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The map label for this gene is nahR [H]

Identifier: 78357875

GI number: 78357875

Start: 2821021

End: 2821950

Strand: Reverse

Name: nahR [H]

Synonym: Dde_2834

Alternate gene names: 78357875

Gene position: 2821950-2821021 (Counterclockwise)

Preceding gene: 78357876

Following gene: 78357874

Centisome position: 75.65

GC content: 59.57

Gene sequence:

>930_bases
ATGGATATATCTTCCGTGAATCTGAATCTGCTTGTGGCGCTTAAGGCGCTGCTGGACGAAGGCAATGTGACCCGCGCGGC
GGAACGGCTGCATATCACACAGTCCGGCATGAGCAAAAATCTTGCGCAGCTGCGTGAACTGTTTGACGATCCGCTGCTTG
TGCGCTCCGGCAATGCGCTGGTGCTTACCGAGCGTGCCCGCGAGCTGGAAGGGCCGCTTGAGATGGTGCTGGGCAATGTA
CATGCTCTTTTCGAGGCACAGCGGTTTGACCCTGCAACCTGCCGCCGTTCGTTTACTCTGGCGGTGACGGACTATGTGGC
GCAATACATTCTGCCGGATGCGCTGGGGGCCATTCTTGCCGCCGCGCCGGGCATCGACATTCAGGCCATCGGGTGGGAGC
CTGACAGCATGCGTGCACTTGCCGAAGGCAAAATCGATATGGCCACATGCCTGACAGAAGGCGTGCCTGCCTCTGTGGAG
CAGCTGCGTGTGGGGGAAGACCGCTTTGCCTGTCTTATGCGCGCGGGGCACCCTCTGGCAGCTGCAGGAGCCATGAGACT
TGACAGATATGTGCAGGCGGACCATGCGGCTATCACCATAGGCGGCGACAAGGTGCGCATAATCGACAGGGTGCTGGGCA
AGCTGGGGCATTCCCGCAACATCAGGCTGCGGGTGCCGTTTTATGCCTCTGCCGTGGAAATAGTTTCGCGTACGGATCTG
CTGCTTACCCTGCCGGCGCATGTGGCGCGCAATGTCATTCAGGCGCGCAACCCCAGTGAACCGGCCCTTGCCTGGGCTCC
GCTGCCGTTTGCCGTGGATTCGTTCGAATATTCCATCATATGGCACGCCCGTTTTCATGGCGATCCCGGACACCGCTGGG
TGCGCGAGATGCTTTTTGCGCAGATGCAGTCCTCACTTTTTGCACATTGA

Upstream 100 bases:

>100_bases
GGCTGCCGCGGTGTGCCGTGGCGGCATGTGCACCCGTGCGGCCGCTGCGGCCGAGGTCCGGTGCCGTTTGCAGCGGTGCA
TGGTATAAAGAAGGCGGACA

Downstream 100 bases:

>100_bases
TATGCGGCGGGATACCGCCGTGCAGTATTCAGGAGCTAATATGACAGAGTCGGTGCTGACCCTGCTGACCATCTGTTTTT
TTGCCCGCATGACTCCGGGA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 309; Mature: 309

Protein sequence:

>309_residues
MDISSVNLNLLVALKALLDEGNVTRAAERLHITQSGMSKNLAQLRELFDDPLLVRSGNALVLTERARELEGPLEMVLGNV
HALFEAQRFDPATCRRSFTLAVTDYVAQYILPDALGAILAAAPGIDIQAIGWEPDSMRALAEGKIDMATCLTEGVPASVE
QLRVGEDRFACLMRAGHPLAAAGAMRLDRYVQADHAAITIGGDKVRIIDRVLGKLGHSRNIRLRVPFYASAVEIVSRTDL
LLTLPAHVARNVIQARNPSEPALAWAPLPFAVDSFEYSIIWHARFHGDPGHRWVREMLFAQMQSSLFAH

Sequences:

>Translated_309_residues
MDISSVNLNLLVALKALLDEGNVTRAAERLHITQSGMSKNLAQLRELFDDPLLVRSGNALVLTERARELEGPLEMVLGNV
HALFEAQRFDPATCRRSFTLAVTDYVAQYILPDALGAILAAAPGIDIQAIGWEPDSMRALAEGKIDMATCLTEGVPASVE
QLRVGEDRFACLMRAGHPLAAAGAMRLDRYVQADHAAITIGGDKVRIIDRVLGKLGHSRNIRLRVPFYASAVEIVSRTDL
LLTLPAHVARNVIQARNPSEPALAWAPLPFAVDSFEYSIIWHARFHGDPGHRWVREMLFAQMQSSLFAH
>Mature_309_residues
MDISSVNLNLLVALKALLDEGNVTRAAERLHITQSGMSKNLAQLRELFDDPLLVRSGNALVLTERARELEGPLEMVLGNV
HALFEAQRFDPATCRRSFTLAVTDYVAQYILPDALGAILAAAPGIDIQAIGWEPDSMRALAEGKIDMATCLTEGVPASVE
QLRVGEDRFACLMRAGHPLAAAGAMRLDRYVQADHAAITIGGDKVRIIDRVLGKLGHSRNIRLRVPFYASAVEIVSRTDL
LLTLPAHVARNVIQARNPSEPALAWAPLPFAVDSFEYSIIWHARFHGDPGHRWVREMLFAQMQSSLFAH

Specific function: Regulates the expression of the naphthalene (nahA-F) and salicylate (nahG-M) metabolism genes [H]

COG id: COG0583

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790147, Length=303, Percent_Identity=26.7326732673267, Blast_Score=89, Evalue=2e-19,
Organism=Escherichia coli, GI87081684, Length=297, Percent_Identity=24.2424242424242, Blast_Score=83, Evalue=3e-17,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33957; Mature: 33957

Theoretical pI: Translated: 6.68; Mature: 6.68

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDISSVNLNLLVALKALLDEGNVTRAAERLHITQSGMSKNLAQLRELFDDPLLVRSGNAL
CCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCEE
VLTERARELEGPLEMVLGNVHALFEAQRFDPATCRRSFTLAVTDYVAQYILPDALGAILA
EEECHHHHHCCHHHHHHHHHHHHHHHHCCCHHHHHCEEEEHHHHHHHHHHHHHHHHHHHH
AAPGIDIQAIGWEPDSMRALAEGKIDMATCLTEGVPASVEQLRVGEDRFACLMRAGHPLA
HCCCCCEEEECCCCHHHHHHHCCCHHHHHHHHCCCCCCHHHHHCCCHHHHHHHHCCCCHH
AAGAMRLDRYVQADHAAITIGGDKVRIIDRVLGKLGHSRNIRLRVPFYASAVEIVSRTDL
HHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHCCCCCCEEEEECHHHHHHHHHHHCCE
LLTLPAHVARNVIQARNPSEPALAWAPLPFAVDSFEYSIIWHARFHGDPGHRWVREMLFA
EEECHHHHHHHHHHCCCCCCCCEEECCCCCEECCEEEEEEEEEEECCCCHHHHHHHHHHH
QMQSSLFAH
HHHHHHCCC
>Mature Secondary Structure
MDISSVNLNLLVALKALLDEGNVTRAAERLHITQSGMSKNLAQLRELFDDPLLVRSGNAL
CCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCEE
VLTERARELEGPLEMVLGNVHALFEAQRFDPATCRRSFTLAVTDYVAQYILPDALGAILA
EEECHHHHHCCHHHHHHHHHHHHHHHHCCCHHHHHCEEEEHHHHHHHHHHHHHHHHHHHH
AAPGIDIQAIGWEPDSMRALAEGKIDMATCLTEGVPASVEQLRVGEDRFACLMRAGHPLA
HCCCCCEEEECCCCHHHHHHHCCCHHHHHHHHCCCCCCHHHHHCCCHHHHHHHHCCCCHH
AAGAMRLDRYVQADHAAITIGGDKVRIIDRVLGKLGHSRNIRLRVPFYASAVEIVSRTDL
HHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHCCCCCCEEEEECHHHHHHHHHHHCCE
LLTLPAHVARNVIQARNPSEPALAWAPLPFAVDSFEYSIIWHARFHGDPGHRWVREMLFA
EEECHHHHHHHHHHCCCCCCCCEEECCCCCEECCEEEEEEEEEEECCCCHHHHHHHHHHH
QMQSSLFAH
HHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2703465; 2848005 [H]