Click here to switch to the map view.

The map label for this gene is ybbD [H]

Identifier: 78357601

GI number: 78357601

Start: 2577092

End: 2578288

Strand: Reverse

Name: ybbD [H]

Synonym: Dde_2559

Alternate gene names: 78357601

Gene position: 2578288-2577092 (Counterclockwise)

Preceding gene: 78357607

Following gene: 78357597

Centisome position: 69.12

GC content: 60.23

Gene sequence:

>1197_bases
ATGAAGATAATTTCAAAGCGCCTGTGCAGAAAGGTGCTGCTGGCGGCAGTGCTGACACTGATATTTGCTCACGGGACAGC
ACGCGCTGCTGCCGCCCGCCCGTCAGCCGATGAAAGCGCCGCGCTGCGCAGCATGGCAGGGCAACTGCTGCTTGTGGGAT
TCAGGGGAGAATCCCTGTCCGGCGCCGATTCAGTAGTGCGCGATGTCACCCACTATAATCTGGGCGGAGTCATTCTGTTT
GACCGTGACGTCGCACTGGGCAGCGACCGGCGCAATATCCGGTCTGTCCGGCAACTGGCGGCACTGACAGCTGCTTTGCA
GAAGGCGGCACAGACGCCGCTTTTTGTGGCGGTTGATCAGGAAGGAGGCAGGGTTGCCCGTCTGTCGCCCCGTCATGGTT
TTGCGGCATTGCCTTCAGCGCAGGAAACGGGTGCGGCAGCCACTACGGCCGCTTCTGCGGATGCCGGAAGCCGTGCGGGA
GCCATGTTGCATGCTGTCGGAGTGAATCTGAATTTTGCGCCTGTGGTCGATGTTAACGTGCGGCCCGACAACCCTGTCAT
CGGCAGGGCGGGACGCAGCTTTTCGGCTGATTCTGAAGCCGTGGCACGGCATGCGCAGGCTTTTTTGCAGGGTATGGCGT
CTCATGGGGTGCTGGGCTGTGTTAAGCATTTTCCCGGTCACGGCAGCTCGGCCGCTGATTCACATCTGGGGGTGGCGGAT
ATAAGCGCTTCGTGGAACGAAAACGAGCTTGTGCCGTACCGGCGTCTGCTGGACGGCGGTCATGTGCAGATGATCATGAC
AGGCCATCTTTTCAACAGCCGGCTGGATCCCGATCATCCCGCCACGCTGTCCCGTGCCGTGATCACCGGTCTGCTGCGCG
GCAGACTGGGGTTCGGGGGAGTGGTGGTTTCCGATGACATGCAGATGAAAGCCATAACGGACCGTTACGGGCTGGAACAG
GCCGTGGCGCTGGCACTGAATGCCGGAGTCGATATTCTGCTGTTCGGCAACAATCTGACCTACGATGCCGATATAGTGCC
TGAAGTAGTCGATATGATTGAGTCGCTGGTGGAGCGGGGAGTGGTTCCGCGCAGTCGTATAGAGGAATCCTTTGCCCGTG
TGCTCCGGCTCAAGGAAAGCGCCGGTCTGCTGCCCGCACGGGTGCGCACGGTGCAGGAGACCGCCGGAAATATTTGA

Upstream 100 bases:

>100_bases
GAATGCATTGTGCGGCAAGGCCGGCTGTATTACTGTGGCTGCCGCGTGTCTGCGGGCATGTTTCAGCCAGATGATAACGG
TGTATACAAGAGGAATATAT

Downstream 100 bases:

>100_bases
GCAGTCAGGAACGTGCGGCGGAAAAGCGCGGCTGTTCCGTGAACAGTTTTTCCATTTGTGCGGCGGGCAGCGGCGGGGCA
AATAAGAACCCCTGACCGGC

Product: Beta-N-acetylhexosaminidase

Products: N-acetylglucosamin; anhydro-N-acetylmuramic acid [C]

Alternate protein names: ORF1 [H]

Number of amino acids: Translated: 398; Mature: 398

Protein sequence:

>398_residues
MKIISKRLCRKVLLAAVLTLIFAHGTARAAAARPSADESAALRSMAGQLLLVGFRGESLSGADSVVRDVTHYNLGGVILF
DRDVALGSDRRNIRSVRQLAALTAALQKAAQTPLFVAVDQEGGRVARLSPRHGFAALPSAQETGAAATTAASADAGSRAG
AMLHAVGVNLNFAPVVDVNVRPDNPVIGRAGRSFSADSEAVARHAQAFLQGMASHGVLGCVKHFPGHGSSAADSHLGVAD
ISASWNENELVPYRRLLDGGHVQMIMTGHLFNSRLDPDHPATLSRAVITGLLRGRLGFGGVVVSDDMQMKAITDRYGLEQ
AVALALNAGVDILLFGNNLTYDADIVPEVVDMIESLVERGVVPRSRIEESFARVLRLKESAGLLPARVRTVQETAGNI

Sequences:

