Click here to switch to the map view.

The map label for this gene is insF1 [C]

Identifier: 78358028

GI number: 78358028

Start: 2968130

End: 2968966

Strand: Direct

Name: insF1 [C]

Synonym: Dde_2988

Alternate gene names: 78358028

Gene position: 2968130-2968966 (Clockwise)

Preceding gene: 78358027

Following gene: 78358029

Centisome position: 79.57

GC content: 48.51

Gene sequence:

>837_bases
TTGGCGGCTTGTTGCAGGCAGCTCGGGGTGAGCCGCCAATCTGTTTATCAGGCCGAAAAGCGTTTTGAATTCCGAGCTAT
CCAGCTTCAAGTTGTGAAAGAGCTGGTGCTTGCCGTCAGAGCCAGAATGCCTCGGCTTGGAACCAGAAAGCTGTATTCGC
TGCTGTGCGATGCTATCAGCGCAAAGGGAATCAAGCTTGGGCGCGATGCTTTGTTCGCGTTGTTACGAAAGGAGCACATG
CTCATAAGGCACAAACGAAACTACACAAAAACAACAAATTCAAAGCATTGGCTCAAGAAGCACCCGAACTTGTTTAAAGA
TATCCGACCATCAAGTCCGGAGCAGGTTTTTGTTAGTGACATCACATATCTTTCGACAAGAGAGCAGACCTACTACCTCA
CCTTGGTGACGGATGCTTATAGTAGAAAGATCATGGGACATAGCCTCAATCGGGATCTTGGAGCTGAAGGGGTGTCCAAG
GCACTGGAAAAAGCTGCCAGGAACCGTTTGACTACCAAAGAGGCAATCCACCACTCTGACAGGGGGCTTCAGTACGCATC
GACCATCTACCAAGACAAGTTGAGTAAGGCAGGGATGCTTTGTTCCATGACTGATGGATACGATTGCTATCAGAACGCTT
TGGCTGAACGGGTGAATGGCATCCTGAAGCAAGAGTTTCTATTTGTGCCATGCAAAAGTTACGATGAGTTGAAGGCAGTT
GTGGACGAGTCGATCGGAATCTATAATACGGAGCGTCCTCATCTTAGCCTGAATATGAAGACGCCGGAGTATGTACATAA
AATGGGCTGTGAGGTTGCCCTCACAGCCCAAACTTGA

Upstream 100 bases:

>100_bases
ACGAAATGATTGACATTTCAGACCGCGAATACGGGACTGCCATAAGAAAAAAGTTTACCCCCGAGCTGCACGAAATCTTC
AACAAAAAGCCAAAGTAAGC

Downstream 100 bases:

>100_bases
ACAATCTAAAAAACGTCAACTCATTTTAGGACGGGTCACCGGAACCTGCCACCATAAAAAAGTGAACAAAAACAGCCTCA
ATACATCAAAAAACAAAAAA

Product: ISPsy11, transposase OrfB

Products: NA

Alternate protein names: ISO-S3 31 kDa protein [H]

Number of amino acids: Translated: 278; Mature: 277

Protein sequence:

>278_residues
MAACCRQLGVSRQSVYQAEKRFEFRAIQLQVVKELVLAVRARMPRLGTRKLYSLLCDAISAKGIKLGRDALFALLRKEHM
LIRHKRNYTKTTNSKHWLKKHPNLFKDIRPSSPEQVFVSDITYLSTREQTYYLTLVTDAYSRKIMGHSLNRDLGAEGVSK
ALEKAARNRLTTKEAIHHSDRGLQYASTIYQDKLSKAGMLCSMTDGYDCYQNALAERVNGILKQEFLFVPCKSYDELKAV
VDESIGIYNTERPHLSLNMKTPEYVHKMGCEVALTAQT

Sequences:

