCATGAGTCTGGTTCAACTAGGTCGTTTAAGTTATGCCTCTCATCATCCAGAACGAGCACTACTTCAAAATGCC
ACAACCTCGGAGGTTAAATA

Downstream 100 bases:

>100_bases
TGTCATACCCTTTTTTACCCGTTTTAATCCCTTTAATTGGCGGCGTCCTTGTTTTATTGGTACGCCAAGCCGGGCTAAAT
TTGCAACGTTTGTTAAGTTT

Product: NADH-ubiquinone oxidoreductase, chain 4L

Products: NA

Alternate protein names: pH adaptation potassium efflux system protein C; Pha system subunit C [H]

Number of amino acids: Translated: 134; Mature: 134

Protein sequence:

>134_residues
MELLIAIVIGVLTASGVFLTLRARTFPVVLGLTLLAYAVNVFLFAMGRLTIGLPAVINPAQGGYTDPLPQALVLTAIVIA
FGMTAFLIVLALKSRSELGNDHVDGLHLASDEVAYDKKSTAQKTQQPNKEASHE

Sequences:

>Translated_134_residues
MELLIAIVIGVLTASGVFLTLRARTFPVVLGLTLLAYAVNVFLFAMGRLTIGLPAVINPAQGGYTDPLPQALVLTAIVIA
FGMTAFLIVLALKSRSELGNDHVDGLHLASDEVAYDKKSTAQKTQQPNKEASHE
>Mature_134_residues
MELLIAIVIGVLTASGVFLTLRARTFPVVLGLTLLAYAVNVFLFAMGRLTIGLPAVINPAQGGYTDPLPQALVLTAIVIA
FGMTAFLIVLALKSRSELGNDHVDGLHLASDEVAYDKKSTAQKTQQPNKEASHE

Specific function: Part of a K(+) efflux system which is required for the adaptation of R.meliloti to alkaline pH as well as for the infection process during symbiotic nodule development [H]

COG id: COG1006

COG function: function code P; Multisubunit Na+/H+ antiporter, MnhC subunit

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CPA3 antiporters (TC 2.A.63) subunit C family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006673
- InterPro:   IPR001133 [H]

Pfam domain/function: PF00420 Oxidored_q2 [H]

EC number: NA

Molecular weight: Translated: 14245; Mature: 14245

Theoretical pI: Translated: 6.80; Mature: 6.80

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MELLIAIVIGVLTASGVFLTLRARTFPVVLGLTLLAYAVNVFLFAMGRLTIGLPAVINPA
CHHHHHHHHHHHHHCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCC
QGGYTDPLPQALVLTAIVIAFGMTAFLIVLALKSRSELGNDHVDGLHLASDEVAYDKKST
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEECCCCHHHHCCHHH
AQKTQQPNKEASHE
HHHHCCCCCCCCCC
>Mature Secondary Structure
MELLIAIVIGVLTASGVFLTLRARTFPVVLGLTLLAYAVNVFLFAMGRLTIGLPAVINPA
CHHHHHHHHHHHHHCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCC
QGGYTDPLPQALVLTAIVIAFGMTAFLIVLALKSRSELGNDHVDGLHLASDEVAYDKKST
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEECCCCHHHHCCHHH
AQKTQQPNKEASHE
HHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9680201; 11481430 [H]