| Definition | Desulfovibrio desulfuricans subsp. desulfuricans str. G20 chromosome, complete genome. |
|---|---|
| Accession | NC_007519 |
| Length | 3,730,232 |
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The map label for this gene is tktA [H]
Identifier: 78357673
GI number: 78357673
Start: 2646743
End: 2648737
Strand: Reverse
Name: tktA [H]
Synonym: Dde_2631
Alternate gene names: 78357673
Gene position: 2648737-2646743 (Counterclockwise)
Preceding gene: 78357674
Following gene: 78357672
Centisome position: 71.01
GC content: 61.25
Gene sequence:
>1995_bases ATGGCTTCCCGCAAGGATCTTGCCAACGCTATCCGCGCACTCAGCATGGACGCCGTGGAAAAGGCCAAATCAGGCCACCC CGGTGCGCCCATGGGTATGGCCGACATGGCCGAAGTTCTGTGGAACGATTTCATGAAGCATAACCCCGCCAACCCCGGCT GGGCAGACCGCGACCGCTTCGTGCTTTCCAACGGACACGGTTCCATGCTTATTTATTCGCTGCTGCACCTTTCCGGCTAC GATCTCAGCATCGACGACATCAGAAATTTCCGGCAGCTGCATTCCAAAACTCCGGGCCACCCCGAATACGGCGTGACCCC CGGCGTGGAAACCACCACCGGCCCGCTGGGGCAGGGCATCGCCACGGCCGTGGGCATGGCCATGGCAGAACGCATGCTGG CCGAAGCCTTCAACCGCGACGGATTCACCGTTGTCGATCACCACACCTATGTGTTTCTGGGTGACGGCTGCATGATGGAA GGTCTGTCGCATGAAGCCTGCTCTCTGGCCGGTACGCTGGGCCTGGGCAAGCTTGTGGCGCTGTACGATGATAACGGCAT TTCCATTGACGGTCGTATCGACAGCTGGTTCGGCGATGATACCCCCGCCCGTTTCCGTGCCTACGGCTGGCATGTGGTGG CCGGTGTGGACGGACACGATGCCGAAGCCGTGCGCAAAGCCATTGAAGAAGCCAGAGCAGAAACAGGACGTCCCAGCCTG ATCTGCTGCAAGACCAAGATAGGCATGGGCGCCCCCAATATGGCTGATTCCAGCAAAGTGCACGGTGCGCCGCTGGGTGC GGATGAAATAGCCGCCACCCGCGCCAACATAGGTTGGAATCATCCTCCGTTCGAGATTCCGGCCGATGTGTATGCAGGTT GGGACGCACGGCCCAGAGGCGCTGCCGCCCAGCAGGTATGGGATGACATGTTTGCTGCTTATGCCGCAGCACACCCTGCG CTTGCCGCGGAATTCACCCGCCGCATGGCAGGCGATCTGCCCGAAGGCTGGAAGGAGCTTTGCGAAAAAGCACTGGCGCA GATTGTGGCCGCTGCCGAAAACCTTGCCACCCGCAAGGCCTGCAACAAATCGCTTGAAGCCATCGGCCCTGCGCTGCCCG AAATGGTGGGCGGTTCCGCCGACCTTACCGGCTCCGTAGGTACCAAATGGAGTGGCAGCAGGCTGCTGGACAGCGCCAAC TGGGGCGGCAACTATATTTCCTATGGTGTGCGTGAGTTCGCCATGGGTGCCATCATGAACGGCCTGACCCTGCATGGCGG CTTCCTGCCTTACGCCGGTACGTTCCTCATTTTCTCCGATTACGCCAAAAATGCGTTCCGTCTTTCCGCGCTGATGGGCA TCCGCACCGTCTGGGTGCTGACGCACGACTCCATCGGTGTGGGCGAAGACGGCCCCACGCACCAGCCGGTGGAACAGCTG GCCGGTCTGCGTCTTATTCCCGGGGCTCATGTGTGGCGCCCCTGCGATACCGTGGAAACTCAGGTTGCCTGGCAGAGTGC CGTTGAATACAAAAACGGCCCCACAGCGCTGTCGTTTACGCGGCAGGGTGTGCCTTTCATGCAGCGTGATGATGCCGCAG TGCGGAACATCGCCCGCGGCGGTTATGTGCTGCGTGACTGCGAGGGTACCCCGGAAGTCATCCTTATCGCCACCGGTTCG GAAGTGGGCGTGGCCGCCGGAGCCTGCGACAGGCTGACAGCCGAAGGCCGCAGGGTACGGCTTGTTTCCATGCCGTGCAG CAATATCTTCGACCGGCAGGACGCCGCCTACCGTGAATCGGTACTGCCCGCAGCTGTTGAGGCCCGTGTGGCCGTTGAAG CCGCCGCTTCTGACTTCTGGTGGAAATACGTGGGGCTGAAAGGCCGCGTGGTGGGTATGACCACCTTTGGCGAATCCGCC CCCGGCAAGGTGCTGTTCGAACACTTCGGCTTTACGGCAGACAATGTGGCTGCCGTGGCAAAAGAAGTGCTGTAG
Upstream 100 bases:
