| Definition | Desulfovibrio desulfuricans subsp. desulfuricans str. G20 chromosome, complete genome. |
|---|---|
| Accession | NC_007519 |
| Length | 3,730,232 |
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The map label for this gene is hsdR [H]
Identifier: 78357542
GI number: 78357542
Start: 2523135
End: 2525516
Strand: Reverse
Name: hsdR [H]
Synonym: Dde_2499
Alternate gene names: 78357542
Gene position: 2525516-2523135 (Counterclockwise)
Preceding gene: 78357543
Following gene: 78357541
Centisome position: 67.7
GC content: 55.58
Gene sequence:
>2382_bases ATGAATAAAAAACAACTTTCCGAGCGCGATATCTGCACGAAGTACATCACTCCTGCCCTTGAGAAGGCTGGCTGGGATGT TACCACTCAGGTCCGTGAAGAGTTTCCTCTCACCAAGGGACGCATCATCGTGCGTGGCAAGCTGCATACCCGCGCCAAGC ACAAACGCGCCGATTATGTCCTGTTTTACAAGCCGAACATCCCCATTGCCATTATCGAGGCCAAGGACAACAACCACACG GTTGGCGACGGCATGCAACAGGCGTTGGGCTACGCCGACATGCTGCAAGTGCCTTATATATTTAGCTCCAATGGCGACGG TTTTCTTTTCCACAACAAAATTGCTCTGGACGGCATTGTCGAGCGTGAACTTGCTCTCCACGAATTCCCCGCTGCGGAGA TGCTGTGGCAATGGTGGGTACAGCACCGTGGCCTGAACGATCAGCAGAATGCACTGGTCACGCAGGATTATTTCAGCGAC GGCAGCGATAAAAGTCCACGCTATTACCAGTTGCTGGCCATCAACAAGACCATCGAGGCGATAGCACGGGGCCAGAATCG CATTCTACTGGTGATGGCCACCGGTACCGGCAAGACCTTCACCGCCTTCCAGATCATTTGGCGGCTGTGGAAGTCCAAGG CGAAAAAACGCATCCTGTTTCTTGCCGACCGTAACATCCTGGTCGACCAGACCATGACCAACGACTTCAAGCCGTTCGGT TCGGCCATGACCAAGATCCAAAAGCGGCAGGCCAACAAGTCCTACGAGATTTACCTTTCCCTATATCAAGCCGTTACCGG CAACGAGGAAGAGAAAAACATCTACCGGCAGTTCAGCCCCGATTTTTTCGACCTCATCATCATTGATGAATGCCATCGGG GCAGTGCTGCCGCCGATTCGGCCTGGCGTGAAATTCTCGAATATTTCACTTCCGCTACCCAGATCGGCCTTACCGCCACG CCCAAGGAGACCAAAGAAGTCTCCAACATCGACTACTTTGGCGACCCCATCTATACCTACAGCCTCCGGCAGGGCATTGA CGACGGTTTCCTTGCTCCCTACAAGGTCGTGCGCATCGATCTTGACCGCGATTTAACAGGTTGGCGGCCCGACAAGGGCA TGATCGACAAGTACGGCAACGAAATCGAAGACCGTATCTACAACCAGAAAGATTTCGACAAGACCCTTGTCCTTGAACAG CGTACCCGGTTGGTGGCAAAAAAGATCACCGAGTTCCTCAGACAAACCAACCGCTTCGACAAAGCCATCGTCTTCTGTGA AAACATCGACCATGCCGAACGCATGCGTCAGGCCCTGGTCAATGAAAACGCCGACCTGGTGGCGCAGAACAGCAAATACG TCATGCGCATCACCGGCGACAACGAGGAAGGCAAGGCCGAACTGGACAACTTCATCTTCCCGGAGAGCAAATACCCGGTT ATTGCCACCACCTCCAAGCTGATGACTACCGGTGTCGATGCACAGACCTGTAAACTCATTGTGCTCGACCAGCGCATTCA GTCCATGACCGAGTTCAAGCAGATCATCGGGCGCGGCACCCGCATCAACGAAGATTACGGCAAGTACTACTTCACCATCA