BacMap

Definition	Desulfovibrio desulfuricans subsp. desulfuricans str. G20 chromosome, complete genome.
Accession	NC_007519
Length	3,730,232

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The map label for this gene is rfbB [H]

Identifier: 304570591

GI number: 304570591

Start: 2884310

End: 2885554

Strand: Reverse

Name: rfbB [H]

Synonym: NA

Alternate gene names: 304570591

Gene position: 2885554-2884310 (Counterclockwise)

Preceding gene: 78357937

Following gene: 78357935

Centisome position: 77.36

GC content: 45.06

Gene sequence:

>1245_bases
ATGACCAGACCCGTAATTTCAATCGACTCTCTCAGTAAGAAATACCGGCTACGTTGTTCCCAAGACACAACTTATCAAAC
TCTGCGTGAGGCTTTAACTTCAATCCCGGCAAGGCTTAGAAGTCGCCAGGAAAAGATGCAGGATTTTTGGGCTCTGCAAA
ATATTACCTTTGATGTTTTTGAGGGGGAACGCATTGGTATTATTGGGAGAAATGGTGCAGGGAAGTCTACCTTGCTAAAA
ATACTTTCTCGCATAACAGAACCTACAACAGGAGAGCTGGTCCTCCGGGGTCGCCTTGCGAGTTTGCTTGAAGTTGGCAC
TGGATTCCATCCAGAACTGACCGGAAGGGAGAATATCTTTTTGAACGGAGCCATTCTTGGCATGTCCAAAGCTGAGATTC
GCCAAAAGTTTGACGAGATTGTTGCCTTTGCTGAAGTAGAAAGTTTTCTTGATACGCCGGTAAAACGCTATTCATCAGGG
ATGTACGTCCGGCTTGCCTTTGCAGTTGCCGCACATCTTGAACCGGAAATTTTGATAGTCGATGAGGTTCTGGCAGTTGG
AGATGCTGCTTTTCAGAAAAAGTGCTTAGGAAAGATGGAAGATGCCAGCCGTAGCGGAAGGACTATTCTTTTTGTCAGTC
ACCAGATGAGTGCTGTTAAGCAATTATGTAGTCGTTCTATCGTGTTAGAATCTGGGCAGATTAAATATGATGGCGATGCG
GAGTCAGCTATAAGTTATTATATGAATAGCAACGTGGAGCAACTTCATAAAGGGATCAAGTTTGATGAGCAGCCTGCAGA
CCCAGTATTCCAATACAACTCGGTCACCTTGTTCCAGAATGGTAAGCCCGCACTGGACCCCATAGATGGCTCGCTGCCTC
TTGAGATACAGATTAGCTATTCAATCCTAAAGCAAGCAACCGGTTTGCGTATATTTATTGATATCGAAGACTACTGGGGC
ACGCTTCTCGTCCGCTCTTTTCATGATGAAGAAAAGTCTTCCCCTGATTCTTTTAGCCCGGGCGAATACACCTCGTCTGT
GTATATTCCCCCGGTCTTTGGCCCAAGCAGGTATAAACTAGCTGTAAAAGCTACTATTTATAATGTGCGCATGTGCTCGT
GGGAGAATGGAATACCTTTCTCTTTAAATGTATCGCACAGTGAAAACTGGGGAGGCCCTTATCCAAATGATACTTTTAGA
GCAAAGTTAACACCCCGATTCCCTTGGCAAACACAAAGGAGCTAG

Upstream 100 bases:
NA

Downstream 100 bases:
NA

Product: ATPase

Products: ADP; phosphate; L-glutamine [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 414; Mature: 413

Protein sequence:
NA

Sequences:

>Translated_414_residues
MTRPVISIDSLSKKYRLRCSQDTTYQTLREALTSIPARLRSRQEKMQDFWALQNITFDVFEGERIGIIGRNGAGKSTLLK
ILSRITEPTTGELVLRGRLASLLEVGTGFHPELTGRENIFLNGAILGMSKAEIRQKFDEIVAFAEVESFLDTPVKRYSSG
MYVRLAFAVAAHLEPEILIVDEVLAVGDAAFQKKCLGKMEDASRSGRTILFVSHQMSAVKQLCSRSIVLESGQIKYDGDA
ESAISYYMNSNVEQLHKGIKFDEQPADPVFQYNSVTLFQNGKPALDPIDGSLPLEIQISYSILKQATGLRIFIDIEDYWG
TLLVRSFHDEEKSSPDSFSPGEYTSSVYIPPVFGPSRYKLAVKATIYNVRMCSWENGIPFSLNVSHSENWGGPYPNDTFR
AKLTPRFPWQTQRS
>Mature_413_residues
TRPVISIDSLSKKYRLRCSQDTTYQTLREALTSIPARLRSRQEKMQDFWALQNITFDVFEGERIGIIGRNGAGKSTLLKI
LSRITEPTTGELVLRGRLASLLEVGTGFHPELTGRENIFLNGAILGMSKAEIRQKFDEIVAFAEVESFLDTPVKRYSSGM
YVRLAFAVAAHLEPEILIVDEVLAVGDAAFQKKCLGKMEDASRSGRTILFVSHQMSAVKQLCSRSIVLESGQIKYDGDAE
SAISYYMNSNVEQLHKGIKFDEQPADPVFQYNSVTLFQNGKPALDPIDGSLPLEIQISYSILKQATGLRIFIDIEDYWGT
LLVRSFHDEEKSSPDSFSPGEYTSSVYIPPVFGPSRYKLAVKATIYNVRMCSWENGIPFSLNVSHSENWGGPYPNDTFRA
KLTPRFPWQTQRS

Specific function: May form an ATP-driven O-antigen export apparatus, in association with RfbA [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transporter domain [H]

Homologues:

Organism=Homo sapiens, GI27436953, Length=197, Percent_Identity=29.4416243654822, Blast_Score=97, Evalue=2e-20,
Organism=Homo sapiens, GI153792144, Length=252, Percent_Identity=26.984126984127, Blast_Score=96, Evalue=8e-20,
Organism=Homo sapiens, GI27477115, Length=203, Percent_Identity=29.064039408867, Blast_Score=93, Evalue=5e-19,
Organism=Homo sapiens, GI6005701, Length=199, Percent_Identity=26.6331658291457, Blast_Score=89, Evalue=1e-17,
Organism=Homo sapiens, GI150417984, Length=206, Percent_Identity=27.1844660194175, Blast_Score=86, Evalue=7e-17,
Organism=Homo sapiens, GI31657092, Length=207, Percent_Identity=28.5024154589372, Blast_Score=86, Evalue=9e-17,
Organism=Homo sapiens, GI27262624, Length=250, Percent_Identity=25.2, Blast_Score=83, Evalue=4e-16,
Organism=Homo sapiens, GI27262626, Length=250, Percent_Identity=25.2, Blast_Score=83, Evalue=4e-16,
Organism=Homo sapiens, GI105990541, Length=239, Percent_Identity=25.5230125523013, Blast_Score=81, Evalue=2e-15,
Organism=Homo sapiens, GI45446740, Length=253, Percent_Identity=26.8774703557312, Blast_Score=79, Evalue=7e-15,
Organism=Homo sapiens, GI47078218, Length=253, Percent_Identity=26.8774703557312, Blast_Score=79, Evalue=7e-15,
Organism=Homo sapiens, GI30795238, Length=203, Percent_Identity=23.6453201970443, Blast_Score=79, Evalue=7e-15,
Organism=Homo sapiens, GI27881501, Length=203, Percent_Identity=23.6453201970443, Blast_Score=79, Evalue=1e-14,
Organism=Homo sapiens, GI116734710, Length=204, Percent_Identity=26.9607843137255, Blast_Score=74, Evalue=2e-13,
Organism=Homo sapiens, GI42741659, Length=213, Percent_Identity=25.8215962441315, Blast_Score=70, Evalue=3e-12,
Organism=Homo sapiens, GI148612844, Length=209, Percent_Identity=27.2727272727273, Blast_Score=69, Evalue=6e-12,
Organism=Homo sapiens, GI255708477, Length=209, Percent_Identity=27.2727272727273, Blast_Score=69, Evalue=7e-12,
Organism=Homo sapiens, GI73747915, Length=202, Percent_Identity=26.2376237623762, Blast_Score=68, Evalue=2e-11,
Organism=Homo sapiens, GI21536376, Length=196, Percent_Identity=24.4897959183673, Blast_Score=67, Evalue=3e-11,
Organism=Escherichia coli, GI1787029, Length=209, Percent_Identity=28.7081339712919, Blast_Score=86, Evalue=5e-18,
Organism=Escherichia coli, GI1786398, Length=202, Percent_Identity=28.2178217821782, Blast_Score=84, Evalue=1e-17,
Organism=Escherichia coli, GI87081709, Length=207, Percent_Identity=24.6376811594203, Blast_Score=81, Evalue=1e-16,
Organism=Escherichia coli, GI1787089, Length=209, Percent_Identity=26.7942583732057, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1790467, Length=197, Percent_Identity=27.4111675126904, Blast_Score=79, Evalue=4e-16,
Organism=Escherichia coli, GI1787758, Length=229, Percent_Identity=26.2008733624454, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI87081791, Length=224, Percent_Identity=23.2142857142857, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI48994943, Length=226, Percent_Identity=24.7787610619469, Blast_Score=77, Evalue=3e-15,
Organism=Escherichia coli, GI1789032, Length=233, Percent_Identity=23.6051502145923, Blast_Score=76, Evalue=4e-15,
Organism=Escherichia coli, GI1789891, Length=210, Percent_Identity=27.1428571428571, Blast_Score=75, Evalue=7e-15,
Organism=Escherichia coli, GI1788210, Length=201, Percent_Identity=29.8507462686567, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1787547, Length=240, Percent_Identity=24.5833333333333, Blast_Score=72, Evalue=5e-14,
Organism=Escherichia coli, GI1790525, Length=202, Percent_Identity=27.2277227722772, Blast_Score=71, Evalue=1e-13,
Organism=Escherichia coli, GI1788225, Length=220, Percent_Identity=25.9090909090909, Blast_Score=71, Evalue=2e-13,
Organism=Escherichia coli, GI1788450, Length=222, Percent_Identity=26.5765765765766, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1786981, Length=188, Percent_Identity=32.4468085106383, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1789672, Length=205, Percent_Identity=28.780487804878, Blast_Score=70, Evalue=3e-13,
Organism=Escherichia coli, GI1788761, Length=199, Percent_Identity=24.6231155778894, Blast_Score=70, Evalue=4e-13,
Organism=Escherichia coli, GI48995001, Length=211, Percent_Identity=27.0142180094787, Blast_Score=69, Evalue=8e-13,
Organism=Escherichia coli, GI87082267, Length=189, Percent_Identity=25.3968253968254, Blast_Score=68, Evalue=9e-13,
Organism=Escherichia coli, GI1789962, Length=211, Percent_Identity=26.0663507109005, Blast_Score=68, Evalue=1e-12,
Organism=Escherichia coli, GI1787370, Length=188, Percent_Identity=24.468085106383, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1786253, Length=202, Percent_Identity=27.2277227722772, Blast_Score=67, Evalue=3e-12,
Organism=Escherichia coli, GI1789873, Length=203, Percent_Identity=28.0788177339901, Blast_Score=66, Evalue=4e-12,
Organism=Escherichia coli, GI1786319, Length=195, Percent_Identity=25.1282051282051, Blast_Score=66, Evalue=5e-12,
Organism=Escherichia coli, GI1787112, Length=202, Percent_Identity=29.7029702970297, Blast_Score=65, Evalue=6e-12,
Organism=Escherichia coli, GI87081834, Length=200, Percent_Identity=27, Blast_Score=65, Evalue=9e-12,
Organism=Escherichia coli, GI1788897, Length=233, Percent_Identity=23.6051502145923, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI87081782, Length=299, Percent_Identity=24.0802675585284, Blast_Score=64, Evalue=2e-11,
Organism=Escherichia coli, GI1787792, Length=213, Percent_Identity=25.8215962441315, Blast_Score=64, Evalue=2e-11,
Organism=Escherichia coli, GI1790190, Length=239, Percent_Identity=25.1046025104602, Blast_Score=62, Evalue=7e-11,
Organism=Caenorhabditis elegans, GI115533608, Length=225, Percent_Identity=25.7777777777778, Blast_Score=80, Evalue=2e-15,
Organism=Caenorhabditis elegans, GI193209708, Length=211, Percent_Identity=28.436018957346, Blast_Score=72, Evalue=5e-13,
Organism=Caenorhabditis elegans, GI193202349, Length=218, Percent_Identity=27.0642201834862, Blast_Score=72, Evalue=7e-13,
Organism=Caenorhabditis elegans, GI17565586, Length=211, Percent_Identity=22.7488151658768, Blast_Score=71, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI71983516, Length=214, Percent_Identity=27.5700934579439, Blast_Score=69, Evalue=6e-12,
Organism=Caenorhabditis elegans, GI71983510, Length=214, Percent_Identity=27.5700934579439, Blast_Score=69, Evalue=6e-12,
Organism=Caenorhabditis elegans, GI71983523, Length=214, Percent_Identity=27.5700934579439, Blast_Score=69, Evalue=6e-12,
Organism=Caenorhabditis elegans, GI193208177, Length=217, Percent_Identity=28.5714285714286, Blast_Score=65, Evalue=1e-10,
Organism=Drosophila melanogaster, GI116007184, Length=185, Percent_Identity=28.1081081081081, Blast_Score=83, Evalue=3e-16,
Organism=Drosophila melanogaster, GI221500365, Length=185, Percent_Identity=28.1081081081081, Blast_Score=83, Evalue=3e-16,
Organism=Drosophila melanogaster, GI24648314, Length=207, Percent_Identity=27.536231884058, Blast_Score=79, Evalue=7e-15,
Organism=Drosophila melanogaster, GI221512771, Length=230, Percent_Identity=25.2173913043478, Blast_Score=76, Evalue=4e-14,
Organism=Drosophila melanogaster, GI24643674, Length=205, Percent_Identity=25.8536585365854, Blast_Score=75, Evalue=8e-14,
Organism=Drosophila melanogaster, GI24666092, Length=205, Percent_Identity=25.3658536585366, Blast_Score=71, Evalue=2e-12,
Organism=Drosophila melanogaster, GI28573571, Length=210, Percent_Identity=21.9047619047619, Blast_Score=69, Evalue=7e-12,
Organism=Drosophila melanogaster, GI28573573, Length=210, Percent_Identity=21.9047619047619, Blast_Score=69, Evalue=8e-12,
Organism=Drosophila melanogaster, GI24582014, Length=191, Percent_Identity=28.7958115183246, Blast_Score=66, Evalue=4e-11,
Organism=Drosophila melanogaster, GI24582012, Length=191, Percent_Identity=28.7958115183246, Blast_Score=66, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR003593 [H]

Pfam domain/function: PF00005 ABC_tran [H]

EC number: NA

Molecular weight: Translated: 46499; Mature: 46367

Theoretical pI: Translated: 7.12; Mature: 7.12

Prosite motif: PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTRPVISIDSLSKKYRLRCSQDTTYQTLREALTSIPARLRSRQEKMQDFWALQNITFDVF
CCCCEEEHHHCCCHHEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEE
EGERIGIIGRNGAGKSTLLKILSRITEPTTGELVLRGRLASLLEVGTGFHPELTGRENIF
CCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCEEEHHHHHHHHHHCCCCCCCCCCCCEEE
LNGAILGMSKAEIRQKFDEIVAFAEVESFLDTPVKRYSSGMYVRLAFAVAAHLEPEILIV
EEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCEEEEEEHHHHHCCCCEEEE
DEVLAVGDAAFQKKCLGKMEDASRSGRTILFVSHQMSAVKQLCSRSIVLESGQIKYDGDA
HHHHHHCHHHHHHHHHHHHHHCCCCCCEEEEECHHHHHHHHHHCCCEEEECCCEEECCCH
ESAISYYMNSNVEQLHKGIKFDEQPADPVFQYNSVTLFQNGKPALDPIDGSLPLEIQISY
HHHHHHHHCCCHHHHHCCCCCCCCCCCCCEECCCEEEEECCCCCCCCCCCCCCEEEEEEH
SILKQATGLRIFIDIEDYWGTLLVRSFHDEEKSSPDSFSPGEYTSSVYIPPVFGPSRYKL
HHHHHCCCCEEEEEEHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCCCEEE
AVKATIYNVRMCSWENGIPFSLNVSHSENWGGPYPNDTFRAKLTPRFPWQTQRS
EEEEEEEEEEEECCCCCCCEEEECCCCCCCCCCCCCCCEEEEECCCCCCCCCCC
>Mature Secondary Structure 
TRPVISIDSLSKKYRLRCSQDTTYQTLREALTSIPARLRSRQEKMQDFWALQNITFDVF
CCCEEEHHHCCCHHEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEE
EGERIGIIGRNGAGKSTLLKILSRITEPTTGELVLRGRLASLLEVGTGFHPELTGRENIF
CCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCEEEHHHHHHHHHHCCCCCCCCCCCCEEE
LNGAILGMSKAEIRQKFDEIVAFAEVESFLDTPVKRYSSGMYVRLAFAVAAHLEPEILIV
EEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCEEEEEEHHHHHCCCCEEEE
DEVLAVGDAAFQKKCLGKMEDASRSGRTILFVSHQMSAVKQLCSRSIVLESGQIKYDGDA
HHHHHHCHHHHHHHHHHHHHHCCCCCCEEEEECHHHHHHHHHHCCCEEEECCCEEECCCH
ESAISYYMNSNVEQLHKGIKFDEQPADPVFQYNSVTLFQNGKPALDPIDGSLPLEIQISY
HHHHHHHHCCCHHHHHCCCCCCCCCCCCCEECCCEEEEECCCCCCCCCCCCCCEEEEEEH
SILKQATGLRIFIDIEDYWGTLLVRSFHDEEKSSPDSFSPGEYTSSVYIPPVFGPSRYKL
HHHHHCCCCEEEEEEHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCCCEEE
AVKATIYNVRMCSWENGIPFSLNVSHSENWGGPYPNDTFRAKLTPRFPWQTQRS
EEEEEEEEEEEECCCCCCCEEEECCCCCCCCCCCCCCCEEEEECCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; L-glutamine [Periplasm]; H2O [C]

Specific reaction: ATP + L-glutamine [Periplasm] + H2O = ADP + phosphate + L-glutamine [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8626291 [H]