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The map label for this gene is yggB [C]

Identifier: 78357607

GI number: 78357607

Start: 2583205

End: 2584056

Strand: Reverse

Name: yggB [C]

Synonym: Dde_2565

Alternate gene names: 78357607

Gene position: 2584056-2583205 (Counterclockwise)

Preceding gene: 78357609

Following gene: 78357601

Centisome position: 69.27

GC content: 57.04

Gene sequence:

>852_bases
ATGGATTACGCCAGACTGATGGAAGAGTACGGCGACATGATTATTGTATGGTTGGCGCGTAACGGGACAAATCTGCTCGT
GGCGCTGGTTATCGCGTTTGCCGGTGCATGGTTGAGCGGCAGGGTGGCCAACCTTGTGCGCAAGGGCATGGAACTGCGGG
GTATAGACAGGCTGCTCACCGGATTTATCCGCAATGTGATTTATTATGTGCTGCTTGTGGCGGTGCTTATCGCGGCGGCG
GGCCAGCTGGGTATAGACACCACATCCTTCCTTGCTCTGCTGGGTTCCATGGGTCTTGCTGTCGGTCTTGCCATCAAGGA
CAATCTGGCCAACTTTTCCAGCGGAATCATGCTTATTCTGTTCAGGCCGTTCACGTTGGGAGACTATGTGACCGTGGCCG
GCGTTTCGGGCACCGTGGACAAGCTGAGCCTGTCCACCACGCTGCTGCTGACCCCCGACAATCAGCGCATCATCGTGCCC
AACAGCAAAATCATGAGCGATGTCATAGTGAACGTGACGGGCAACCCCACCCGCCGTATGGACCTGACCTTCGGTGTGGG
CTACGGCGATGATCTGGCGCTGGCCAAAAAGGTTATCGAAGACGTTGTCAGGGCGCAGCCCGAACTGCTGACCGAACCGC
CGTGCACCATTGCCGTTGCCGAACTGGGGGACAGCTCTGTGAATCTGGTGGTAAGGCCCTGGGTTGCCACCGCCGATTAC
TGGACAGTGCGCTTCCGTCTTATCGAAGAAGTGAAAAAAGCGCTTGATGCCAATGGGATCAGCATCCCTTATCCGCAGCG
CGATGTGCATATTGTTCAGGCAGCTGATCAGGCTGCGGGCCACGGGGTCTAG

Upstream 100 bases:

>100_bases
ATGACCGGCTGAATGGGCTATGAAGGCTCAATGCACGTACCGGCCGTTCCGTGGCGGCGGGCTGTGCTGTGCAGCATTAT
ACCATTGAAGGAGTCTACTT

Downstream 100 bases:

>100_bases
CCGCGTCGGTTTGTAAAAAAAATGAAAAGCACGACCCGCTGCGCAGTGGCGGGCCGTGCTTTTTGAAAGAGAAAAAGCTG
TTCAGGGTTCGCAGAGCCGG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 283; Mature: 283

Protein sequence:

>283_residues
MDYARLMEEYGDMIIVWLARNGTNLLVALVIAFAGAWLSGRVANLVRKGMELRGIDRLLTGFIRNVIYYVLLVAVLIAAA
GQLGIDTTSFLALLGSMGLAVGLAIKDNLANFSSGIMLILFRPFTLGDYVTVAGVSGTVDKLSLSTTLLLTPDNQRIIVP
NSKIMSDVIVNVTGNPTRRMDLTFGVGYGDDLALAKKVIEDVVRAQPELLTEPPCTIAVAELGDSSVNLVVRPWVATADY
WTVRFRLIEEVKKALDANGISIPYPQRDVHIVQAADQAAGHGV

Sequences:

>Translated_283_residues
MDYARLMEEYGDMIIVWLARNGTNLLVALVIAFAGAWLSGRVANLVRKGMELRGIDRLLTGFIRNVIYYVLLVAVLIAAA
GQLGIDTTSFLALLGSMGLAVGLAIKDNLANFSSGIMLILFRPFTLGDYVTVAGVSGTVDKLSLSTTLLLTPDNQRIIVP
NSKIMSDVIVNVTGNPTRRMDLTFGVGYGDDLALAKKVIEDVVRAQPELLTEPPCTIAVAELGDSSVNLVVRPWVATADY
WTVRFRLIEEVKKALDANGISIPYPQRDVHIVQAADQAAGHGV
>Mature_283_residues
MDYARLMEEYGDMIIVWLARNGTNLLVALVIAFAGAWLSGRVANLVRKGMELRGIDRLLTGFIRNVIYYVLLVAVLIAAA
GQLGIDTTSFLALLGSMGLAVGLAIKDNLANFSSGIMLILFRPFTLGDYVTVAGVSGTVDKLSLSTTLLLTPDNQRIIVP
NSKIMSDVIVNVTGNPTRRMDLTFGVGYGDDLALAKKVIEDVVRAQPELLTEPPCTIAVAELGDSSVNLVVRPWVATADY
WTVRFRLIEEVKKALDANGISIPYPQRDVHIVQAADQAAGHGV

Specific function: Unknown

COG id: COG0668

COG function: function code M; Small-conductance mechanosensitive channel

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the mscS (TC 1.A.23) family [H]

Homologues:

Organism=Escherichia coli, GI1789291, Length=270, Percent_Identity=35.5555555555556, Blast_Score=190, Evalue=7e-50,
Organism=Escherichia coli, GI1786670, Length=214, Percent_Identity=25.7009345794392, Blast_Score=97, Evalue=1e-21,
Organism=Escherichia coli, GI1787591, Length=235, Percent_Identity=25.1063829787234, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI2367355, Length=209, Percent_Identity=21.5311004784689, Blast_Score=65, Evalue=4e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010920
- InterPro:   IPR011066
- InterPro:   IPR006685
- InterPro:   IPR006686
- InterPro:   IPR011014 [H]

Pfam domain/function: PF00924 MS_channel [H]

EC number: NA

Molecular weight: Translated: 30557; Mature: 30557

Theoretical pI: Translated: 5.34; Mature: 5.34

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDYARLMEEYGDMIIVWLARNGTNLLVALVIAFAGAWLSGRVANLVRKGMELRGIDRLLT
CCHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHHCCHHHHHHHHHHHCCCHHHHHHHHHH
GFIRNVIYYVLLVAVLIAAAGQLGIDTTSFLALLGSMGLAVGLAIKDNLANFSSGIMLIL
HHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHEEEEEHHCHHCCCCCEEEEE
FRPFTLGDYVTVAGVSGTVDKLSLSTTLLLTPDNQRIIVPNSKIMSDVIVNVTGNPTRRM
EECCCCCCEEEEECCCCCHHEEEEEEEEEEECCCCEEEECCHHHHHHEEEECCCCCCEEE
DLTFGVGYGDDLALAKKVIEDVVRAQPELLTEPPCTIAVAELGDSSVNLVVRPWVATADY
EEEEECCCCCHHHHHHHHHHHHHHCCHHHCCCCCCEEEEEECCCCCCEEEEECCEECCCH
WTVRFRLIEEVKKALDANGISIPYPQRDVHIVQAADQAAGHGV
HHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECHHHCCCCC
>Mature Secondary Structure
MDYARLMEEYGDMIIVWLARNGTNLLVALVIAFAGAWLSGRVANLVRKGMELRGIDRLLT
CCHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHHCCHHHHHHHHHHHCCCHHHHHHHHHH
GFIRNVIYYVLLVAVLIAAAGQLGIDTTSFLALLGSMGLAVGLAIKDNLANFSSGIMLIL
HHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHEEEEEHHCHHCCCCCEEEEE
FRPFTLGDYVTVAGVSGTVDKLSLSTTLLLTPDNQRIIVPNSKIMSDVIVNVTGNPTRRM
EECCCCCCEEEEECCCCCHHEEEEEEEEEEECCCCEEEECCHHHHHHEEEECCCCCCEEE
DLTFGVGYGDDLALAKKVIEDVVRAQPELLTEPPCTIAVAELGDSSVNLVVRPWVATADY
EEEEECCCCCHHHHHHHHHHHHHHCCHHHCCCCCCEEEEEECCCCCCEEEEECCEECCCH
WTVRFRLIEEVKKALDANGISIPYPQRDVHIVQAADQAAGHGV
HHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231 [H]