TCGACTTCAAGAAGGCCACCGAGCTGTTTGCCGACCCTGATTTCGACGGTGACCCGGTGCAGATTTACGAACCCAGCGGG GATCAGTCACCGGTTCCGCCGGATGTTCCTGTTGATCCTGAAGTTGACGGTGGCGTCACCTATCCGGAACCCGGAGAAGA CCAGGGTTGGACCGGCGTCGCTGAACCCGGCCCAGGTGAGGAAGGCGGCATTCGCCGTTACGTTGTGGCCAATGTCGAGG TCAAGGTCGCCGCCGAACGCGTCCAGTATTTCGACGCCAACGGCAAACTGATCACCGAATCCCTCAAAGATTACACCCGC AAGGCCCTGGCCAGGGAGTACGCCACCCTCGACGATTTTCTCCGCCGTTGGAGCAGCACCGAGAAGAAGCAGGCCATCAT CGACGAACTGTCAGAACAGGGCGTGTTCTTCGATGCCCTTGCCGATGAGATCGGGCGGCAATCCGGAAAAGCCTTCGACC CCTTCGATCTGGTCTGCCATGTCGCCTGGGATATGCCGCCGCTCACCCGCAAGGAGCGGGCGGAACAGGTGAAGAAACGC AACTACTTCACCCGCTACGGAGAGCAGGCCCGCCGGGTGCTGGAGGCCCTGCTCGACAAGTATGCCGATGAAGGCGTGGC CCACATCGAAGAGACGCAGATTCTCACCATTGCCCCCTTTACCGAATTCGGCACCCCGCTGGAAATCATCCGCGCCTTTG GTGGGCTGGATCAGTATCAGCAGGCTGTCAACGAACTGGAACAGGCCCTCTATAGCGCCTGA
Upstream 100 bases:
>100_bases TCAACCGCTGGGAAAACAGCAAGACGGTTCCCTTCAAGCTGGCGAGAAGGCAATTCGAAGCTTTTTGTGAGCGGATGAAA AAACAAGGGAAGTTGGCCTG
Downstream 100 bases:
>100_bases CAAAAAGAACTGGAGATAAAACAACCATGTCACTCACCACCCTGATCAAAGCCATTCAGGACATCATGCGCAAGGATGTC GGCGTCGATGGCGACGCTCA
Product: DEAD/DEAH box helicase-like
Products: NA
Alternate protein names: R.EcoAI [H]
Number of amino acids: Translated: 793; Mature: 793
Protein sequence:
>793_residues MNKKQLSERDICTKYITPALEKAGWDVTTQVREEFPLTKGRIIVRGKLHTRAKHKRADYVLFYKPNIPIAIIEAKDNNHT VGDGMQQALGYADMLQVPYIFSSNGDGFLFHNKIALDGIVERELALHEFPAAEMLWQWWVQHRGLNDQQNALVTQDYFSD GSDKSPRYYQLLAINKTIEAIARGQNRILLVMATGTGKTFTAFQIIWRLWKSKAKKRILFLADRNILVDQTMTNDFKPFG SAMTKIQKRQANKSYEIYLSLYQAVTGNEEEKNIYRQFSPDFFDLIIIDECHRGSAAADSAWREILEYFTSATQIGLTAT PKETKEVSNIDYFGDPIYTYSLRQGIDDGFLAPYKVVRIDLDRDLTGWRPDKGMIDKYGNEIEDRIYNQKDFDKTLVLEQ RTRLVAKKITEFLRQTNRFDKAIVFCENIDHAERMRQALVNENADLVAQNSKYVMRITGDNEEGKAELDNFIFPESKYPV IATTSKLMTTGVDAQTCKLIVLDQRIQSMTEFKQIIGRGTRINEDYGKYYFTIIDFKKATELFADPDFDGDPVQIYEPSG DQSPVPPDVPVDPEVDGGVTYPEPGEDQGWTGVAEPGPGEEGGIRRYVVANVEVKVAAERVQYFDANGKLITESLKDYTR KALAREYATLDDFLRRWSSTEKKQAIIDELSEQGVFFDALADEIGRQSGKAFDPFDLVCHVAWDMPPLTRKERAEQVKKR NYFTRYGEQARRVLEALLDKYADEGVAHIEETQILTIAPFTEFGTPLEIIRAFGGLDQYQQAVNELEQALYSA
Sequences:
>Translated_793_residues MNKKQLSERDICTKYITPALEKAGWDVTTQVREEFPLTKGRIIVRGKLHTRAKHKRADYVLFYKPNIPIAIIEAKDNNHT VGDGMQQALGYADMLQVPYIFSSNGDGFLFHNKIALDGIVERELALHEFPAAEMLWQWWVQHRGLNDQQNALVTQDYFSD GSDKSPRYYQLLAINKTIEAIARGQNRILLVMATGTGKTFTAFQIIWRLWKSKAKKRILFLADRNILVDQTMTNDFKPFG SAMTKIQKRQANKSYEIYLSLYQAVTGNEEEKNIYRQFSPDFFDLIIIDECHRGSAAADSAWREILEYFTSATQIGLTAT PKETKEVSNIDYFGDPIYTYSLRQGIDDGFLAPYKVVRIDLDRDLTGWRPDKGMIDKYGNEIEDRIYNQKDFDKTLVLEQ RTRLVAKKITEFLRQTNRFDKAIVFCENIDHAERMRQALVNENADLVAQNSKYVMRITGDNEEGKAELDNFIFPESKYPV IATTSKLMTTGVDAQTCKLIVLDQRIQSMTEFKQIIGRGTRINEDYGKYYFTIIDFKKATELFADPDFDGDPVQIYEPSG DQSPVPPDVPVDPEVDGGVTYPEPGEDQGWTGVAEPGPGEEGGIRRYVVANVEVKVAAERVQYFDANGKLITESLKDYTR KALAREYATLDDFLRRWSSTEKKQAIIDELSEQGVFFDALADEIGRQSGKAFDPFDLVCHVAWDMPPLTRKERAEQVKKR NYFTRYGEQARRVLEALLDKYADEGVAHIEETQILTIAPFTEFGTPLEIIRAFGGLDQYQQAVNELEQALYSA >Mature_793_residues MNKKQLSERDICTKYITPALEKAGWDVTTQVREEFPLTKGRIIVRGKLHTRAKHKRADYVLFYKPNIPIAIIEAKDNNHT VGDGMQQALGYADMLQVPYIFSSNGDGFLFHNKIALDGIVERELALHEFPAAEMLWQWWVQHRGLNDQQNALVTQDYFSD GSDKSPRYYQLLAINKTIEAIARGQNRILLVMATGTGKTFTAFQIIWRLWKSKAKKRILFLADRNILVDQTMTNDFKPFG SAMTKIQKRQANKSYEIYLSLYQAVTGNEEEKNIYRQFSPDFFDLIIIDECHRGSAAADSAWREILEYFTSATQIGLTAT PKETKEVSNIDYFGDPIYTYSLRQGIDDGFLAPYKVVRIDLDRDLTGWRPDKGMIDKYGNEIEDRIYNQKDFDKTLVLEQ RTRLVAKKITEFLRQTNRFDKAIVFCENIDHAERMRQALVNENADLVAQNSKYVMRITGDNEEGKAELDNFIFPESKYPV IATTSKLMTTGVDAQTCKLIVLDQRIQSMTEFKQIIGRGTRINEDYGKYYFTIIDFKKATELFADPDFDGDPVQIYEPSG DQSPVPPDVPVDPEVDGGVTYPEPGEDQGWTGVAEPGPGEEGGIRRYVVANVEVKVAAERVQYFDANGKLITESLKDYTR KALAREYATLDDFLRRWSSTEKKQAIIDELSEQGVFFDALADEIGRQSGKAFDPFDLVCHVAWDMPPLTRKERAEQVKKR NYFTRYGEQARRVLEALLDKYADEGVAHIEETQILTIAPFTEFGTPLEIIRAFGGLDQYQQAVNELEQALYSA
Specific function: The EcoAI enzyme recognizes 5'-GAGN(7)GTCA-3'. Subunit R is required for both nuclease and ATPase activities, but not for modification [H]
COG id: COG4096
COG function: function code V; Type I site-specific restriction-modification system, R (restriction) subunit and related helicases
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 helicase C-terminal domain [H]
Homologues:
