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The map label for this gene is dcrA [H]

Identifier: 78358286

GI number: 78358286

Start: 3243157

End: 3244962

Strand: Direct

Name: dcrA [H]

Synonym: Dde_3246

Alternate gene names: 78358286

Gene position: 3243157-3244962 (Clockwise)

Preceding gene: 78358285

Following gene: 78358299

Centisome position: 86.94

GC content: 58.14

Gene sequence:

>1806_bases
ATGCTCAGGAAATACTCTATAGGAACGCGAGTAATCGCTCTTGTCGCCTTGCTGGTGCTGTGCATCGTGGGCATTATTTC
AGCCTCGCTGAAAATGCAGGATTCAGTTGTTGCGTACAACATCAAAGAAACTGAAGCCGTGATGCTCAGAGGTGAACGGA
CCAAACTCAAAGTCGCCACGGACAGCATAGCCACAACCATAGGCGACATACTGAGTGACTCCGCAAGCAAGGAAGAACAG
CTGGAATTCATCCGCACCGCGGTGGAAAACGTCCGCTTTGAGGATGACAAGTCCGGCTACTTTTTTGTGTACGAAGGGAC
AACGGTAGTCGCACTGCCCATCAAAAAATCCGTCATCGGGCAGGATCTGAGCTCGGTCACGGACAGTGACGGAGTGCGTT
ACGTTCATGAGCTGAGCAAGGCCGCCGGTTCGGGCGGCGGTTTTGTCCGCTATGTCTTCGACAAACCCGGGCAGGGCCTG
CAGCCCAAGCTGGCTTACGCCCGCCCCATTTCCGGTACGCCGTACTGGATAGGGACCGGAGTATACATAGACAATATTGA
CGCGGAACGAGAACGGCTGGAAACAGCCACGGGCGACATGGTCAGCAGCGCCGTTTACACGCTGACGGGGTCCATAGCCG
CAGCCCTGATACTGCTGGTGCTGCCTGTGTGCGCGCTTATCATTGTCAGCATTGTCAGACCCATCCGCAGCGCCACCGAG
GCAGCGCACCAGATTGCACAGGGCAATCTGGACATCACGCTGGACGACAGCGGCAAAGATGAAGTGGCGCGTCTGCAAAG
CTCGCTTAACAGCATGGTACGCGAACTTGTGGCCACCATAGAAACTGTGAAGCAGAAGGAAGCGGAAGCCAACCGTCAGG
CCGAAGCCGCGCATCAGGCAACCGAACAGACAAAGGAAGCCATGGCCCGCGCAGAGGCCGCCACCCGCGACGGCATGAAT
GCCGCGGCACAGCGTCTGGAGGGTGTGGTGGCCGCCATTACCGCCGCCACGGGCGATCTGGACACCCGCAGCAACGAAAT
AAGCCACGGCACCGACATGCAGATGGCGCGCATCAATGAAACCGCCACAGCCATGGAAGAAATGAACGCCACCGTGATGG
AAGTGGCGCGCAACGCCGCCGAGGCAGCGGAACAGACCGATCTTTCGCGCATAAAGGCGCAGGAAGGGGCCGAGGCGGTA
TCTGCCACCATCAATGCCATGAATGACCTGAAAGCGCTCGCTGACGGGCTGAAGGAAAACATGCACCGTCTGGGCGACCA
GTCGCAATCCATCGGCCATGTGATGAGTGTGATCAACGACATAGCCGACCAGACCAACCTGCTGGCGCTTAACGCCGCCA
TTGAAGCCGCCCGCGCGGGTGATGCCGGACGCGGTTTTGCCGTGGTGGCCGACGAGGTGAGAAAACTGGCCGAAAAGACC
ATGAATGCCACCAAGGAAGTGGGTGACAGCATTGTGGCCATCCAGCAACTGGCAAAAACAAACGTGGACGGCATGACAGA
AGCCTCTCAGGCCATCGACAAGGCCGTAGCCCGTTCGGCATCTTCCGGTGAAATGCTTTCAGAAATAGTCCGTCTGGCGC
AGGATGCCGCAGGTCAGGTGCAGTCCATTGCCACCGCAGCCGAAGAACAGTCCGCAGCGAGCGAGGAAATAGCCCGCAGT
GTGGAAGAAGTGAACACCCTTGCCCAGGACAACGGGCGTATGATCGCAGAATCGGTGCAGGACATCGGGCAGCTGGCCGA
GCAGGCAGTCACGCTGCGCAGCCTTGTGGACGAGCTTAAAAAATAA

Upstream 100 bases:

>100_bases
GTTATTTTCCGGCCTATTATTTTATTTACACTGGAAATCACTGCAGATATTCTTTAGTTAACACTTACATACACTATCAT
ACAGTCCCTGCGGAGGACCT

Downstream 100 bases:

