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The map label for this gene is vhcD [H]

Identifier: 78358566

GI number: 78358566

Start: 3486738

End: 3487202

Strand: Direct

Name: vhcD [H]

Synonym: Dde_3527

Alternate gene names: 78358566

Gene position: 3486738-3487202 (Clockwise)

Preceding gene: 78358565

Following gene: 78358567

Centisome position: 93.47

GC content: 63.44

Gene sequence:

>465_bases
ATGCCGGTACTAGAAGGAAAAGAACTGCGCATCATCGGATTTCTGTGCAACTGGTGCTCCTACGGCGGTGCCGACACCGC
AGGCGTGGGACGGTTTGCCCAGCCCACTGACCTGCGCATCGTGCGGCTGCCCTGCACGGGCCGCATCAACCCGCTGTTCA
TTGTGCGCGCCCTGCTGAACGGCACCGACGGGGTGCTCGTTTCAGGCTGCCACCCGCGCGACTGTCACTACACGGCGGGC
AACTTTTACGCCCGCAGACGTATGGAAGTGCTCAAGGCGCTGCTGCCGGTGCTGGGCATAGACCCGCTCCGGTTCGAGTA
CACATGGGTCTCCGCTTCCGAGGGCAACCGCTGGCAGACGGTGGTGCGGGAATTCACCGCCCAGATTCACGGACTGGGGC
CTGCTCCCGCCTTTGCGCAGGAAGCTTCCGAACAGGCACAGGCCGTTCTGAAAGCCGTCATCTAA

Upstream 100 bases:

>100_bases
TGTGTCAGGGATGCGGCATATGCGCCGTCACCTGCCCTCAGGGTGCCATTCAGCTGCAGCATTTCACAGACAACCAGATA
CTTGCCGAGGTCAACGCCCT

Downstream 100 bases:

>100_bases
CCGCGAGGAGTACACGATGCCGCAACTTGAATCTCTGAAAGACGCCATCGCAAAGGCACTGCCCGAACTGGACGTGGTTA
TCGCATGGGGGCGCGGGCTG

Product: hydrogenase, iron-sulfur cluster-binding subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 154; Mature: 153

Protein sequence:

>154_residues
MPVLEGKELRIIGFLCNWCSYGGADTAGVGRFAQPTDLRIVRLPCTGRINPLFIVRALLNGTDGVLVSGCHPRDCHYTAG
NFYARRRMEVLKALLPVLGIDPLRFEYTWVSASEGNRWQTVVREFTAQIHGLGPAPAFAQEASEQAQAVLKAVI

Sequences:

>Translated_154_residues
MPVLEGKELRIIGFLCNWCSYGGADTAGVGRFAQPTDLRIVRLPCTGRINPLFIVRALLNGTDGVLVSGCHPRDCHYTAG
NFYARRRMEVLKALLPVLGIDPLRFEYTWVSASEGNRWQTVVREFTAQIHGLGPAPAFAQEASEQAQAVLKAVI
>Mature_153_residues
PVLEGKELRIIGFLCNWCSYGGADTAGVGRFAQPTDLRIVRLPCTGRINPLFIVRALLNGTDGVLVSGCHPRDCHYTAGN
FYARRRMEVLKALLPVLGIDPLRFEYTWVSASEGNRWQTVVREFTAQIHGLGPAPAFAQEASEQAQAVLKAVI

Specific function: Unknown

COG id: COG1908

COG function: function code C; Coenzyme F420-reducing hydrogenase, delta subunit

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the mvhD/vhuD family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003813 [H]

Pfam domain/function: PF02662 FlpD [H]

EC number: NA

Molecular weight: Translated: 16928; Mature: 16797

Theoretical pI: Translated: 8.49; Mature: 8.49

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.2 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
3.3 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPVLEGKELRIIGFLCNWCSYGGADTAGVGRFAQPTDLRIVRLPCTGRINPLFIVRALLN
CCCCCCCCEEEHEEHHHHHCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHC
GTDGVLVSGCHPRDCHYTAGNFYARRRMEVLKALLPVLGIDPLRFEYTWVSASEGNRWQT
CCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCHHHH
VVREFTAQIHGLGPAPAFAQEASEQAQAVLKAVI
HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
PVLEGKELRIIGFLCNWCSYGGADTAGVGRFAQPTDLRIVRLPCTGRINPLFIVRALLN
CCCCCCCEEEHEEHHHHHCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHC
GTDGVLVSGCHPRDCHYTAGNFYARRRMEVLKALLPVLGIDPLRFEYTWVSASEGNRWQT
CCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCHHHH
VVREFTAQIHGLGPAPAFAQEASEQAQAVLKAVI
HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1603063 [H]