| Definition | Desulfovibrio desulfuricans subsp. desulfuricans str. G20 chromosome, complete genome. |
|---|---|
| Accession | NC_007519 |
| Length | 3,730,232 |
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The map label for this gene is 78358251
Identifier: 78358251
GI number: 78358251
Start: 3202219
End: 3203064
Strand: Direct
Name: 78358251
Synonym: Dde_3211
Alternate gene names: NA
Gene position: 3202219-3203064 (Clockwise)
Preceding gene: 78358250
Following gene: 78358255
Centisome position: 85.85
GC content: 58.16
Gene sequence:
>846_bases ATGACCAAAATAAGCAGACGACAGGCTCTTGGTGTAGTCGGCGGCAGCCTGATGGCTGGTGCAGTGGCAGGCGGAACGCT GGTGGCAGGCGGCATGACCGGACAGGCGCATGCGGCGGCACCCGGCACCGCGGCACGGTTTCAGTTCGAGGAACAGCCGT TTTCGTGGCAGCCGCACATTCTTGACCCTGAAGAATGCGCCGTTGCCGCGTATGACGGTTACTGGCACAAAGGTTTCGGC TGCGGTTACGGCGTGTTCTACGGCATTGTAGGCATGATGGCCGAAAAATACGGCGCACCGTATAACCAGTTCCCCTTCAG CATGCTCGAAGTGGGCAAAAGCGGAATTTCAGGATGGGCAACCATCTGCGGCGCCCTTCTGGGCGGTGCCAGCGCATACG CTCTGTTCTGGGGACGCAAGGAACGCGACCCCATGGTGACCGAACTGTACCGCTGGTACGAGCAGACCGCGTTCCCAATT TTCAACCCCGGCACCGCAGCCAAAGGCTTTGCCGGCGACCTGCCCACCAGCATAGCCCATTCACCGCTGTGCCACGTTTC TGTGAGCAAATGGTGCTACGAAACCGGCATAGCCGAAAAGAGCAAAGAGCGCAGCGAACGCTGTGCACGCATAACTGCCG ACGTGGCCAAAAAAGCAGTTGAAATAATGAACGCCAAACAGACAGGCGCATTTGTGGTCGAGCATAAGACACCTGAATCG GTGGAATACTGCGGCAGCTGCCACGGTGCCGGCAAAGAATCGCCCATAGTGAAAGGCAAGATGGACTGTGCTCCCTGCCA CTCCGGCAGCGAACACACACAGGACAAATACAACAACCACCCGTAA
Upstream 100 bases:
>100_bases TATTTTTCACAAGCTGGCACGCACGTTGCACATTCCCTTGCACAAATCACTACCTTCCGGTGCCCGCCGGAAGCTGATTC AGAGCAAAGGGAGACTCAAC
Downstream 100 bases:
>100_bases GATCATTCCGCCCGCTACCGGTGACATACGCCCGCAGGCAGAACAGGCAGTCCCCGCCTGCGGCGCAGCACCGGTACACG GCCGGTTTCTGCATACCCGA
Product: split soret cytochrome c
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 281; Mature: 280
Protein sequence:
>281_residues MTKISRRQALGVVGGSLMAGAVAGGTLVAGGMTGQAHAAAPGTAARFQFEEQPFSWQPHILDPEECAVAAYDGYWHKGFG CGYGVFYGIVGMMAEKYGAPYNQFPFSMLEVGKSGISGWATICGALLGGASAYALFWGRKERDPMVTELYRWYEQTAFPI FNPGTAAKGFAGDLPTSIAHSPLCHVSVSKWCYETGIAEKSKERSERCARITADVAKKAVEIMNAKQTGAFVVEHKTPES VEYCGSCHGAGKESPIVKGKMDCAPCHSGSEHTQDKYNNHP
Sequences:
>Translated_281_residues MTKISRRQALGVVGGSLMAGAVAGGTLVAGGMTGQAHAAAPGTAARFQFEEQPFSWQPHILDPEECAVAAYDGYWHKGFG CGYGVFYGIVGMMAEKYGAPYNQFPFSMLEVGKSGISGWATICGALLGGASAYALFWGRKERDPMVTELYRWYEQTAFPI FNPGTAAKGFAGDLPTSIAHSPLCHVSVSKWCYETGIAEKSKERSERCARITADVAKKAVEIMNAKQTGAFVVEHKTPES VEYCGSCHGAGKESPIVKGKMDCAPCHSGSEHTQDKYNNHP >Mature_280_residues TKISRRQALGVVGGSLMAGAVAGGTLVAGGMTGQAHAAAPGTAARFQFEEQPFSWQPHILDPEECAVAAYDGYWHKGFGC GYGVFYGIVGMMAEKYGAPYNQFPFSMLEVGKSGISGWATICGALLGGASAYALFWGRKERDPMVTELYRWYEQTAFPIF NPGTAAKGFAGDLPTSIAHSPLCHVSVSKWCYETGIAEKSKERSERCARITADVAKKAVEIMNAKQTGAFVVEHKTPESV EYCGSCHGAGKESPIVKGKMDCAPCHSGSEHTQDKYNNHP
Specific function: Diheme cytochrome c which may be involved in sulfate reduction [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR010181 - InterPro: IPR006311 [H]
Pfam domain/function: PF09719 C_GCAxxG_C_C [H]
EC number: NA
Molecular weight: Translated: 30109; Mature: 29978
Theoretical pI: Translated: 7.47; Mature: 7.47
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
3.6 %Cys (Translated Protein) 3.2 %Met (Translated Protein) 6.8 %Cys+Met (Translated Protein) 3.6 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 6.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTKISRRQALGVVGGSLMAGAVAGGTLVAGGMTGQAHAAAPGTAARFQFEEQPFSWQPHI CCCCHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCHHEEEECCCCCCCCCCC LDPEECAVAAYDGYWHKGFGCGYGVFYGIVGMMAEKYGAPYNQFPFSMLEVGKSGISGWA CCHHHHEEEEECCCEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCHHHH TICGALLGGASAYALFWGRKERDPMVTELYRWYEQTAFPIFNPGTAAKGFAGDLPTSIAH HHHHHHHCCCHHEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHC SPLCHVSVSKWCYETGIAEKSKERSERCARITADVAKKAVEIMNAKQTGAFVVEHKTPES CCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCHH VEYCGSCHGAGKESPIVKGKMDCAPCHSGSEHTQDKYNNHP HHHHHCCCCCCCCCCCEECCCCCCCCCCCCHHHHHHCCCCC >Mature Secondary Structure TKISRRQALGVVGGSLMAGAVAGGTLVAGGMTGQAHAAAPGTAARFQFEEQPFSWQPHI CCCHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCHHEEEECCCCCCCCCCC LDPEECAVAAYDGYWHKGFGCGYGVFYGIVGMMAEKYGAPYNQFPFSMLEVGKSGISGWA CCHHHHEEEEECCCEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCHHHH TICGALLGGASAYALFWGRKERDPMVTELYRWYEQTAFPIFNPGTAAKGFAGDLPTSIAH HHHHHHHCCCHHEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHC SPLCHVSVSKWCYETGIAEKSKERSERCARITADVAKKAVEIMNAKQTGAFVVEHKTPES CCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCHH VEYCGSCHGAGKESPIVKGKMDCAPCHSGSEHTQDKYNNHP HHHHHCCCCCCCCCCCEECCCCCCCCCCCCHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9346301; 1646022 [H]