>100_bases
CCTGTTTCCGGACCGGTCAGGCACACGGCGGTACGGCGCTGTCCGCAGCAGAAGCCGTCCGCACCTGCACACCGCACAAT
TCAGGCGGCCACCTCGGGGT

Product: methyl-accepting chemotaxis sensory transducer

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 601; Mature: 601

Protein sequence:

>601_residues
MLRKYSIGTRVIALVALLVLCIVGIISASLKMQDSVVAYNIKETEAVMLRGERTKLKVATDSIATTIGDILSDSASKEEQ
LEFIRTAVENVRFEDDKSGYFFVYEGTTVVALPIKKSVIGQDLSSVTDSDGVRYVHELSKAAGSGGGFVRYVFDKPGQGL
QPKLAYARPISGTPYWIGTGVYIDNIDAERERLETATGDMVSSAVYTLTGSIAAALILLVLPVCALIIVSIVRPIRSATE
AAHQIAQGNLDITLDDSGKDEVARLQSSLNSMVRELVATIETVKQKEAEANRQAEAAHQATEQTKEAMARAEAATRDGMN
AAAQRLEGVVAAITAATGDLDTRSNEISHGTDMQMARINETATAMEEMNATVMEVARNAAEAAEQTDLSRIKAQEGAEAV
SATINAMNDLKALADGLKENMHRLGDQSQSIGHVMSVINDIADQTNLLALNAAIEAARAGDAGRGFAVVADEVRKLAEKT
MNATKEVGDSIVAIQQLAKTNVDGMTEASQAIDKAVARSASSGEMLSEIVRLAQDAAGQVQSIATAAEEQSAASEEIARS
VEEVNTLAQDNGRMIAESVQDIGQLAEQAVTLRSLVDELKK

Sequences:

>Translated_601_residues
MLRKYSIGTRVIALVALLVLCIVGIISASLKMQDSVVAYNIKETEAVMLRGERTKLKVATDSIATTIGDILSDSASKEEQ
LEFIRTAVENVRFEDDKSGYFFVYEGTTVVALPIKKSVIGQDLSSVTDSDGVRYVHELSKAAGSGGGFVRYVFDKPGQGL
QPKLAYARPISGTPYWIGTGVYIDNIDAERERLETATGDMVSSAVYTLTGSIAAALILLVLPVCALIIVSIVRPIRSATE
AAHQIAQGNLDITLDDSGKDEVARLQSSLNSMVRELVATIETVKQKEAEANRQAEAAHQATEQTKEAMARAEAATRDGMN
AAAQRLEGVVAAITAATGDLDTRSNEISHGTDMQMARINETATAMEEMNATVMEVARNAAEAAEQTDLSRIKAQEGAEAV
SATINAMNDLKALADGLKENMHRLGDQSQSIGHVMSVINDIADQTNLLALNAAIEAARAGDAGRGFAVVADEVRKLAEKT
MNATKEVGDSIVAIQQLAKTNVDGMTEASQAIDKAVARSASSGEMLSEIVRLAQDAAGQVQSIATAAEEQSAASEEIARS
VEEVNTLAQDNGRMIAESVQDIGQLAEQAVTLRSLVDELKK
>Mature_601_residues
MLRKYSIGTRVIALVALLVLCIVGIISASLKMQDSVVAYNIKETEAVMLRGERTKLKVATDSIATTIGDILSDSASKEEQ
LEFIRTAVENVRFEDDKSGYFFVYEGTTVVALPIKKSVIGQDLSSVTDSDGVRYVHELSKAAGSGGGFVRYVFDKPGQGL
QPKLAYARPISGTPYWIGTGVYIDNIDAERERLETATGDMVSSAVYTLTGSIAAALILLVLPVCALIIVSIVRPIRSATE
AAHQIAQGNLDITLDDSGKDEVARLQSSLNSMVRELVATIETVKQKEAEANRQAEAAHQATEQTKEAMARAEAATRDGMN
AAAQRLEGVVAAITAATGDLDTRSNEISHGTDMQMARINETATAMEEMNATVMEVARNAAEAAEQTDLSRIKAQEGAEAV
SATINAMNDLKALADGLKENMHRLGDQSQSIGHVMSVINDIADQTNLLALNAAIEAARAGDAGRGFAVVADEVRKLAEKT
MNATKEVGDSIVAIQQLAKTNVDGMTEASQAIDKAVARSASSGEMLSEIVRLAQDAAGQVQSIATAAEEQSAASEEIARS
VEEVNTLAQDNGRMIAESVQDIGQLAEQAVTLRSLVDELKK

Specific function: Mediates Taxis To The Sugars Ribose And Galactose VIa An Interaction With The Periplasmic Ribose- Or Galactose-Binding Proteins. Chemotactic-Signal Transducers Respond To Changes In The Concentration Of Attractants And Repellents In The Environment, Trans

