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The map label for this gene is rimP

Identifier: 78358200

GI number: 78358200

Start: 3146501

End: 3147022

Strand: Direct

Name: rimP

Synonym: Dde_3160

Alternate gene names: 78358200

Gene position: 3146501-3147022 (Clockwise)

Preceding gene: 78358188

Following gene: 78358201

Centisome position: 84.35

GC content: 55.56

Gene sequence:

>522_bases
ATGCATATGACCGTCACAACAATTCACGAACAACTGCTGGAAATCATCACCCCCGTCATCCGGTCCTTCGACCTTGAGTT
GTGGGGCATGGACTTTATTCAGGGCGGCAAGGCCGTTCTGCGTATATATATTGACGGACCCGACGGCGTTACCATCGACC
AGTGCGCCACTGTCTCGCGGCATATCGGGCTGGCACTGGAAGTCGAAGACATCATTGCCGGGGCTTACAACCTCGAGGTG
TCGTCCCCGGGACTGGAACGGCCTTTGTTCAGCGCGGCACAGCTTGCCGCCTATAAAGGACACAAGGCAGAACTGGTGCT
GCGCGCCCCCTGTGCGCAGTTTCCCGGACGGAAAAAATTTACCGGCGTTGTCGGAAACGTGGAAGGCGAAAACTTCACTC
TGCAGATAGACCCGCTGAAAGGCGGCGACAACCTGCAGGAAGAACTCAGCGCGCACTGGGACGATGTGAAAAAAGCCAGA
CTGATCTACGATTTTGACAGCGAAAAAGGCCAGAAGCGCTAA

Upstream 100 bases:

>100_bases
ATCACCGGCGGACATTGATACATCCTGTGGCCGCTAAGCGGCTGAACGCGGGGTGGCCGGCAAGGCCCCCTTTTTTTTTG
CGGCAAGACCGCATGGTACG

Downstream 100 bases:

>100_bases
CGGCCGCCCGGACATATCGAGTCGGAGGAATTCCCCATGAGCATGGAATTGAAAAAAGCCATAGACCAGATCAGCAAAGA
CCGGGGGCTGGACCGGGCAC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 173; Mature: 173

Protein sequence:

>173_residues
MHMTVTTIHEQLLEIITPVIRSFDLELWGMDFIQGGKAVLRIYIDGPDGVTIDQCATVSRHIGLALEVEDIIAGAYNLEV
SSPGLERPLFSAAQLAAYKGHKAELVLRAPCAQFPGRKKFTGVVGNVEGENFTLQIDPLKGGDNLQEELSAHWDDVKKAR
LIYDFDSEKGQKR

Sequences:

>Translated_173_residues
MHMTVTTIHEQLLEIITPVIRSFDLELWGMDFIQGGKAVLRIYIDGPDGVTIDQCATVSRHIGLALEVEDIIAGAYNLEV
SSPGLERPLFSAAQLAAYKGHKAELVLRAPCAQFPGRKKFTGVVGNVEGENFTLQIDPLKGGDNLQEELSAHWDDVKKAR
LIYDFDSEKGQKR
>Mature_173_residues
MHMTVTTIHEQLLEIITPVIRSFDLELWGMDFIQGGKAVLRIYIDGPDGVTIDQCATVSRHIGLALEVEDIIAGAYNLEV
SSPGLERPLFSAAQLAAYKGHKAELVLRAPCAQFPGRKKFTGVVGNVEGENFTLQIDPLKGGDNLQEELSAHWDDVKKAR
LIYDFDSEKGQKR

Specific function: Required for maturation of 30S ribosomal subunits

COG id: COG0779

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rimP family

Homologues:

Organism=Escherichia coli, GI226510978, Length=161, Percent_Identity=40.3726708074534, Blast_Score=119, Evalue=8e-29,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RIMP_DESDG (Q30WJ2)

Other databases:

- EMBL:   CP000112
- RefSeq:   YP_389649.1
- ProteinModelPortal:   Q30WJ2
- SMR:   Q30WJ2
- STRING:   Q30WJ2
- GeneID:   3758135
- GenomeReviews:   CP000112_GR
- KEGG:   dde:Dde_3160
- NMPDR:   fig|207559.3.peg.3749
- eggNOG:   COG0779
- HOGENOM:   HBG668072
- OMA:   HENNIIN
- BioCyc:   DDES207559:DDE_3160-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_01077
- InterPro:   IPR003728

Pfam domain/function: PF02576 DUF150

EC number: NA

Molecular weight: Translated: 19135; Mature: 19135

Theoretical pI: Translated: 5.04; Mature: 5.04

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHMTVTTIHEQLLEIITPVIRSFDLELWGMDFIQGGKAVLRIYIDGPDGVTIDQCATVSR
CCEEHHHHHHHHHHHHHHHHHHCCCEEECHHHHCCCEEEEEEEEECCCCCCHHHHHHHHH
HIGLALEVEDIIAGAYNLEVSSPGLERPLFSAAQLAAYKGHKAELVLRAPCAQFPGRKKF
HCCEEEEHHHHHCCEEEEEECCCCCCCHHHHHHHHHHCCCCCEEEEEECCHHHCCCCCEE
TGVVGNVEGENFTLQIDPLKGGDNLQEELSAHWDDVKKARLIYDFDSEKGQKR
EEEEECCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHEEEEEEECCCCCCCC
>Mature Secondary Structure
MHMTVTTIHEQLLEIITPVIRSFDLELWGMDFIQGGKAVLRIYIDGPDGVTIDQCATVSR
CCEEHHHHHHHHHHHHHHHHHHCCCEEECHHHHCCCEEEEEEEEECCCCCCHHHHHHHHH
HIGLALEVEDIIAGAYNLEVSSPGLERPLFSAAQLAAYKGHKAELVLRAPCAQFPGRKKF
HCCEEEEHHHHHCCEEEEEECCCCCCCHHHHHHHHHHCCCCCEEEEEECCHHHCCCCCEE
TGVVGNVEGENFTLQIDPLKGGDNLQEELSAHWDDVKKARLIYDFDSEKGQKR
EEEEECCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHEEEEEEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA