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The map label for this gene is psd

Identifier: 78358256

GI number: 78358256

Start: 3206166

End: 3206822

Strand: Direct

Name: psd

Synonym: Dde_3216

Alternate gene names: 78358256

Gene position: 3206166-3206822 (Clockwise)

Preceding gene: 78358255

Following gene: 78358257

Centisome position: 85.95

GC content: 57.38

Gene sequence:

>657_bases
ATGCAGAAAGCTACCCATTCCATAACGCCTGAAGGTTTTCCCGTCATCGGTCTGACCGCGCTTGCCGCACTGGTCTTCGC
CATCATCGACTGCTGGTTCATGGCCGTTGTGTTTCTGCTGCTGTGCTGGTTCAGCGTGCATTTTTTCCGCGATCCGGAAA
GGGTGGTGCCTTCGGCCCCCGGCGCAGGGGTAAGCCCAGCAGACGGCCGCATCATAAAAGTGCAGCCCATGCCCGACCCT
TTCACCGGAGAACCGCGCATGTGCGTCTGCATTTTCATGAATGTCTTCAACGTGCATGTAAACCGCTTTCCGGTCAGCGG
CACCGTGCAGAGCATTGCCTACCATCCGGGCAAGTACTTCAATGCGTCGTGGGACAAAGCTTCGACTGACAACGAACGCT
GCGCCTATGACATAGTGGACGCCGACGGCCTGCGCTGGAGCATGGTGCAGATAGCCGGACTCATCGCCAGACGCATAGTA
TGCAGGGTGGAAGAAGGCGACACGCTCAGACGCGGCGAACGCTGCGGCATGATCAGGTTCGGTTCGCGGGTTGACGTTTA
CCTGCCGGAAGAGTATGAACCAAAGGTCACAGTGGGTGAAACCGTTTTTGCAGGGCAGACAGTACTGGCCGCAAAAAAGG
AGCAACCGGCGGAATAA

Upstream 100 bases:

>100_bases
CACGATAACGCATTGCCTTTTGCCGCGTTTTGACATACCGATTGCTACCGTTCAACCTCACACAGCTGTGCCGGAGACAG
GTTCCGGCAGGAACATCATC

Downstream 100 bases:

>100_bases
TGCGCCGGACAACACCCCGCAAGGAATAACGAGACAATGGACACACAGACCACTCCCACCCGCAGAGGGGTGTACATTCT
TCCCAACCTGTTTACCACGG

Product: phosphatidylserine decarboxylase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 218; Mature: 218

Protein sequence:

>218_residues
MQKATHSITPEGFPVIGLTALAALVFAIIDCWFMAVVFLLLCWFSVHFFRDPERVVPSAPGAGVSPADGRIIKVQPMPDP
FTGEPRMCVCIFMNVFNVHVNRFPVSGTVQSIAYHPGKYFNASWDKASTDNERCAYDIVDADGLRWSMVQIAGLIARRIV
CRVEEGDTLRRGERCGMIRFGSRVDVYLPEEYEPKVTVGETVFAGQTVLAAKKEQPAE

Sequences:

>Translated_218_residues
MQKATHSITPEGFPVIGLTALAALVFAIIDCWFMAVVFLLLCWFSVHFFRDPERVVPSAPGAGVSPADGRIIKVQPMPDP
FTGEPRMCVCIFMNVFNVHVNRFPVSGTVQSIAYHPGKYFNASWDKASTDNERCAYDIVDADGLRWSMVQIAGLIARRIV
CRVEEGDTLRRGERCGMIRFGSRVDVYLPEEYEPKVTVGETVFAGQTVLAAKKEQPAE
>Mature_218_residues
MQKATHSITPEGFPVIGLTALAALVFAIIDCWFMAVVFLLLCWFSVHFFRDPERVVPSAPGAGVSPADGRIIKVQPMPDP
FTGEPRMCVCIFMNVFNVHVNRFPVSGTVQSIAYHPGKYFNASWDKASTDNERCAYDIVDADGLRWSMVQIAGLIARRIV
CRVEEGDTLRRGERCGMIRFGSRVDVYLPEEYEPKVTVGETVFAGQTVLAAKKEQPAE

Specific function: Unknown

COG id: COG0688

COG function: function code I; Phosphatidylserine decarboxylase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phosphatidylserine decarboxylase family. Type 3 subfamily

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): PSD_DESDG (Q30WD6)

Other databases:

- EMBL:   CP000112
- RefSeq:   YP_389705.1
- STRING:   Q30WD6
- GeneID:   3758191
- GenomeReviews:   CP000112_GR
- KEGG:   dde:Dde_3216
- NMPDR:   fig|207559.3.peg.2939
- eggNOG:   COG0688
- HOGENOM:   HBG541103
- OMA:   IFMSVFN
- ProtClustDB:   PRK05305
- BioCyc:   DDES207559:DDE_3216-MONOMER
- HAMAP:   MF_00664
- InterPro:   IPR003817
- InterPro:   IPR004428
- TIGRFAMs:   TIGR00164

Pfam domain/function: PF02666 PS_Dcarbxylase

EC number: =4.1.1.65

Molecular weight: Translated: 24219; Mature: 24219

Theoretical pI: Translated: 6.50; Mature: 6.50

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.2 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
6.4 %Cys+Met (Translated Protein)
3.2 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
6.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQKATHSITPEGFPVIGLTALAALVFAIIDCWFMAVVFLLLCWFSVHFFRDPERVVPSAP
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCC
GAGVSPADGRIIKVQPMPDPFTGEPRMCVCIFMNVFNVHVNRFPVSGTVQSIAYHPGKYF
CCCCCCCCCEEEEEECCCCCCCCCCCEEHHHHHHHHHHHHEECCCCCHHHHHHCCCCCCC
NASWDKASTDNERCAYDIVDADGLRWSMVQIAGLIARRIVCRVEEGDTLRRGERCGMIRF
CCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHEECCCCCCHHCCCCCCEEEE
GSRVDVYLPEEYEPKVTVGETVFAGQTVLAAKKEQPAE
CCEEEEEECCCCCCCEEECCEEECCCEEEEECCCCCCC
>Mature Secondary Structure
MQKATHSITPEGFPVIGLTALAALVFAIIDCWFMAVVFLLLCWFSVHFFRDPERVVPSAP
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCC
GAGVSPADGRIIKVQPMPDPFTGEPRMCVCIFMNVFNVHVNRFPVSGTVQSIAYHPGKYF
CCCCCCCCCEEEEEECCCCCCCCCCCEEHHHHHHHHHHHHEECCCCCHHHHHHCCCCCCC
NASWDKASTDNERCAYDIVDADGLRWSMVQIAGLIARRIVCRVEEGDTLRRGERCGMIRF
CCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHEECCCCCCHHCCCCCCEEEE
GSRVDVYLPEEYEPKVTVGETVFAGQTVLAAKKEQPAE
CCEEEEEECCCCCCCEEECCEEECCCEEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA