Click here to switch to the map view.

The map label for this gene is infA

Identifier: 78358807

GI number: 78358807

Start: 3714816

End: 3715034

Strand: Direct

Name: infA

Synonym: Dde_3769

Alternate gene names: 78358807

Gene position: 3714816-3715034 (Clockwise)

Preceding gene: 78358806

Following gene: 78358815

Centisome position: 99.59

GC content: 49.32

Gene sequence:

>219_bases
ATGGCGAAGGAAGACGCCATCGAAGTTGACGGAATCGTTCAGGAAGCTCTGCCTAACGCAATGTTTCAGGTAGAGCTGGA
AAACGGCCACACAGTACTCGCTCATATTTCCGGTAAAATGCGTAAATTTTATATCCGCATACTGCCCGGAGACAAAGTGC
GCGTGGAACTATCGCCGTATGACCTGAACCGTGGTCGCATAACCTACCGCATGAAGTAA

Upstream 100 bases:

>100_bases
TTATTGACAGGCTTCTTTTTTTGTGGAATGGCGATTGCGTTGGTTTTGCGGTGTTTTTGCGCCGCATTGCTCATACCGCA
CGGAGCCATCAGGAGGAGTC

Downstream 100 bases:

>100_bases
CGGCACAAAACCGCACTTTTTTTGCGGCCGCTACTGCGGCCTGCTTCTCTGCGCCCGAAAGCATACCCCGCCGGTCAATA
TACTACATCCTAAAACCCGC

Product: translation initiation factor IF-1

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 72; Mature: 71

Protein sequence:

>72_residues
MAKEDAIEVDGIVQEALPNAMFQVELENGHTVLAHISGKMRKFYIRILPGDKVRVELSPYDLNRGRITYRMK

Sequences:

>Translated_72_residues
MAKEDAIEVDGIVQEALPNAMFQVELENGHTVLAHISGKMRKFYIRILPGDKVRVELSPYDLNRGRITYRMK
>Mature_71_residues
AKEDAIEVDGIVQEALPNAMFQVELENGHTVLAHISGKMRKFYIRILPGDKVRVELSPYDLNRGRITYRMK

Specific function: No specific function has so far been attributed to this initiation factor; however, it seems to stimulate more or less all the activities of the other two initiation factors, IF-2 and IF-3

COG id: COG0361

COG function: function code J; Translation initiation factor 1 (IF-1)

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S1-like domain

Homologues:

Organism=Escherichia coli, GI1787110, Length=72, Percent_Identity=72.2222222222222, Blast_Score=110, Evalue=1e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): IF12_DESDG (Q30UT5)

Other databases:

- EMBL:   CP000112
- RefSeq:   YP_390256.1
- ProteinModelPortal:   Q30UT5
- SMR:   Q30UT5
- STRING:   Q30UT5
- GeneID:   3758757
- GenomeReviews:   CP000112_GR
- KEGG:   dde:Dde_3769
- NMPDR:   fig|207559.3.peg.2471
- eggNOG:   COG0361
- HOGENOM:   HBG286099
- OMA:   KMRMHFI
- ProtClustDB:   PRK00276
- BioCyc:   DDES207559:DDE_3769-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_00075
- InterPro:   IPR012340
- InterPro:   IPR016027
- InterPro:   IPR022967
- InterPro:   IPR006196
- InterPro:   IPR004368
- Gene3D:   G3DSA:2.40.50.140
- SMART:   SM00316
- TIGRFAMs:   TIGR00008

Pfam domain/function: PF01176 eIF-1a; SSF50249 Nucleic_acid_OB

EC number: NA

Molecular weight: Translated: 8274; Mature: 8143

Theoretical pI: Translated: 8.99; Mature: 8.99

Prosite motif: PS50832 S1_IF1_TYPE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
5.6 %Met     (Translated Protein)
5.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.2 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKEDAIEVDGIVQEALPNAMFQVELENGHTVLAHISGKMRKFYIRILPGDKVRVELSPY
CCCCCCEEECHHHHHCCCCEEEEEEECCCCEEEEEECCCCEEEEEEECCCCEEEEEECCC
DLNRGRITYRMK
CCCCCEEEEEEC
>Mature Secondary Structure 
AKEDAIEVDGIVQEALPNAMFQVELENGHTVLAHISGKMRKFYIRILPGDKVRVELSPY
CCCCCEEECHHHHHCCCCEEEEEEECCCCEEEEEECCCCEEEEEEECCCCEEEEEECCC
DLNRGRITYRMK
CCCCCEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA