| Definition | Desulfovibrio desulfuricans subsp. desulfuricans str. G20 chromosome, complete genome. |
|---|---|
| Accession | NC_007519 |
| Length | 3,730,232 |
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The map label for this gene is kinE [H]
Identifier: 78357990
GI number: 78357990
Start: 2928725
End: 2930857
Strand: Direct
Name: kinE [H]
Synonym: Dde_2950
Alternate gene names: 78357990
Gene position: 2928725-2930857 (Clockwise)
Preceding gene: 78357989
Following gene: 78357991
Centisome position: 78.51
GC content: 58.56
Gene sequence:
>2133_bases ATGCGTGTTTTTTCTGCCCTCATGCGCCGCTCATGCGCCTTTTTTCTGATGCTTGCACTATGCCTGTGCCTGCAGACAGC AGGGCACGCGCATGGGCAGACACTGGAATTCCGGTGTGATGACAGCCTGCCGCCCTACGAGTTTCTGGCCTACGGCAGGG CGCAGGGCTTCACCGTGGACCTGGTGCAGGCCATCGCCCGCGACAGCGGGCTGCATGTGCAGATCATCCCCGGACCGTGG CATGTCATCAAGGCGGAACTGGACGCCGGCAACACCGACGCGCTGACCGGCATGTACTATACGCGCGAAAGAGCGCGGCA GGTTCTGTTTTCAGAACCCTATACCGTGGTCTCGCATTCCATTTTCGTGCGCAAAGGCTCCCGCGCCATGACGGCAGAAG ACCTGAAAGGCGCCGTGGTGGCGGTGCAGCGCAACGACATCATGCATGAATACGCGCAGAAGCACCTGACCGGCAGCACC CTGCTGCCCTGTACCACCCGTCTGGAGGCTCTGCAGGCCGTTTCGGACGGACGGGCAGAAGCAGCGCTGCTCGGCAGGCT CATGGCCCTGCAGCTTATGTATGAACACAACATCACCAACGTCACCGTATCAGGAGAAGCACTGCTCACCACCCCGCTGT GTTTCGGTTTTGCACCGGACAGAAAAGACATCATGGTCATTTTCAATGAAGGGCTGGCCCATCTCAGAATGACCGGTGAA TTTGACGTCATCTACGAAAAATGGTTCGGCCGGCTGGAACGCAGGGCTGCAGAAGAAGTGGTGCGCCGTTACGCGGCATG GGTGCTCACCCCGCTTTTTTTCATCATGGCCGCGGGACTCTGCTGGCTGGTTATTCTGAAAAAACGGCTTGCCCGCCGTA CACTGCAGCTGCAGGTACAGGTGGAAAAGCTGCAGGAAACCGAAAAAGCCCTTGCCGAAAGCGAGCGGCAGTACCGGTCC ATTTTCGAAACCATCCGCGACGGATTCTACAGGGCCGACATGCAGGGGCGCGTTGTATTATGCAACCCTGCGGCGGCCGA CATGCTGGGTTATTCCATGGAGGAACTGGCAGGAAAAAACATAGCACAGGACCTGTACAGACACCCCTATGAACGCCGGA AACTGCTCAGCCATCTGGAACGCGAAGAAGCAGCGGCCAATGTTCAGGTTGAAATGCTCCACAAAAACGGCAGCATTGTG CTTATAGAAACCAATTCACGGCTCGTGCGCGATGAAACAACAGGGGAACCCGTGGCCGTGGAAGGCGTCATACGCGATGT GACAGCGCGTAACAGACTGGAAGCGCTTATAGCCAGAACGGAAAAAATGATATCGCTGGGGGGGCTGGCTTCCGGCATGG CACATGAAATCAACAATCCGCTGGGCGCCATCCTGCAGGGGGTCCAGAACATAAGCCGCAGGCTCGACTCCCGCCTTGCC GCAAACATACAGGCTGCGGCAGACAGCGGTATCAGCACGGAAGGGCTGGAAGACTATATCCGCAGACGCAATATACGCAA ATTGCTGCACAGCGTGCGCAGCGCAGGTGAACAGGCGGCGGGCATAGTGCGCAGCATGCTCAGCTTCAGCCAGACAGGAA CTCCTGTCCTCATGCCCAGCGACATCAATGCACTGACGGAACGTGTCATCACGCTGGTGCGCAGCGAATGCCGTCTGTCC GAGCAGCTGTGTTTCAGCGACATAGCGCTGCACGTCGAGCTGGCATCAGGACTGCCGCCCGTGCCCTGCAGTCCGGCAGA AATAGAACAGGTGCTGCTGCATCTGCTGCGCAACGCCGCTCAGGCGCTTGCCCACGGAAAAACAACAGCCCCGCGCATAA CCATACGCACGGCACTTGATGCCCGCCATATACGCATAGAGGTGGAAGACAACGGCCCCGGAGTGGATGAAGATACCGCA CGGCGCATATTCGATCCATTTTTCACCACCAGAGAAGTGGGACAGGGCACCGGACTCGGACTTTCCGTCGCGTACTTCAT CGTTACCCAGAACCATAACGGCAGCATTTATCATGAACCGGCAGAATCCGGCGGCGTGCGTTTCGTCATCCGCCTGCCGC TTTTCCCCGGTGCCCCCTCCGGACAGGATGCCCGGCCCTCCTCCGCCCTTTGA
Upstream 100 bases:
>100_bases CGGGCTTGCCTTTACCCCCGCGCTGTAAGAAACTATCCGACAGCCGGTTCCCCCACGGTATCCGGCAGAGTCTTGGCAAC CGGTACAGACGGAAATCAGC
Downstream 100 bases:
>100_bases CCTGCCCTGCGAAAAACCGCATAGTGCCGCTGAATGCACACAGAAAATCAATCCACTGCGTGTTCCGTCCGCTTTGAAGT GCCGGAACCAACGGCAACCC
Product: PAS/PAC sensor signal transduction histidine kinase
Products: NA
Alternate protein names: Sensor histidine kinase E [H]
Number of amino acids: Translated: 710; Mature: 710
Protein sequence:
>710_residues MRVFSALMRRSCAFFLMLALCLCLQTAGHAHGQTLEFRCDDSLPPYEFLAYGRAQGFTVDLVQAIARDSGLHVQIIPGPW HVIKAELDAGNTDALTGMYYTRERARQVLFSEPYTVVSHSIFVRKGSRAMTAEDLKGAVVAVQRNDIMHEYAQKHLTGST LLPCTTRLEALQAVSDGRAEAALLGRLMALQLMYEHNITNVTVSGEALLTTPLCFGFAPDRKDIMVIFNEGLAHLRMTGE FDVIYEKWFGRLERRAAEEVVRRYAAWVLTPLFFIMAAGLCWLVILKKRLARRTLQLQVQVEKLQETEKALAESERQYRS IFETIRDGFYRADMQGRVVLCNPAAADMLGYSMEELAGKNIAQDLYRHPYERRKLLSHLEREEAAANVQVEMLHKNGSIV LIETNSRLVRDETTGEPVAVEGVIRDVTARNRLEALIARTEKMISLGGLASGMAHEINNPLGAILQGVQNISRRLDSRLA ANIQAAADSGISTEGLEDYIRRRNIRKLLHSVRSAGEQAAGIVRSMLSFSQTGTPVLMPSDINALTERVITLVRSECRLS EQLCFSDIALHVELASGLPPVPCSPAEIEQVLLHLLRNAAQALAHGKTTAPRITIRTALDARHIRIEVEDNGPGVDEDTA RRIFDPFFTTREVGQGTGLGLSVAYFIVTQNHNGSIYHEPAESGGVRFVIRLPLFPGAPSGQDARPSSAL
Sequences:
>Translated_710_residues MRVFSALMRRSCAFFLMLALCLCLQTAGHAHGQTLEFRCDDSLPPYEFLAYGRAQGFTVDLVQAIARDSGLHVQIIPGPW HVIKAELDAGNTDALTGMYYTRERARQVLFSEPYTVVSHSIFVRKGSRAMTAEDLKGAVVAVQRNDIMHEYAQKHLTGST LLPCTTRLEALQAVSDGRAEAALLGRLMALQLMYEHNITNVTVSGEALLTTPLCFGFAPDRKDIMVIFNEGLAHLRMTGE FDVIYEKWFGRLERRAAEEVVRRYAAWVLTPLFFIMAAGLCWLVILKKRLARRTLQLQVQVEKLQETEKALAESERQYRS IFETIRDGFYRADMQGRVVLCNPAAADMLGYSMEELAGKNIAQDLYRHPYERRKLLSHLEREEAAANVQVEMLHKNGSIV LIETNSRLVRDETTGEPVAVEGVIRDVTARNRLEALIARTEKMISLGGLASGMAHEINNPLGAILQGVQNISRRLDSRLA ANIQAAADSGISTEGLEDYIRRRNIRKLLHSVRSAGEQAAGIVRSMLSFSQTGTPVLMPSDINALTERVITLVRSECRLS EQLCFSDIALHVELASGLPPVPCSPAEIEQVLLHLLRNAAQALAHGKTTAPRITIRTALDARHIRIEVEDNGPGVDEDTA RRIFDPFFTTREVGQGTGLGLSVAYFIVTQNHNGSIYHEPAESGGVRFVIRLPLFPGAPSGQDARPSSAL >Mature_710_residues MRVFSALMRRSCAFFLMLALCLCLQTAGHAHGQTLEFRCDDSLPPYEFLAYGRAQGFTVDLVQAIARDSGLHVQIIPGPW HVIKAELDAGNTDALTGMYYTRERARQVLFSEPYTVVSHSIFVRKGSRAMTAEDLKGAVVAVQRNDIMHEYAQKHLTGST LLPCTTRLEALQAVSDGRAEAALLGRLMALQLMYEHNITNVTVSGEALLTTPLCFGFAPDRKDIMVIFNEGLAHLRMTGE FDVIYEKWFGRLERRAAEEVVRRYAAWVLTPLFFIMAAGLCWLVILKKRLARRTLQLQVQVEKLQETEKALAESERQYRS IFETIRDGFYRADMQGRVVLCNPAAADMLGYSMEELAGKNIAQDLYRHPYERRKLLSHLEREEAAANVQVEMLHKNGSIV LIETNSRLVRDETTGEPVAVEGVIRDVTARNRLEALIARTEKMISLGGLASGMAHEINNPLGAILQGVQNISRRLDSRLA ANIQAAADSGISTEGLEDYIRRRNIRKLLHSVRSAGEQAAGIVRSMLSFSQTGTPVLMPSDINALTERVITLVRSECRLS EQLCFSDIALHVELASGLPPVPCSPAEIEQVLLHLLRNAAQALAHGKTTAPRITIRTALDARHIRIEVEDNGPGVDEDTA RRIFDPFFTTREVGQGTGLGLSVAYFIVTQNHNGSIYHEPAESGGVRFVIRLPLFPGAPSGQDARPSSAL
Specific function: Phosphorylates the sporulation-regulatory protein spo0A under biofilm growth conditions. Also able to weakly phosphorylate spo0F [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Integral Membrane Protein. Inner Membrane [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 4 PAS (PER-ARNT-SIM) domains [H]
Homologues:
Organism=Escherichia coli, GI1788549, Length=419, Percent_Identity=29.1169451073986, Blast_Score=134, Evalue=2e-32, Organism=Escherichia coli, GI1790436, Length=271, Percent_Identity=29.1512915129151, Blast_Score=98, Evalue=2e-21, Organism=Escherichia coli, GI1788228, Length=221, Percent_Identity=28.5067873303167, Blast_Score=94, Evalue=3e-20, Organism=Escherichia coli, GI1787031, Length=236, Percent_Identity=27.1186440677966, Blast_Score=81, Evalue=2e-16, Organism=Escherichia coli, GI1790300, Length=362, Percent_Identity=27.6243093922652, Blast_Score=80, Evalue=5e-16, Organism=Escherichia coli, GI1790346, Length=262, Percent_Identity=27.4809160305344, Blast_Score=75, Evalue=1e-14,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003594 - InterPro: IPR000014 - InterPro: IPR013767 - InterPro: IPR004358 - InterPro: IPR003661 - InterPro: IPR005467 - InterPro: IPR009082 [H]
Pfam domain/function: PF02518 HATPase_c; PF00512 HisKA; PF00989 PAS [H]
EC number: =2.7.13.3 [H]
Molecular weight: Translated: 78723; Mature: 78723
Theoretical pI: Translated: 7.31; Mature: 7.31
Prosite motif: PS50112 PAS ; PS50113 PAC ; PS50109 HIS_KIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 4.2 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 4.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRVFSALMRRSCAFFLMLALCLCLQTAGHAHGQTLEFRCDDSLPPYEFLAYGRAQGFTVD CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHCCCCCCHHH LVQAIARDSGLHVQIIPGPWHVIKAELDAGNTDALTGMYYTRERARQVLFSEPYTVVSHS HHHHHHCCCCCEEEEECCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHH IFVRKGSRAMTAEDLKGAVVAVQRNDIMHEYAQKHLTGSTLLPCTTRLEALQAVSDGRAE HEEECCCCCCCHHHCCCEEEEEEHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCHH AALLGRLMALQLMYEHNITNVTVSGEALLTTPLCFGFAPDRKDIMVIFNEGLAHLRMTGE HHHHHHHHHHHHHHHCCCCEEEECCCCCEECHHHHCCCCCCCCEEEEEECCCEEEEECCC FDVIYEKWFGRLERRAAEEVVRRYAAWVLTPLFFIMAAGLCWLVILKKRLARRTLQLQVQ HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VEKLQETEKALAESERQYRSIFETIRDGFYRADMQGRVVLCNPAAADMLGYSMEELAGKN HHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCEEEECCHHHHHHCCCHHHHCCCH IAQDLYRHPYERRKLLSHLEREEAAANVQVEMLHKNGSIVLIETNSRLVRDETTGEPVAV HHHHHHHCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCEEEEECCCEEEECCCCCCCEEH EGVIRDVTARNRLEALIARTEKMISLGGLASGMAHEINNPLGAILQGVQNISRRLDSRLA HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH ANIQAAADSGISTEGLEDYIRRRNIRKLLHSVRSAGEQAAGIVRSMLSFSQTGTPVLMPS HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCEECCC DINALTERVITLVRSECRLSEQLCFSDIALHVELASGLPPVPCSPAEIEQVLLHLLRNAA CHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEHHCCCCCCCCCHHHHHHHHHHHHHHHH QALAHGKTTAPRITIRTALDARHIRIEVEDNGPGVDEDTARRIFDPFFTTREVGQGTGLG HHHHCCCCCCCEEEEEEECCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCC LSVAYFIVTQNHNGSIYHEPAESGGVRFVIRLPLFPGAPSGQDARPSSAL EEEEEEEEEECCCCCEEECCCCCCCEEEEEEECCCCCCCCCCCCCCCCCC >Mature Secondary Structure MRVFSALMRRSCAFFLMLALCLCLQTAGHAHGQTLEFRCDDSLPPYEFLAYGRAQGFTVD CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHCCCCCCHHH LVQAIARDSGLHVQIIPGPWHVIKAELDAGNTDALTGMYYTRERARQVLFSEPYTVVSHS HHHHHHCCCCCEEEEECCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHH IFVRKGSRAMTAEDLKGAVVAVQRNDIMHEYAQKHLTGSTLLPCTTRLEALQAVSDGRAE HEEECCCCCCCHHHCCCEEEEEEHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCHH AALLGRLMALQLMYEHNITNVTVSGEALLTTPLCFGFAPDRKDIMVIFNEGLAHLRMTGE HHHHHHHHHHHHHHHCCCCEEEECCCCCEECHHHHCCCCCCCCEEEEEECCCEEEEECCC FDVIYEKWFGRLERRAAEEVVRRYAAWVLTPLFFIMAAGLCWLVILKKRLARRTLQLQVQ HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VEKLQETEKALAESERQYRSIFETIRDGFYRADMQGRVVLCNPAAADMLGYSMEELAGKN HHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCEEEECCHHHHHHCCCHHHHCCCH IAQDLYRHPYERRKLLSHLEREEAAANVQVEMLHKNGSIVLIETNSRLVRDETTGEPVAV HHHHHHHCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCEEEEECCCEEEECCCCCCCEEH EGVIRDVTARNRLEALIARTEKMISLGGLASGMAHEINNPLGAILQGVQNISRRLDSRLA HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH ANIQAAADSGISTEGLEDYIRRRNIRKLLHSVRSAGEQAAGIVRSMLSFSQTGTPVLMPS HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCEECCC DINALTERVITLVRSECRLSEQLCFSDIALHVELASGLPPVPCSPAEIEQVLLHLLRNAA CHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEHHCCCCCCCCCHHHHHHHHHHHHHHHH QALAHGKTTAPRITIRTALDARHIRIEVEDNGPGVDEDTARRIFDPFFTTREVGQGTGLG HHHHCCCCCCCEEEEEEECCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCC LSVAYFIVTQNHNGSIYHEPAESGGVRFVIRLPLFPGAPSGQDARPSSAL EEEEEEEEEECCCCCEEECCCCCCCEEEEEEECCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9384377 [H]