Click here to switch to the map view.

The map label for this gene is rfbC [C]

Identifier: 78357970

GI number: 78357970

Start: 2910431

End: 2910988

Strand: Direct

Name: rfbC [C]

Synonym: Dde_2930

Alternate gene names: 78357970

Gene position: 2910431-2910988 (Clockwise)

Preceding gene: 78357968

Following gene: 78357971

Centisome position: 78.02

GC content: 59.14

Gene sequence:

>558_bases
ATGGAGTTCATCCGGACAGAATTTCCGGGGCTGACATGTATCCGTCCACGGGTTTTTCATGACAGCAGAGGCTTTTTTCT
GGAATCATTCCGGGCACGCCTTTTTGCAGAACAGGGCCTGCCGGAAGAGTTTGTACAGGACAATCATGCCTGTTCTGCAC
AGGCAGGCGTGGTGCGCGGGCTGCACATGCAGCTGCCGCCCGCGGCGCAGGGCAAACTGGTATGGGTGACGCGGGGCAGC
GTGTTTGATGTGGCGCTGGACCTGCGCACGGGATCACCCACATACGGTAAAGCCTACACAGCGGTGCTCAGTGCCGCAAA
CTTTCTGCGCCTGTTCATTCCCCGGGGCTTCGCGCACGGCTACATGACACTGGAACCCCACACCGAGTTCCAGTACAAAG
TCGATGCCTATTACGCTCCGCAGGCAGAAGCCGGAATACGCTGGGACGATCCGGACCTTGATATCCCGTGGCCGGACATG
GAAGCGGTGCTGTCTCCCAAGGATGCGGAGCTGCCCCGCCTGTGCGATTTCGCCTCCCCTTTTGTCTATGTTCCCTGA

Upstream 100 bases:

>100_bases
ACCCGACGCTTTGTTCTTCAAAAGTCTTTGCTCTTCATGTATGCAGGGGCAAGCCATGCCTCGCGGCATGCCATACTTCC
CGCCAGCATAGGAGTGGTTG

Downstream 100 bases:

>100_bases
AACACAGGAGTACAGAAGCTATGAGTGAATCAGCCCCCTCTTCCGCCATGGAACGCTGCCACGCCGTCATTCTTGCAGGC
GGTTCGGGCACGCGCCTGTG

Product: dTDP-4-dehydrorhamnose 3,5-epimerase

Products: NA

Alternate protein names: Thymidine diphospho-4-keto-rhamnose 3,5-epimerase; dTDP-4-keto-6-deoxyglucose 3,5-epimerase; dTDP-6-deoxy-D-xylo-4-hexulose 3,5-epimerase; dTDP-L-rhamnose synthase [H]

Number of amino acids: Translated: 185; Mature: 185

Protein sequence:

>185_residues
MEFIRTEFPGLTCIRPRVFHDSRGFFLESFRARLFAEQGLPEEFVQDNHACSAQAGVVRGLHMQLPPAAQGKLVWVTRGS
VFDVALDLRTGSPTYGKAYTAVLSAANFLRLFIPRGFAHGYMTLEPHTEFQYKVDAYYAPQAEAGIRWDDPDLDIPWPDM
EAVLSPKDAELPRLCDFASPFVYVP

Sequences:

>Translated_185_residues
MEFIRTEFPGLTCIRPRVFHDSRGFFLESFRARLFAEQGLPEEFVQDNHACSAQAGVVRGLHMQLPPAAQGKLVWVTRGS
VFDVALDLRTGSPTYGKAYTAVLSAANFLRLFIPRGFAHGYMTLEPHTEFQYKVDAYYAPQAEAGIRWDDPDLDIPWPDM
EAVLSPKDAELPRLCDFASPFVYVP
>Mature_185_residues
MEFIRTEFPGLTCIRPRVFHDSRGFFLESFRARLFAEQGLPEEFVQDNHACSAQAGVVRGLHMQLPPAAQGKLVWVTRGS
VFDVALDLRTGSPTYGKAYTAVLSAANFLRLFIPRGFAHGYMTLEPHTEFQYKVDAYYAPQAEAGIRWDDPDLDIPWPDM
EAVLSPKDAELPRLCDFASPFVYVP

Specific function: Catalyzes the epimerization of the C3' and C5'positions of dTDP-6-deoxy-D-xylo-4-hexulose, forming dTDP-6-deoxy-L-lyxo-4- hexulose [H]

COG id: COG1898

COG function: function code M; dTDP-4-dehydrorhamnose 3,5-epimerase and related enzymes

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the dTDP-4-dehydrorhamnose 3,5-epimerase family [H]

Homologues:

Organism=Escherichia coli, GI1788350, Length=173, Percent_Identity=48.5549132947977, Blast_Score=158, Evalue=2e-40,
Organism=Caenorhabditis elegans, GI17550412, Length=168, Percent_Identity=42.2619047619048, Blast_Score=122, Evalue=8e-29,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011051
- InterPro:   IPR000888
- InterPro:   IPR014710
- ProDom:   PD001462 [H]

Pfam domain/function: PF00908 dTDP_sugar_isom [H]

EC number: =5.1.3.13 [H]

Molecular weight: Translated: 20860; Mature: 20860

Theoretical pI: Translated: 5.25; Mature: 5.25

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEFIRTEFPGLTCIRPRVFHDSRGFFLESFRARLFAEQGLPEEFVQDNHACSAQAGVVRG
CCCCCCCCCCEEEECCEEEECCCCHHHHHHHHHHHHHCCCCHHHHCCCCCCCCHHHHHCC
LHMQLPPAAQGKLVWVTRGSVFDVALDLRTGSPTYGKAYTAVLSAANFLRLFIPRGFAHG
EEEECCCCCCCEEEEEECCCEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCCC
YMTLEPHTEFQYKVDAYYAPQAEAGIRWDDPDLDIPWPDMEAVLSPKDAELPRLCDFASP
EEEECCCCCEEEEEEEEECCCCCCCCEECCCCCCCCCCCHHHHCCCCCCCCCHHHHCCCC
FVYVP
EEECC
>Mature Secondary Structure
MEFIRTEFPGLTCIRPRVFHDSRGFFLESFRARLFAEQGLPEEFVQDNHACSAQAGVVRG
CCCCCCCCCCEEEECCEEEECCCCHHHHHHHHHHHHHCCCCHHHHCCCCCCCCHHHHHCC
LHMQLPPAAQGKLVWVTRGSVFDVALDLRTGSPTYGKAYTAVLSAANFLRLFIPRGFAHG
EEEECCCCCCCEEEEEECCCEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCCC
YMTLEPHTEFQYKVDAYYAPQAEAGIRWDDPDLDIPWPDMEAVLSPKDAELPRLCDFASP
EEEECCCCCEEEEEEEEECCCCCCCCEECCCCCCCCCCCHHHHCCCCCCCCCHHHHCCCC
FVYVP
EEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]