| Definition | Desulfovibrio desulfuricans subsp. desulfuricans str. G20 chromosome, complete genome. |
|---|---|
| Accession | NC_007519 |
| Length | 3,730,232 |
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The map label for this gene is 78358590
Identifier: 78358590
GI number: 78358590
Start: 3511620
End: 3512423
Strand: Direct
Name: 78358590
Synonym: Dde_3551
Alternate gene names: NA
Gene position: 3511620-3512423 (Clockwise)
Preceding gene: 78358589
Following gene: 78358591
Centisome position: 94.14
GC content: 62.56
Gene sequence:
>804_bases ATGGCCGCGCATGTCCGGCATCAGGCCGTCCCCGTGTCCGGCCTACGGCAACGGAGAACGCAGTTGTCCCGCAGATACGC TGTATACATGATTCCGCCGCACGGCAGCCCGCTGGAAGAATTCGGCCGCCGCTGGCTGGGCCGGACGCCTTCCGCGGTAC CCGACACAATGCCCTCCCATCCGGCACTGCGGGATTCATTCTGCGGGCAGAAAACAGAAAACCTGCTTGCCGGAACACGC CGGCGCGGGTTCCACGCCACCATACGGGCCCCGTTTGAGGCTGCACCGCGCATCACACCGGCGCAGCTTTCCGCCGCACT GGAAGAATTCTGCACAACACAGCCGCCGGTCTGCGGCCCGCCGCTGCGGCTGGCCTGTCTGGGAGCACAGGTGGCACTGG TGCCGGAACGCCCCTGCAAAGCCATCAGCAGACTGGCCGATGCCTGCCTGCGTTTTTTTGAACCGCTGCGTGCACCGCTC TGCCCCGCAGACATGGAACGTCACCGCATGAAGCCTCTCACAGAAAGACAGGAAAGATTGCTGATGCGCTTCGGCTATCC TTTTGTGCTTGAAGATTACCGCTTTTACATGGCCCTCACGGACAGAATCCGCGACACCGCATGCAGACGCGCACTGTGCG AAAAACTGGCGCCCCTCGTCGCTCCTTTTCTGCCCGGCGCACTGCACATCGGCGAACTGTGCCTTTTCCGTCAGGAAAAC CGTGTTTCTCCGTTCATATTGCAAAAACGCATTCCCCTTACCGGCCGGCAAAGCCCTGCGCGCAGACACCGGGCCCGCCT GTAG
Upstream 100 bases:
>100_bases CCCGTACCTTTCTGACGCGCAACAGGCACACCGCCGCCACATCTCCGTCACACGGCACAGGCACAACGGAACATCCCCCT TTTGCACCGGAGGACGCCTG
Downstream 100 bases:
>100_bases CCACGCCACCGCCCGTGCCGTTCTGATAACCGCGCCGTTCTGTTGAACCGCATGGCCGCCCGTGTTACGGTACCGACATC CTGAAAAAGTGAACAGGCAC
Product: hypothetical protein
Products: NA
Alternate protein names: Xylose Isomerase; Conserved Hypothethical Protein DUF
Number of amino acids: Translated: 267; Mature: 266
Protein sequence:
>267_residues MAAHVRHQAVPVSGLRQRRTQLSRRYAVYMIPPHGSPLEEFGRRWLGRTPSAVPDTMPSHPALRDSFCGQKTENLLAGTR RRGFHATIRAPFEAAPRITPAQLSAALEEFCTTQPPVCGPPLRLACLGAQVALVPERPCKAISRLADACLRFFEPLRAPL CPADMERHRMKPLTERQERLLMRFGYPFVLEDYRFYMALTDRIRDTACRRALCEKLAPLVAPFLPGALHIGELCLFRQEN RVSPFILQKRIPLTGRQSPARRHRARL
Sequences:
>Translated_267_residues MAAHVRHQAVPVSGLRQRRTQLSRRYAVYMIPPHGSPLEEFGRRWLGRTPSAVPDTMPSHPALRDSFCGQKTENLLAGTR RRGFHATIRAPFEAAPRITPAQLSAALEEFCTTQPPVCGPPLRLACLGAQVALVPERPCKAISRLADACLRFFEPLRAPL CPADMERHRMKPLTERQERLLMRFGYPFVLEDYRFYMALTDRIRDTACRRALCEKLAPLVAPFLPGALHIGELCLFRQEN RVSPFILQKRIPLTGRQSPARRHRARL >Mature_266_residues AAHVRHQAVPVSGLRQRRTQLSRRYAVYMIPPHGSPLEEFGRRWLGRTPSAVPDTMPSHPALRDSFCGQKTENLLAGTRR RGFHATIRAPFEAAPRITPAQLSAALEEFCTTQPPVCGPPLRLACLGAQVALVPERPCKAISRLADACLRFFEPLRAPLC PADMERHRMKPLTERQERLLMRFGYPFVLEDYRFYMALTDRIRDTACRRALCEKLAPLVAPFLPGALHIGELCLFRQENR VSPFILQKRIPLTGRQSPARRHRARL
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 30332; Mature: 30201
Theoretical pI: Translated: 11.20; Mature: 11.20
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
3.7 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 6.4 %Cys+Met (Translated Protein) 3.8 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 6.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAAHVRHQAVPVSGLRQRRTQLSRRYAVYMIPPHGSPLEEFGRRWLGRTPSAVPDTMPSH CCCCCCCCCCCHHHHHHHHHHHHHCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCC PALRDSFCGQKTENLLAGTRRRGFHATIRAPFEAAPRITPAQLSAALEEFCTTQPPVCGP CCHHHHHCCHHHHHHHHHHHCCCCEEEEECCHHCCCCCCHHHHHHHHHHHHCCCCCCCCC PLRLACLGAQVALVPERPCKAISRLADACLRFFEPLRAPLCPADMERHRMKPLTERQERL CHHHHHHCCEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHCCCHHHHHHHH LMRFGYPFVLEDYRFYMALTDRIRDTACRRALCEKLAPLVAPFLPGALHIGELCLFRQEN HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCC RVSPFILQKRIPLTGRQSPARRHRARL CCCHHHHHHCCCCCCCCCHHHHHHCCC >Mature Secondary Structure AAHVRHQAVPVSGLRQRRTQLSRRYAVYMIPPHGSPLEEFGRRWLGRTPSAVPDTMPSH CCCCCCCCCCHHHHHHHHHHHHHCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCC PALRDSFCGQKTENLLAGTRRRGFHATIRAPFEAAPRITPAQLSAALEEFCTTQPPVCGP CCHHHHHCCHHHHHHHHHHHCCCCEEEEECCHHCCCCCCHHHHHHHHHHHHCCCCCCCCC PLRLACLGAQVALVPERPCKAISRLADACLRFFEPLRAPLCPADMERHRMKPLTERQERL CHHHHHHCCEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHCCCHHHHHHHH LMRFGYPFVLEDYRFYMALTDRIRDTACRRALCEKLAPLVAPFLPGALHIGELCLFRQEN HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCC RVSPFILQKRIPLTGRQSPARRHRARL CCCHHHHHHCCCCCCCCCHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA