| Definition | Desulfovibrio desulfuricans subsp. desulfuricans str. G20 chromosome, complete genome. |
|---|---|
| Accession | NC_007519 |
| Length | 3,730,232 |
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The map label for this gene is 78357786
Identifier: 78357786
GI number: 78357786
Start: 2747502
End: 2748614
Strand: Direct
Name: 78357786
Synonym: Dde_2744
Alternate gene names: NA
Gene position: 2747502-2748614 (Clockwise)
Preceding gene: 78357785
Following gene: 78357788
Centisome position: 73.65
GC content: 64.06
Gene sequence:
>1113_bases ATGAACGCTTACACTGAAATTCCCATGGTTCCGGGGCCCACCACCCTGCACCCCGATGCACTGGCGGCCATGGGCCGTGA TTACGGTTCAGGACAGATAGAAACTGCCTACCTGCAGCTGTATGCAGACACGCAGAAACTGCTGGGCACGCTGGCGGGTA CCGGCAACGATATGGTGATAATGACCGGCGAAGGCATGCTGGCCCTGTGGGGAGCGCTGAAGAGCTGTCTGGCTCCCGGT GACAGGGTGCTCAGCGTGGCCACAGGCGTCTTCGGCGACGGCATAGGCGACATGGCCGCCGGTCTGGGCTGCGAAGTGCG CAAAATCACACTGCCCTTCAACGCCACGCTGGACGACCTGACCGCCGTGGAAGAGGCTGTCGACCGTTTCAGGCCGCGCA TGATCACCGCCGTGCACTGTGAAACGCCGTCCGGCACGCTGAACCCGCTGGCAGAACTGGGCAGGCTCAAAGCAGCCATG AATGTTCCGCTTTTCTATGTTGACGCCGTGGCAAGCCTTGGCGGCGCTCCCGTAATGGCCGACGACTGGCATGTGGACCT GCTGCTCGGCGGCTCGCAGAAATGCCTCTCCGCACCGCCTTCCATGGCCTTTGTGGGAGTAAGCCCCGCCGCATGGGAGG CAGTGGAACAGCGGGCCTATCAGGGCTACGACGCACTGGGACCTTTCCGTACAGTGCACAGCGACGGCCGCTGCCCGTAT ACCCCGTACTGGCACGGCACGGCGGCGCTGCATGCCGCCGCCGCGGCCATTGTTGCCGAAGGAACCGAACAGGTTTTTGC GCGGCACCGCAATGTGGCCCGGCAATGCCGCGACGGTCTGCAGGAGATGGACATCAGGTTGTTCACCGCTGAAAACGCTG TGAATTCACCCACAGTAACCGCGGCACTGGTTCCCCGAGGCTGGGAATGCGCTGCATGGCTGCAGGCGCTTGCCGCACGC GGTCTGCGCGCCGCAGGCAGCTTCGGCCCCATGGCGGGCAAGGTGTTCCGGCTGGGGCATATGGGTACACAGGCACATCC CCGGCTGATGGAAAAAGCCCTGCAGGTCATGGCGCAGGTGCTGGAACAGGGTCCGGCGGCATCCCGCCGCTGA
Upstream 100 bases:
>100_bases GTTTTTCACGCACCGGCGGTCTTTTTCTGGGTACTCCGGTCGCCCCCGACGAAGTGGAACTGGTGGACCTGTAACAACCG GCAACGCCGGAGGAAACGGC
Downstream 100 bases:
>100_bases CGCTGCGCACATGGTTATCTGAAAAAATGTCCGGCACGGCGTACAAGCTGCGCCGGACTTTTTTTCACTCCCGCGCCGGC CGCGCGCAGGCAAAAGCAGT
Product: class V aminotransferase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 370; Mature: 370
Protein sequence:
>370_residues MNAYTEIPMVPGPTTLHPDALAAMGRDYGSGQIETAYLQLYADTQKLLGTLAGTGNDMVIMTGEGMLALWGALKSCLAPG DRVLSVATGVFGDGIGDMAAGLGCEVRKITLPFNATLDDLTAVEEAVDRFRPRMITAVHCETPSGTLNPLAELGRLKAAM NVPLFYVDAVASLGGAPVMADDWHVDLLLGGSQKCLSAPPSMAFVGVSPAAWEAVEQRAYQGYDALGPFRTVHSDGRCPY TPYWHGTAALHAAAAAIVAEGTEQVFARHRNVARQCRDGLQEMDIRLFTAENAVNSPTVTAALVPRGWECAAWLQALAAR GLRAAGSFGPMAGKVFRLGHMGTQAHPRLMEKALQVMAQVLEQGPAASRR
Sequences:
>Translated_370_residues MNAYTEIPMVPGPTTLHPDALAAMGRDYGSGQIETAYLQLYADTQKLLGTLAGTGNDMVIMTGEGMLALWGALKSCLAPG DRVLSVATGVFGDGIGDMAAGLGCEVRKITLPFNATLDDLTAVEEAVDRFRPRMITAVHCETPSGTLNPLAELGRLKAAM NVPLFYVDAVASLGGAPVMADDWHVDLLLGGSQKCLSAPPSMAFVGVSPAAWEAVEQRAYQGYDALGPFRTVHSDGRCPY TPYWHGTAALHAAAAAIVAEGTEQVFARHRNVARQCRDGLQEMDIRLFTAENAVNSPTVTAALVPRGWECAAWLQALAAR GLRAAGSFGPMAGKVFRLGHMGTQAHPRLMEKALQVMAQVLEQGPAASRR >Mature_370_residues MNAYTEIPMVPGPTTLHPDALAAMGRDYGSGQIETAYLQLYADTQKLLGTLAGTGNDMVIMTGEGMLALWGALKSCLAPG DRVLSVATGVFGDGIGDMAAGLGCEVRKITLPFNATLDDLTAVEEAVDRFRPRMITAVHCETPSGTLNPLAELGRLKAAM NVPLFYVDAVASLGGAPVMADDWHVDLLLGGSQKCLSAPPSMAFVGVSPAAWEAVEQRAYQGYDALGPFRTVHSDGRCPY TPYWHGTAALHAAAAAIVAEGTEQVFARHRNVARQCRDGLQEMDIRLFTAENAVNSPTVTAALVPRGWECAAWLQALAAR GLRAAGSFGPMAGKVFRLGHMGTQAHPRLMEKALQVMAQVLEQGPAASRR
Specific function: Unknown
COG id: COG0075
COG function: function code E; Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family [H]
Homologues:
Organism=Homo sapiens, GI4557289, Length=364, Percent_Identity=28.2967032967033, Blast_Score=135, Evalue=8e-32, Organism=Caenorhabditis elegans, GI17536281, Length=362, Percent_Identity=27.9005524861878, Blast_Score=142, Evalue=3e-34, Organism=Saccharomyces cerevisiae, GI6321079, Length=371, Percent_Identity=23.989218328841, Blast_Score=77, Evalue=4e-15, Organism=Drosophila melanogaster, GI17530823, Length=365, Percent_Identity=27.3972602739726, Blast_Score=120, Evalue=2e-27,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000192 - InterPro: IPR015424 - InterPro: IPR015421 - InterPro: IPR015422 [H]
Pfam domain/function: PF00266 Aminotran_5 [H]
EC number: 2.6.1.-
Molecular weight: Translated: 39204; Mature: 39204
Theoretical pI: Translated: 6.23; Mature: 6.23
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.9 %Cys (Translated Protein) 4.3 %Met (Translated Protein) 6.2 %Cys+Met (Translated Protein) 1.9 %Cys (Mature Protein) 4.3 %Met (Mature Protein) 6.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNAYTEIPMVPGPTTLHPDALAAMGRDYGSGQIETAYLQLYADTQKLLGTLAGTGNDMVI CCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCEEEEEEEEHHHHHHHHHHHCCCCCCEEE MTGEGMLALWGALKSCLAPGDRVLSVATGVFGDGIGDMAAGLGCEVRKITLPFNATLDDL EECCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHCCCCEEEEEEECCCCCHHHH TAVEEAVDRFRPRMITAVHCETPSGTLNPLAELGRLKAAMNVPLFYVDAVASLGGAPVMA HHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCEEE DDWHVDLLLGGSQKCLSAPPSMAFVGVSPAAWEAVEQRAYQGYDALGPFRTVHSDGRCPY CCCEEEEEECCCHHHHCCCCCEEEEECCHHHHHHHHHHHHCCCCCCCCHHHHCCCCCCCC TPYWHGTAALHAAAAAIVAEGTEQVFARHRNVARQCRDGLQEMDIRLFTAENAVNSPTVT CCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCEE AALVPRGWECAAWLQALAARGLRAAGSFGPMAGKVFRLGHMGTQAHPRLMEKALQVMAQV EEECCCCCHHHHHHHHHHHCCCHHCCCCCCCCHHHEEECCCCCCCCHHHHHHHHHHHHHH LEQGPAASRR HHCCCCCCCC >Mature Secondary Structure MNAYTEIPMVPGPTTLHPDALAAMGRDYGSGQIETAYLQLYADTQKLLGTLAGTGNDMVI CCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCEEEEEEEEHHHHHHHHHHHCCCCCCEEE MTGEGMLALWGALKSCLAPGDRVLSVATGVFGDGIGDMAAGLGCEVRKITLPFNATLDDL EECCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHCCCCEEEEEEECCCCCHHHH TAVEEAVDRFRPRMITAVHCETPSGTLNPLAELGRLKAAMNVPLFYVDAVASLGGAPVMA HHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCEEE DDWHVDLLLGGSQKCLSAPPSMAFVGVSPAAWEAVEQRAYQGYDALGPFRTVHSDGRCPY CCCEEEEEECCCHHHHCCCCCEEEEECCHHHHHHHHHHHHCCCCCCCCHHHHCCCCCCCC TPYWHGTAALHAAAAAIVAEGTEQVFARHRNVARQCRDGLQEMDIRLFTAENAVNSPTVT CCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCEE AALVPRGWECAAWLQALAARGLRAAGSFGPMAGKVFRLGHMGTQAHPRLMEKALQVMAQV EEECCCCCHHHHHHHHHHHCCCHHCCCCCCCCHHHEEECCCCCCCCHHHHHHHHHHHHHH LEQGPAASRR HHCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 8688087 [H]