>100_bases AATGATTTCAGTGGTTGTCTTCCCCGCTTCAAGCGACTAGGGATGCACCAGCCGGCGCGGGTTTACGCACCGGCAATCAG TCACTCTTCAGGAGGATCAG
Downstream 100 bases:
>100_bases CGTTTTTCGGGGATGACCCCGGACGCTGTTCCATGTACAACAAAAGGTGCGGGTGTGATGCATGATCACATTCGCACCTT TTTTATGCTGTATCCTTCAG
Product: transketolase
Products: NA
Alternate protein names: TK [H]
Number of amino acids: Translated: 664; Mature: 663
Protein sequence:
>664_residues MASRKDLANAIRALSMDAVEKAKSGHPGAPMGMADMAEVLWNDFMKHNPANPGWADRDRFVLSNGHGSMLIYSLLHLSGY DLSIDDIRNFRQLHSKTPGHPEYGVTPGVETTTGPLGQGIATAVGMAMAERMLAEAFNRDGFTVVDHHTYVFLGDGCMME GLSHEACSLAGTLGLGKLVALYDDNGISIDGRIDSWFGDDTPARFRAYGWHVVAGVDGHDAEAVRKAIEEARAETGRPSL ICCKTKIGMGAPNMADSSKVHGAPLGADEIAATRANIGWNHPPFEIPADVYAGWDARPRGAAAQQVWDDMFAAYAAAHPA LAAEFTRRMAGDLPEGWKELCEKALAQIVAAAENLATRKACNKSLEAIGPALPEMVGGSADLTGSVGTKWSGSRLLDSAN WGGNYISYGVREFAMGAIMNGLTLHGGFLPYAGTFLIFSDYAKNAFRLSALMGIRTVWVLTHDSIGVGEDGPTHQPVEQL AGLRLIPGAHVWRPCDTVETQVAWQSAVEYKNGPTALSFTRQGVPFMQRDDAAVRNIARGGYVLRDCEGTPEVILIATGS EVGVAAGACDRLTAEGRRVRLVSMPCSNIFDRQDAAYRESVLPAAVEARVAVEAAASDFWWKYVGLKGRVVGMTTFGESA PGKVLFEHFGFTADNVAAVAKEVL
Sequences:
>Translated_664_residues MASRKDLANAIRALSMDAVEKAKSGHPGAPMGMADMAEVLWNDFMKHNPANPGWADRDRFVLSNGHGSMLIYSLLHLSGY DLSIDDIRNFRQLHSKTPGHPEYGVTPGVETTTGPLGQGIATAVGMAMAERMLAEAFNRDGFTVVDHHTYVFLGDGCMME GLSHEACSLAGTLGLGKLVALYDDNGISIDGRIDSWFGDDTPARFRAYGWHVVAGVDGHDAEAVRKAIEEARAETGRPSL ICCKTKIGMGAPNMADSSKVHGAPLGADEIAATRANIGWNHPPFEIPADVYAGWDARPRGAAAQQVWDDMFAAYAAAHPA LAAEFTRRMAGDLPEGWKELCEKALAQIVAAAENLATRKACNKSLEAIGPALPEMVGGSADLTGSVGTKWSGSRLLDSAN WGGNYISYGVREFAMGAIMNGLTLHGGFLPYAGTFLIFSDYAKNAFRLSALMGIRTVWVLTHDSIGVGEDGPTHQPVEQL AGLRLIPGAHVWRPCDTVETQVAWQSAVEYKNGPTALSFTRQGVPFMQRDDAAVRNIARGGYVLRDCEGTPEVILIATGS EVGVAAGACDRLTAEGRRVRLVSMPCSNIFDRQDAAYRESVLPAAVEARVAVEAAASDFWWKYVGLKGRVVGMTTFGESA PGKVLFEHFGFTADNVAAVAKEVL >Mature_663_residues ASRKDLANAIRALSMDAVEKAKSGHPGAPMGMADMAEVLWNDFMKHNPANPGWADRDRFVLSNGHGSMLIYSLLHLSGYD LSIDDIRNFRQLHSKTPGHPEYGVTPGVETTTGPLGQGIATAVGMAMAERMLAEAFNRDGFTVVDHHTYVFLGDGCMMEG LSHEACSLAGTLGLGKLVALYDDNGISIDGRIDSWFGDDTPARFRAYGWHVVAGVDGHDAEAVRKAIEEARAETGRPSLI CCKTKIGMGAPNMADSSKVHGAPLGADEIAATRANIGWNHPPFEIPADVYAGWDARPRGAAAQQVWDDMFAAYAAAHPAL AAEFTRRMAGDLPEGWKELCEKALAQIVAAAENLATRKACNKSLEAIGPALPEMVGGSADLTGSVGTKWSGSRLLDSANW GGNYISYGVREFAMGAIMNGLTLHGGFLPYAGTFLIFSDYAKNAFRLSALMGIRTVWVLTHDSIGVGEDGPTHQPVEQLA GLRLIPGAHVWRPCDTVETQVAWQSAVEYKNGPTALSFTRQGVPFMQRDDAAVRNIARGGYVLRDCEGTPEVILIATGSE VGVAAGACDRLTAEGRRVRLVSMPCSNIFDRQDAAYRESVLPAAVEARVAVEAAASDFWWKYVGLKGRVVGMTTFGESAP GKVLFEHFGFTADNVAAVAKEVL
Specific function: Unknown
COG id: COG0021
COG function: function code G; Transketolase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the transketolase family [H]
Homologues:
Organism=Homo sapiens, GI205277463, Length=603, Percent_Identity=25.7048092868988, Blast_Score=157, Evalue=3e-38, Organism=Homo sapiens, GI4507521, Length=603, Percent_Identity=25.7048092868988, Blast_Score=157, Evalue=3e-38, Organism=Homo sapiens, GI133778974, Length=579, Percent_Identity=26.0794473229706, Blast_Score=144, Evalue=3e-34, Organism=Homo sapiens, GI225637459, Length=582, Percent_Identity=23.3676975945017, Blast_Score=114, Evalue=4e-25, Organism=Homo sapiens, GI225637463, Length=503, Percent_Identity=23.2604373757455, Blast_Score=99, Evalue=1e-20, Organism=Homo sapiens, GI225637461, Length=552, Percent_Identity=23.0072463768116, Blast_Score=99, Evalue=1e-20, Organism=Escherichia coli, GI48994911, Length=664, Percent_Identity=64.7590361445783, Blast_Score=921, Evalue=0.0, Organism=Escherichia coli, GI1788808, Length=662, Percent_Identity=62.3867069486405, Blast_Score=882, Evalue=0.0, Organism=Caenorhabditis elegans, GI17539652, Length=684, Percent_Identity=26.0233918128655, Blast_Score=168, Evalue=8e-42, Organism=Saccharomyces cerevisiae, GI6325331, Length=669, Percent_Identity=47.3841554559043, Blast_Score=592, Evalue=1e-170, Organism=Saccharomyces cerevisiae, GI6319593, Length=667, Percent_Identity=44.0779610194903, Blast_Score=553, Evalue=1e-158, Organism=Drosophila melanogaster, GI45551847, Length=689, Percent_Identity=26.7053701015965, Blast_Score=174, Evalue=1e-43, Organism=Drosophila melanogaster, GI45550715, Length=689, Percent_Identity=26.7053701015965, Blast_Score=174, Evalue=1e-43, Organism=Drosophila melanogaster, GI24645119, Length=655, Percent_Identity=26.1068702290076, Blast_Score=149, Evalue=7e-36, Organism=Drosophila melanogaster, GI24666278, Length=265, Percent_Identity=30.9433962264151, Blast_Score=122, Evalue=7e-28,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR009014 - InterPro: IPR015941 - InterPro: IPR005475 - InterPro: IPR005478 - InterPro: IPR020826 - InterPro: IPR005476 - InterPro: IPR005474 [H]
Pfam domain/function: PF02779 Transket_pyr; PF02780 Transketolase_C; PF00456 Transketolase_N [H]
EC number: =2.2.1.1 [H]
Molecular weight: Translated: 71047; Mature: 70916
Theoretical pI: Translated: 5.80; Mature: 5.80
Prosite motif: PS00801 TRANSKETOLASE_1 ; PS00802 TRANSKETOLASE_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 3.5 %Met (Translated Protein) 5.0 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 3.3 %Met (Mature Protein) 4.