| Definition | Desulfovibrio desulfuricans subsp. desulfuricans str. G20 chromosome, complete genome. |
|---|---|
| Accession | NC_007519 |
| Length | 3,730,232 |
Click here to switch to the map view.
The map label for this gene is ntrY [H]
Identifier: 78358040
GI number: 78358040
Start: 2984054
End: 2986255
Strand: Direct
Name: ntrY [H]
Synonym: Dde_3000
Alternate gene names: 78358040
Gene position: 2984054-2986255 (Clockwise)
Preceding gene: 78358039
Following gene: 78358041
Centisome position: 80.0
GC content: 59.45
Gene sequence:
>2202_bases ATGACAGACGAACAGAGCACCATACGGGTAAGCGTGGCGGACACGCGTGAACGCAAACGCCGCCAGCGTGAACTCCTTCT TGCCGCCGTGGCTTTTCTTGCCGTCATTATCCTCACCTGGGTTGAACTGACGTACCTCGGCGTTGATTCCTACTTTTTCC TCGCGCTTTTCAATCTCAACTTCATTCTGCTGCTGCTGGTGCTGTTCATAGTGGTGCGCAACGGCGTCAAGCTGATACTG GAACGCCGCCGCAGAGTGCTGGGGTCGCGGCTGCGCACACGGCTGGTGCTGGCCTTCATGTCGCTTTCTCTTTTTCCCAC CGTGCTCATGTTTGTGGTCAGTGCGCGCTTTGTGCAGACGTCCGTGGACTACTGGTTCAAAAGTCAGGTGGAAACGTCCA TGGAAATGGCGCTGGACGTGGGGCAGACACTATACAGCACAACCCGTGACAGGCTGAACCAGCGCGGCGATTTCATCGTA AAGGAAATCATCGAACGCCGGTTTGCCTGGGGCGGAAAAAGCATGGATGCCTATCTCCAGAAAAAACAGCAGGAGTACAA TCTGCTGCTGGTGGGTGTGCTGCGCACCGACAGAAGCGAGCAGAACTGGCACGGCGATGCCAGCGCAGCCGCACTGTGGG CCGAAACCAAAGCCCGCATAGACTGGGACAGTCTGGAAGCGCAGCCCCGTTACTGGTCACTGCTGTGGCCCGGGCAGGAG GCGGACTATGCCGTGGGAGTGCTGCCGGTGGACGACGGCAGAACAGGGTATCTGGTGCTGGTCGAAAACATCGGTCAGGG CCTCATGTACAAGCTCGACAGAGTGGTGCGCGGTTTTGACGAATACAAAAAACTCAAGACGCTGAAACATCCGCTCAAAG TCACACTGTATTTCATTCTCGGGGTGCTTACCCTGCTGATCATTCTCGGGGCCATGTGGTTCGGGTTCAGGCTGTCAAAG GAACTGACGGCCCCCATCATGGCGCTGGCGGAAGGCACGGAGCGCATTGCCCGCGGCGACCTGACTGTACGGCTGGAAGA CAGCTCGACAGATGAACTGGGTGTGCTGGTGCAGTCGTTCAACCGCATGACGGAAGACCTGGAAATGAGCCGCAGCCGCC TGACGGATGCCAACCTGATGCTGGCGGCGCAGAACGAAGAAAAAGAACAGCGCACACGGTACATCGAGGCCGTACTGGAC AACATCGCCGCCGGCGTGGTTTCGCTGGACGCCGAAGGCCGCATCAGCACCATGAACAAAGCGGCGGGAGCCATGTTTTC CATCGATCCGCGCCCGCTTCTCGGCTCGCGCCCGGGGGACCTGCTTTCCGGAGAACACTCCCGCATGTTCCGCGAAATGG TGCGGCAGTTCAAGGCTTCTCCCGAATCGCAGTGGCAGCGCCAGATGACGCTGCGCGCAGGCGACTATGAATGGAAGCTG CTGGTGAACGCTGTGGGGCTGCCCACGCCGCAGGGCGACTACAACGGGCTGGTGGCCGTGTTTGAAGACATCACCGAACT GGAAAAAATGCAGCGCATGGCGGCATGGCGCGAAGTGGCGCGGCGCATAGCCCACGAGATCAAAAATCCGCTCACCCCCA TCAAGCTTTCGGCTCAGCGGCTGCAGCGCAAGTTCGGACCGGACATTGAAGACCCTATTTTTCCGCAGTGCACAGAACTC ATCGTGCGGCAGGTGGAGCAGTTGCAGCAGATGGTGCAGGAATTTTCGGCCTTTGCCAAACTGCCCGAGGTCAAACCTCT GCCCGGCGACATCATGCCGCTGCTCAGCGAGCTGGTGACCATGTTCCGCACCAGCCACAGCGGCATAACGTGGGAAATGC ACGCCCCGCAATCGCTGCCGCGCATGAATCTGGATAAAAAAGCCATGCACCGGGCGCTGCTTAACATCATGACCAACGCG GCCGAAGTGCTGGAGGGCCGCGAGTCGCCCGCAGTCACCGTAACCGTGCGGCATGACAAGGCGCTGGGCCTTGTGCGGGT GGACGTGGCCGACAACGGTCCCGGTCTGAGCGCGGAAGAACGCTCGCGCCTGTTTGAACCCTACTTTTCCCGCAAGCGCG GTGGTACCGGACTGGGGCTGACCATCGTCAAATCCATAGTACAGGACCACAGAGGCTATGTGCGTGCAAATGCCGCCCCC GACGGCGGAACCATTGTCACAATGGAGCTGCCTGTGACATAA
Upstream 100 bases:
>100_bases TGTACCGCCCTGGCTTTCCAAAACGCTTTTTTTCTGGTCGTGGGATGTCGCCCCGCCCATCAGCTATTCGATGACTTTCA CCTTCTAGACCACGCCCGCC
Downstream 100 bases:
>100_bases TGCGGTTCCGTCATCATCCATCATAACCGGGAGCCACACATGAACGCAGTGATACTGGGCGGAACAGGATTTATAGGTAC GGCACTGGCCCGAAGCATGA
Product: multi-sensor signal transduction histidine kinase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 733; Mature: 732
Protein sequence:
>733_residues MTDEQSTIRVSVADTRERKRRQRELLLAAVAFLAVIILTWVELTYLGVDSYFFLALFNLNFILLLLVLFIVVRNGVKLIL ERRRRVLGSRLRTRLVLAFMSLSLFPTVLMFVVSARFVQTSVDYWFKSQVETSMEMALDVGQTLYSTTRDRLNQRGDFIV KEIIERRFAWGGKSMDAYLQKKQQEYNLLLVGVLRTDRSEQNWHGDASAAALWAETKARIDWDSLEAQPRYWSLLWPGQE ADYAVGVLPVDDGRTGYLVLVENIGQGLMYKLDRVVRGFDEYKKLKTLKHPLKVTLYFILGVLTLLIILGAMWFGFRLSK ELTAPIMALAEGTERIARGDLTVRLEDSSTDELGVLVQSFNRMTEDLEMSRSRLTDANLMLAAQNEEKEQRTRYIEAVLD NIAAGVVSLDAEGRISTMNKAAGAMFSIDPRPLLGSRPGDLLSGEHSRMFREMVRQFKASPESQWQRQMTLRAGDYEWKL LVNAVGLPTPQGDYNGLVAVFEDITELEKMQRMAAWREVARRIAHEIKNPLTPIKLSAQRLQRKFGPDIEDPIFPQCTEL IVRQVEQLQQMVQEFSAFAKLPEVKPLPGDIMPLLSELVTMFRTSHSGITWEMHAPQSLPRMNLDKKAMHRALLNIMTNA AEVLEGRESPAVTVTVRHDKALGLVRVDVADNGPGLSAEERSRLFEPYFSRKRGGTGLGLTIVKSIVQDHRGYVRANAAP DGGTIVTMELPVT
Sequences:
>Translated_733_residues MTDEQSTIRVSVADTRERKRRQRELLLAAVAFLAVIILTWVELTYLGVDSYFFLALFNLNFILLLLVLFIVVRNGVKLIL ERRRRVLGSRLRTRLVLAFMSLSLFPTVLMFVVSARFVQTSVDYWFKSQVETSMEMALDVGQTLYSTTRDRLNQRGDFIV KEIIERRFAWGGKSMDAYLQKKQQEYNLLLVGVLRTDRSEQNWHGDASAAALWAETKARIDWDSLEAQPRYWSLLWPGQE ADYAVGVLPVDDGRTGYLVLVENIGQGLMYKLDRVVRGFDEYKKLKTLKHPLKVTLYFILGVLTLLIILGAMWFGFRLSK ELTAPIMALAEGTERIARGDLTVRLEDSSTDELGVLVQSFNRMTEDLEMSRSRLTDANLMLAAQNEEKEQRTRYIEAVLD NIAAGVVSLDAEGRISTMNKAAGAMFSIDPRPLLGSRPGDLLSGEHSRMFREMVRQFKASPESQWQRQMTLRAGDYEWKL LVNAVGLPTPQGDYNGLVAVFEDITELEKMQRMAAWREVARRIAHEIKNPLTPIKLSAQRLQRKFGPDIEDPIFPQCTEL IVRQVEQLQQMVQEFSAFAKLPEVKPLPGDIMPLLSELVTMFRTSHSGITWEMHAPQSLPRMNLDKKAMHRALLNIMTNA AEVLEGRESPAVTVTVRHDKALGLVRVDVADNGPGLSAEERSRLFEPYFSRKRGGTGLGLTIVKSIVQDHRGYVRANAAP DGGTIVTMELPVT >Mature_732_residues TDEQSTIRVSVADTRERKRRQRELLLAAVAFLAVIILTWVELTYLGVDSYFFLALFNLNFILLLLVLFIVVRNGVKLILE RRRRVLGSRLRTRLVLAFMSLSLFPTVLMFVVSARFVQTSVDYWFKSQVETSMEMALDVGQTLYSTTRDRLNQRGDFIVK EIIERRFAWGGKSMDAYLQKKQQEYNLLLVGVLRTDRSEQNWHGDASAAALWAETKARIDWDSLEAQPRYWSLLWPGQEA DYAVGVLPVDDGRTGYLVLVENIGQGLMYKLDRVVRGFDEYKKLKTLKHPLKVTLYFILGVLTLLIILGAMWFGFRLSKE LTAPIMALAEGTERIARGDLTVRLEDSSTDELGVLVQSFNRMTEDLEMSRSRLTDANLMLAAQNEEKEQRTRYIEAVLDN IAAGVVSLDAEGRISTMNKAAGAMFSIDPRPLLGSRPGDLLSGEHSRMFREMVRQFKASPESQWQRQMTLRAGDYEWKLL VNAVGLPTPQGDYNGLVAVFEDITELEKMQRMAAWREVARRIAHEIKNPLTPIKLSAQRLQRKFGPDIEDPIFPQCTELI VRQVEQLQQMVQEFSAFAKLPEVKPLPGDIMPLLSELVTMFRTSHSGITWEMHAPQSLPRMNLDKKAMHRALLNIMTNAA EVLEGRESPAVTVTVRHDKALGLVRVDVADNGPGLSAEERSRLFEPYFSRKRGGTGLGLTIVKSIVQDHRGYVRANAAPD GGTIVTMELPVT
Specific function: Member of the two-component regulatory system ntrY/ntrX involved in nitrogen level control. Probably activates ntrX by phosphorylation [H]
COG id: COG5000
COG function: function code T; Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 PAS (PER-ARNT-SIM) domain [H]
Homologues:
Organism=Escherichia coli, GI1788549, Length=425, Percent_Identity=22.8235294117647, Blast_Score=124, Evalue=2e-29, Organism=Escherichia coli, GI1790300, Length=235, Percent_Identity=30.6382978723404, Blast_Score=94, Evalue=3e-20, Organism=Escherichia coli, GI1790436, Length=231, Percent_Identity=27.7056277056277, Blast_Score=92, Evalue=1e-19, Organism=Escherichia coli, GI1790346, Length=240, Percent_Identity=28.75, Blast_Score=87, Evalue=5e-18, Organism=Escherichia coli, GI1788393, Length=276, Percent_Identity=27.8985507246377, Blast_Score=84, Evalue=3e-17, Organism=Escherichia coli, GI1789808, Length=218, Percent_Identity=25.6880733944954, Blast_Score=75, Evalue=2e-14,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003594 - InterPro: IPR003660 - InterPro: IPR000014 - InterPro: IPR013767 - InterPro: IPR004358 - InterPro: IPR003661 - InterPro: IPR005467 - InterPro: IPR009082 - InterPro: IPR017232 [H]
Pfam domain/function: PF00672 HAMP; PF02518 HATPase_c; PF00512 HisKA; PF00989 PAS [H]
EC number: =2.7.13.3 [H]
Molecular weight: Translated: 83103; Mature: 82971
Theoretical pI: Translated: 9.15; Mature: 9.15
Prosite motif: PS50885 HAMP ; PS50112 PAS ; PS50109 HIS_KIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.1 %Cys (Translated Protein) 3.7 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 0.1 %Cys (Mature Protein) 3.6 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTDEQSTIRVSVADTRERKRRQRELLLAAVAFLAVIILTWVELTYLGVDSYFFLALFNLN CCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH FILLLLVLFIVVRNGVKLILERRRRVLGSRLRTRLVLAFMSLSLFPTVLMFVVSARFVQT HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH SVDYWFKSQVETSMEMALDVGQTLYSTTRDRLNQRGDFIVKEIIERRFAWGGKSMDAYLQ HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCHHHHHH KKQQEYNLLLVGVLRTDRSEQNWHGDASAAALWAETKARIDWDSLEAQPRYWSLLWPGQE HHHHCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHCCCCHHHCCCCCCEEEEECCCCC ADYAVGVLPVDDGRTGYLVLVENIGQGLMYKLDRVVRGFDEYKKLKTLKHPLKVTLYFIL CCCEEEEEECCCCCCEEEEEEHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH GVLTLLIILGAMWFGFRLSKELTAPIMALAEGTERIARGDLTVRLEDSSTDELGVLVQSF HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHH NRMTEDLEMSRSRLTDANLMLAAQNEEKEQRTRYIEAVLDNIAAGVVSLDAEGRISTMNK HHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHEEECCCCCHHHHHH AAGAMFSIDPRPLLGSRPGDLLSGEHSRMFREMVRQFKASPESQWQRQMTLRAGDYEWKL HCCCEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCEEEE LVNAVGLPTPQGDYNGLVAVFEDITELEKMQRMAAWREVARRIAHEIKNPLTPIKLSAQR EEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH LQRKFGPDIEDPIFPQCTELIVRQVEQLQQMVQEFSAFAKLPEVKPLPGDIMPLLSELVT HHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHH MFRTSHSGITWEMHAPQSLPRMNLDKKAMHRALLNIMTNAAEVLEGRESPAVTVTVRHDK HHHCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCC ALGLVRVDVADNGPGLSAEERSRLFEPYFSRKRGGTGLGLTIVKSIVQDHRGYVRANAAP CEEEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCEEEECCCC DGGTIVTMELPVT CCCEEEEEEECCC >Mature Secondary Structure TDEQSTIRVSVADTRERKRRQRELLLAAVAFLAVIILTWVELTYLGVDSYFFLALFNLN CCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH FILLLLVLFIVVRNGVKLILERRRRVLGSRLRTRLVLAFMSLSLFPTVLMFVVSARFVQT HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH SVDYWFKSQVETSMEMALDVGQTLYSTTRDRLNQRGDFIVKEIIERRFAWGGKSMDAYLQ HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCHHHHHH KKQQEYNLLLVGVLRTDRSEQNWHGDASAAALWAETKARIDWDSLEAQPRYWSLLWPGQE HHHHCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHCCCCHHHCCCCCCEEEEECCCCC ADYAVGVLPVDDGRTGYLVLVENIGQGLMYKLDRVVRGFDEYKKLKTLKHPLKVTLYFIL CCCEEEEEECCCCCCEEEEEEHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH GVLTLLIILGAMWFGFRLSKELTAPIMALAEGTERIARGDLTVRLEDSSTDELGVLVQSF HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHH NRMTEDLEMSRSRLTDANLMLAAQNEEKEQRTRYIEAVLDNIAAGVVSLDAEGRISTMNK HHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHEEECCCCCHHHHHH AAGAMFSIDPRPLLGSRPGDLLSGEHSRMFREMVRQFKASPESQWQRQMTLRAGDYEWKL HCCCEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCEEEE LVNAVGLPTPQGDYNGLVAVFEDITELEKMQRMAAWREVARRIAHEIKNPLTPIKLSAQR EEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH LQRKFGPDIEDPIFPQCTELIVRQVEQLQQMVQEFSAFAKLPEVKPLPGDIMPLLSELVT HHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHH MFRTSHSGITWEMHAPQSLPRMNLDKKAMHRALLNIMTNAAEVLEGRESPAVTVTVRHDK HHHCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCC ALGLVRVDVADNGPGLSAEERSRLFEPYFSRKRGGTGLGLTIVKSIVQDHRGYVRANAAP CEEEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCEEEECCCC DGGTIVTMELPVT CCCEEEEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 1661370 [H]