>Translated_398_residues
MKIISKRLCRKVLLAAVLTLIFAHGTARAAAARPSADESAALRSMAGQLLLVGFRGESLSGADSVVRDVTHYNLGGVILF
DRDVALGSDRRNIRSVRQLAALTAALQKAAQTPLFVAVDQEGGRVARLSPRHGFAALPSAQETGAAATTAASADAGSRAG
AMLHAVGVNLNFAPVVDVNVRPDNPVIGRAGRSFSADSEAVARHAQAFLQGMASHGVLGCVKHFPGHGSSAADSHLGVAD
ISASWNENELVPYRRLLDGGHVQMIMTGHLFNSRLDPDHPATLSRAVITGLLRGRLGFGGVVVSDDMQMKAITDRYGLEQ
AVALALNAGVDILLFGNNLTYDADIVPEVVDMIESLVERGVVPRSRIEESFARVLRLKESAGLLPARVRTVQETAGNI
>Mature_398_residues
MKIISKRLCRKVLLAAVLTLIFAHGTARAAAARPSADESAALRSMAGQLLLVGFRGESLSGADSVVRDVTHYNLGGVILF
DRDVALGSDRRNIRSVRQLAALTAALQKAAQTPLFVAVDQEGGRVARLSPRHGFAALPSAQETGAAATTAASADAGSRAG
AMLHAVGVNLNFAPVVDVNVRPDNPVIGRAGRSFSADSEAVARHAQAFLQGMASHGVLGCVKHFPGHGSSAADSHLGVAD
ISASWNENELVPYRRLLDGGHVQMIMTGHLFNSRLDPDHPATLSRAVITGLLRGRLGFGGVVVSDDMQMKAITDRYGLEQ
AVALALNAGVDILLFGNNLTYDADIVPEVVDMIESLVERGVVPRSRIEESFARVLRLKESAGLLPARVRTVQETAGNI

Specific function: Hydrolyses the beta-1,4-glycosidic bond between N-acetylglucosamine and anhydro-N-acetylmuramic acid in cell wall degradation products following their importation into the cell during the process for recycling cell wall muropeptides [C]

COG id: COG1472

COG function: function code G; Beta-glucosidase-related glycosidases

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyl hydrolase 3 family [H]

Homologues:

Organism=Escherichia coli, GI1787350, Length=319, Percent_Identity=32.6018808777429, Blast_Score=123, Evalue=2e-29,
Organism=Escherichia coli, GI1788453, Length=309, Percent_Identity=23.9482200647249, Blast_Score=69, Evalue=5e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019800
- InterPro:   IPR002772
- InterPro:   IPR001764
- InterPro:   IPR017853 [H]

Pfam domain/function: PF00933 Glyco_hydro_3; PF01915 Glyco_hydro_3_C [H]

EC number: NA

Molecular weight: Translated: 41964; Mature: 41964

Theoretical pI: Translated: 9.17; Mature: 9.17

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKIISKRLCRKVLLAAVLTLIFAHGTARAAAARPSADESAALRSMAGQLLLVGFRGESLS
CCHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCCHHHHHHHHHCCCEEEEEECCCCCC
GADSVVRDVTHYNLGGVILFDRDVALGSDRRNIRSVRQLAALTAALQKAAQTPLFVAVDQ
CHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEC
EGGRVARLSPRHGFAALPSAQETGAAATTAASADAGSRAGAMLHAVGVNLNFAPVVDVNV
CCCEEEEECCCCCCEECCCCHHCCCHHHHCCCCCCCCHHCCEEEEEECCCCEEEEEEEEE
RPDNPVIGRAGRSFSADSEAVARHAQAFLQGMASHGVLGCVKHFPGHGSSAADSHLGVAD
CCCCCCEECCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCCCCCCCCCCEEE
ISASWNENELVPYRRLLDGGHVQMIMTGHLFNSRLDPDHPATLSRAVITGLLRGRLGFGG
CCCCCCCCCCCHHHHHHCCCCEEEEEEEHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCC
VVVSDDMQMKAITDRYGLEQAVALALNAGVDILLFGNNLTYDADIVPEVVDMIESLVERG
EEEECCCHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHCC
VVPRSRIEESFARVLRLKESAGLLPARVRTVQETAGNI
CCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCC
>Mature Secondary Structure
MKIISKRLCRKVLLAAVLTLIFAHGTARAAAARPSADESAALRSMAGQLLLVGFRGESLS
CCHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCCHHHHHHHHHCCCEEEEEECCCCCC
GADSVVRDVTHYNLGGVILFDRDVALGSDRRNIRSVRQLAALTAALQKAAQTPLFVAVDQ
CHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEC
EGGRVARLSPRHGFAALPSAQETGAAATTAASADAGSRAGAMLHAVGVNLNFAPVVDVNV
CCCEEEEECCCCCCEECCCCHHCCCHHHHCCCCCCCCHHCCEEEEEECCCCEEEEEEEEE
RPDNPVIGRAGRSFSADSEAVARHAQAFLQGMASHGVLGCVKHFPGHGSSAADSHLGVAD
CCCCCCEECCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCCCCCCCCCCEEE
ISASWNENELVPYRRLLDGGHVQMIMTGHLFNSRLDPDHPATLSRAVITGLLRGRLGFGG
CCCCCCCCCCCHHHHHHCCCCEEEEEEEHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCC
VVVSDDMQMKAITDRYGLEQAVALALNAGVDILLFGNNLTYDADIVPEVVDMIESLVERG
EEEECCCHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHCC
VVPRSRIEESFARVLRLKESAGLLPARVRTVQETAGNI
CCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: Cell Wall [C]

Specific reaction: Cell Wall = N-acetylglucosamin + anhydro-N-acetylmuramic acid [C]

General reaction: Hydrolyse [C]

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8011666; 9274029; 9384377 [H]