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MASRKDLANAIRALSMDAVEKAKSGHPGAPMGMADMAEVLWNDFMKHNPANPGWADRDRF CCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCE VLSNGHGSMLIYSLLHLSGYDLSIDDIRNFRQLHSKTPGHPEYGVTPGVETTTGPLGQGI EEECCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHH ATAVGMAMAERMLAEAFNRDGFTVVDHHTYVFLGDGCMMEGLSHEACSLAGTLGLGKLVA HHHHHHHHHHHHHHHHHCCCCCEEEECCEEEEECCCHHHCCCCHHHHHHHHHCCCCEEEE LYDDNGISIDGRIDSWFGDDTPARFRAYGWHVVAGVDGHDAEAVRKAIEEARAETGRPSL EECCCCEEECCCCCCCCCCCCCHHHEEECEEEEECCCCCCHHHHHHHHHHHHHHCCCCCE ICCKTKIGMGAPNMADSSKVHGAPLGADEIAATRANIGWNHPPFEIPADVYAGWDARPRG EEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCHHHHCCCCCCCCC AAAQQVWDDMFAAYAAAHPALAAEFTRRMAGDLPEGWKELCEKALAQIVAAAENLATRKA HHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH CNKSLEAIGPALPEMVGGSADLTGSVGTKWSGSRLLDSANWGGNYISYGVREFAMGAIMN HHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCHHCCCCCCCCHHHHHHHHHHHHHHHHC GLTLHGGFLPYAGTFLIFSDYAKNAFRLSALMGIRTVWVLTHDSIGVGEDGPTHQPVEQL CCEECCCCHHHHCCEEEEEHHHCHHHHHHHHHHHEEEEEEEECCCCCCCCCCCCCHHHHH AGLRLIPGAHVWRPCDTVETQVAWQSAVEYKNGPTALSFTRQGVPFMQRDDAAVRNIARG CCEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCHHHHHHHHC GYVLRDCEGTPEVILIATGSEVGVAAGACDRLTAEGRRVRLVSMPCSNIFDRQDAAYRES CCEEEECCCCCCEEEEECCCCCCCCCCCHHHHCCCCCEEEEEECCHHHHHCCCHHHHHHH VLPAAVEARVAVEAAASDFWWKYVGLKGRVVGMTTFGESAPGKVLFEHFGFTADNVAAVA HCHHHHHHHHHHHHHHHHHHHHEECCCCEEEEEEECCCCCCCHHHHHHCCCCHHHHHHHH KEVL HHCC >Mature Secondary Structure ASRKDLANAIRALSMDAVEKAKSGHPGAPMGMADMAEVLWNDFMKHNPANPGWADRDRF CCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCE VLSNGHGSMLIYSLLHLSGYDLSIDDIRNFRQLHSKTPGHPEYGVTPGVETTTGPLGQGI EEECCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHH ATAVGMAMAERMLAEAFNRDGFTVVDHHTYVFLGDGCMMEGLSHEACSLAGTLGLGKLVA HHHHHHHHHHHHHHHHHCCCCCEEEECCEEEEECCCHHHCCCCHHHHHHHHHCCCCEEEE LYDDNGISIDGRIDSWFGDDTPARFRAYGWHVVAGVDGHDAEAVRKAIEEARAETGRPSL EECCCCEEECCCCCCCCCCCCCHHHEEECEEEEECCCCCCHHHHHHHHHHHHHHCCCCCE ICCKTKIGMGAPNMADSSKVHGAPLGADEIAATRANIGWNHPPFEIPADVYAGWDARPRG EEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCHHHHCCCCCCCCC AAAQQVWDDMFAAYAAAHPALAAEFTRRMAGDLPEGWKELCEKALAQIVAAAENLATRKA HHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH CNKSLEAIGPALPEMVGGSADLTGSVGTKWSGSRLLDSANWGGNYISYGVREFAMGAIMN HHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCHHCCCCCCCCHHHHHHHHHHHHHHHHC GLTLHGGFLPYAGTFLIFSDYAKNAFRLSALMGIRTVWVLTHDSIGVGEDGPTHQPVEQL CCEECCCCHHHHCCEEEEEHHHCHHHHHHHHHHHEEEEEEEECCCCCCCCCCCCCHHHHH AGLRLIPGAHVWRPCDTVETQVAWQSAVEYKNGPTALSFTRQGVPFMQRDDAAVRNIARG CCEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCHHHHHHHHC GYVLRDCEGTPEVILIATGSEVGVAAGACDRLTAEGRRVRLVSMPCSNIFDRQDAAYRES CCEEEECCCCCCEEEEECCCCCCCCCCCHHHHCCCCCEEEEEECCHHHHHCCCHHHHHHH VLPAAVEARVAVEAAASDFWWKYVGLKGRVVGMTTFGESAPGKVLFEHFGFTADNVAAVA HCHHHHHHHHHHHHHHHHHHHHEECCCCEEEEEEECCCCCCCHHHHHHCCCCHHHHHHHH KEVL HHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 7542800 [H]