>Translated_278_residues
MAACCRQLGVSRQSVYQAEKRFEFRAIQLQVVKELVLAVRARMPRLGTRKLYSLLCDAISAKGIKLGRDALFALLRKEHM
LIRHKRNYTKTTNSKHWLKKHPNLFKDIRPSSPEQVFVSDITYLSTREQTYYLTLVTDAYSRKIMGHSLNRDLGAEGVSK
ALEKAARNRLTTKEAIHHSDRGLQYASTIYQDKLSKAGMLCSMTDGYDCYQNALAERVNGILKQEFLFVPCKSYDELKAV
VDESIGIYNTERPHLSLNMKTPEYVHKMGCEVALTAQT
>Mature_277_residues
AACCRQLGVSRQSVYQAEKRFEFRAIQLQVVKELVLAVRARMPRLGTRKLYSLLCDAISAKGIKLGRDALFALLRKEHML
IRHKRNYTKTTNSKHWLKKHPNLFKDIRPSSPEQVFVSDITYLSTREQTYYLTLVTDAYSRKIMGHSLNRDLGAEGVSKA
LEKAARNRLTTKEAIHHSDRGLQYASTIYQDKLSKAGMLCSMTDGYDCYQNALAERVNGILKQEFLFVPCKSYDELKAVV
DESIGIYNTERPHLSLNMKTPEYVHKMGCEVALTAQT

Specific function: Involved in the transposition of the insertion sequence is3 [C]

COG id: COG2801

COG function: function code L; Transposase and inactivated derivatives

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 integrase catalytic domain [H]

Homologues:

Organism=Homo sapiens, GI310129419, Length=184, Percent_Identity=33.1521739130435, Blast_Score=97, Evalue=2e-20,
Organism=Escherichia coli, GI1788405, Length=273, Percent_Identity=31.1355311355311, Blast_Score=97, Evalue=9e-22,
Organism=Escherichia coli, GI1787263, Length=273, Percent_Identity=31.1355311355311, Blast_Score=97, Evalue=9e-22,
Organism=Escherichia coli, GI1786753, Length=273, Percent_Identity=31.1355311355311, Blast_Score=97, Evalue=9e-22,
Organism=Escherichia coli, GI1786570, Length=273, Percent_Identity=31.1355311355311, Blast_Score=97, Evalue=9e-22,
Organism=Escherichia coli, GI1786490, Length=273, Percent_Identity=31.1355311355311, Blast_Score=97, Evalue=9e-22,
Organism=Escherichia coli, GI1789981, Length=163, Percent_Identity=30.6748466257669, Blast_Score=77, Evalue=1e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001584
- InterPro:   IPR012337 [H]

Pfam domain/function: PF00665 rve [H]

EC number: NA

Molecular weight: Translated: 31759; Mature: 31628

Theoretical pI: Translated: 9.92; Mature: 9.92

Prosite motif: PS50994 INTEGRASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.5 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
2.5 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAACCRQLGVSRQSVYQAEKRFEFRAIQLQVVKELVLAVRARMPRLGTRKLYSLLCDAIS
CCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
AKGIKLGRDALFALLRKEHMLIRHKRNYTKTTNSKHWLKKHPNLFKDIRPSSPEQVFVSD
CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHCCCHHHHCCCCCCCEEHHHH
ITYLSTREQTYYLTLVTDAYSRKIMGHSLNRDLGAEGVSKALEKAARNRLTTKEAIHHSD
HHHHCCCCCEEEEEEEECHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHCC
RGLQYASTIYQDKLSKAGMLCSMTDGYDCYQNALAERVNGILKQEFLFVPCKSYDELKAV
CCHHHHHHHHHHHHHHCCCEEECCCCHHHHHHHHHHHHHHHHHHHEEEECCCCHHHHHHH
VDESIGIYNTERPHLSLNMKTPEYVHKMGCEVALTAQT
HHHCCCCCCCCCCCEEEECCCHHHHHHCCCCEEEEECC
>Mature Secondary Structure 
AACCRQLGVSRQSVYQAEKRFEFRAIQLQVVKELVLAVRARMPRLGTRKLYSLLCDAIS
CHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
AKGIKLGRDALFALLRKEHMLIRHKRNYTKTTNSKHWLKKHPNLFKDIRPSSPEQVFVSD
CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHCCCHHHHCCCCCCCEEHHHH
ITYLSTREQTYYLTLVTDAYSRKIMGHSLNRDLGAEGVSKALEKAARNRLTTKEAIHHSD
HHHHCCCCCEEEEEEEECHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHCC
RGLQYASTIYQDKLSKAGMLCSMTDGYDCYQNALAERVNGILKQEFLFVPCKSYDELKAV
CCHHHHHHHHHHHHHHCCCEEECCCCHHHHHHHHHHHHHHHHHHHEEEECCCCHHHHHHH
VDESIGIYNTERPHLSLNMKTPEYVHKMGCEVALTAQT
HHHCCCCCCCCCCCEEEECCCHHHHHHCCCCEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2824781 [H]