COG id: COG0840

COG function: function code NT; Methyl-accepting chemotaxis protein

Gene ontology:

Cell location: Cell membrane; Single-pass membrane protein; Periplasmic side (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PAS (PER-ARNT-SIM) domain [H]

Homologues:

Organism=Escherichia coli, GI1787690, Length=467, Percent_Identity=29.1220556745182, Blast_Score=148, Evalue=8e-37,
Organism=Escherichia coli, GI2367378, Length=430, Percent_Identity=28.1395348837209, Blast_Score=130, Evalue=2e-31,
Organism=Escherichia coli, GI1788194, Length=392, Percent_Identity=30.3571428571429, Blast_Score=130, Evalue=3e-31,
Organism=Escherichia coli, GI1788195, Length=345, Percent_Identity=30.4347826086957, Blast_Score=124, Evalue=2e-29,
Organism=Escherichia coli, GI1789453, Length=237, Percent_Identity=32.0675105485232, Blast_Score=111, Evalue=1e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004090
- InterPro:   IPR004089
- InterPro:   IPR003660
- InterPro:   IPR001610
- InterPro:   IPR000014
- InterPro:   IPR000700
- InterPro:   IPR013767 [H]

Pfam domain/function: PF00672 HAMP; PF00015 MCPsignal; PF00989 PAS [H]

EC number: NA

Molecular weight: Translated: 63906; Mature: 63906

Theoretical pI: Translated: 4.49; Mature: 4.49

Prosite motif: PS50885 HAMP ; PS50111 CHEMOTAXIS_TRANSDUC_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLRKYSIGTRVIALVALLVLCIVGIISASLKMQDSVVAYNIKETEAVMLRGERTKLKVAT
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCHHHHHHEECCCCEEEEHH
DSIATTIGDILSDSASKEEQLEFIRTAVENVRFEDDKSGYFFVYEGTTVVALPIKKSVIG
HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCEEEEECCHHHHHH
QDLSSVTDSDGVRYVHELSKAAGSGGGFVRYVFDKPGQGLQPKLAYARPISGTPYWIGTG
HHHHHCCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCHHHCCCCCCCCEEEECC
VYIDNIDAERERLETATGDMVSSAVYTLTGSIAAALILLVLPVCALIIVSIVRPIRSATE
EEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AAHQIAQGNLDITLDDSGKDEVARLQSSLNSMVRELVATIETVKQKEAEANRQAEAAHQA
HHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TEQTKEAMARAEAATRDGMNAAAQRLEGVVAAITAATGDLDTRSNEISHGTDMQMARINE
HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHH
TATAMEEMNATVMEVARNAAEAAEQTDLSRIKAQEGAEAVSATINAMNDLKALADGLKEN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
MHRLGDQSQSIGHVMSVINDIADQTNLLALNAAIEAARAGDAGRGFAVVADEVRKLAEKT
HHHHCCCHHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHH
MNATKEVGDSIVAIQQLAKTNVDGMTEASQAIDKAVARSASSGEMLSEIVRLAQDAAGQV
HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
QSIATAAEEQSAASEEIARSVEEVNTLAQDNGRMIAESVQDIGQLAEQAVTLRSLVDELK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC
K
C
>Mature Secondary Structure
MLRKYSIGTRVIALVALLVLCIVGIISASLKMQDSVVAYNIKETEAVMLRGERTKLKVAT
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCHHHHHHEECCCCEEEEHH
DSIATTIGDILSDSASKEEQLEFIRTAVENVRFEDDKSGYFFVYEGTTVVALPIKKSVIG
HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCEEEEECCHHHHHH
QDLSSVTDSDGVRYVHELSKAAGSGGGFVRYVFDKPGQGLQPKLAYARPISGTPYWIGTG
HHHHHCCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCHHHCCCCCCCCEEEECC
VYIDNIDAERERLETATGDMVSSAVYTLTGSIAAALILLVLPVCALIIVSIVRPIRSATE
EEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AAHQIAQGNLDITLDDSGKDEVARLQSSLNSMVRELVATIETVKQKEAEANRQAEAAHQA
HHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TEQTKEAMARAEAATRDGMNAAAQRLEGVVAAITAATGDLDTRSNEISHGTDMQMARINE
HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHH
TATAMEEMNATVMEVARNAAEAAEQTDLSRIKAQEGAEAVSATINAMNDLKALADGLKEN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
MHRLGDQSQSIGHVMSVINDIADQTNLLALNAAIEAARAGDAGRGFAVVADEVRKLAEKT
HHHHCCCHHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHH
MNATKEVGDSIVAIQQLAKTNVDGMTEASQAIDKAVARSASSGEMLSEIVRLAQDAAGQV
HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
QSIATAAEEQSAASEEIARSVEEVNTLAQDNGRMIAESVQDIGQLAEQAVTLRSLVDELK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC
K
C

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 1548224 [H]