Organism=Escherichia coli, GI226510991, Length=575, Percent_Identity=28.1739130434783, Blast_Score=155, Evalue=9e-39, Organism=Escherichia coli, GI1788511, Length=428, Percent_Identity=25.9345794392523, Blast_Score=89, Evalue=8e-19,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR014001 - InterPro: IPR001650 - InterPro: IPR014021 - InterPro: IPR006935 - InterPro: IPR013670 - InterPro: IPR007409 [H]
Pfam domain/function: PF08463 EcoEI_R_C; PF04313 HSDR_N; PF04851 ResIII [H]
EC number: =3.1.21.3 [H]
Molecular weight: Translated: 90691; Mature: 90691
Theoretical pI: Translated: 5.04; Mature: 5.04
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNKKQLSERDICTKYITPALEKAGWDVTTQVREEFPLTKGRIIVRGKLHTRAKHKRADYV CCCHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCEEEEEECHHHHHHHCCCCEE LFYKPNIPIAIIEAKDNNHTVGDGMQQALGYADMLQVPYIFSSNGDGFLFHNKIALDGIV EEECCCCCEEEEEECCCCCCCHHHHHHHHCHHHHHHCCEEEECCCCEEEEECCCHHHHHH ERELALHEFPAAEMLWQWWVQHRGLNDQQNALVTQDYFSDGSDKSPRYYQLLAINKTIEA HHHHHHHHCCHHHHHHHHHHHHCCCCCHHCCEEEHHHHCCCCCCCCCEEEEEEEHHHHHH IARGQNRILLVMATGTGKTFTAFQIIWRLWKSKAKKRILFLADRNILVDQTMTNDFKPFG HHCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHCEEEEEECCCEEEECHHCCCCCHHH SAMTKIQKRQANKSYEIYLSLYQAVTGNEEEKNIYRQFSPDFFDLIIIDECHRGSAAADS HHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHCCCCEEEEEEEECCCCCCCHHHH AWREILEYFTSATQIGLTATPKETKEVSNIDYFGDPIYTYSLRQGIDDGFLAPYKVVRID HHHHHHHHHHHHHHCCEECCCHHHHHHCCCCCCCCCEEEEHHHCCCCCCCCCCEEEEEEE LDRDLTGWRPDKGMIDKYGNEIEDRIYNQKDFDKTLVLEQRTRLVAKKITEFLRQTNRFD ECCCCCCCCCCCCHHHHHCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCC KAIVFCENIDHAERMRQALVNENADLVAQNSKYVMRITGDNEEGKAELDNFIFPESKYPV EEEEEECCCCHHHHHHHHHHCCCCCEEEECCCEEEEEECCCCCCHHHHHHCCCCCCCCCE IATTSKLMTTGVDAQTCKLIVLDQRIQSMTEFKQIIGRGTRINEDYGKYYFTIIDFKKAT EEECHHHHHCCCCHHHEEEEEHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEEHHHHH ELFADPDFDGDPVQIYEPSGDQSPVPPDVPVDPEVDGGVTYPEPGEDQGWTGVAEPGPGE HHHCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC EGGIRRYVVANVEVKVAAERVQYFDANGKLITESLKDYTRKALAREYATLDDFLRRWSST CCCEEEEEEEEEEEEEEHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC EKKQAIIDELSEQGVFFDALADEIGRQSGKAFDPFDLVCHVAWDMPPLTRKERAEQVKKR HHHHHHHHHHHHCCEEHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHH NYFTRYGEQARRVLEALLDKYADEGVAHIEETQILTIAPFTEFGTPLEIIRAFGGLDQYQ HHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCEEEEEECCHHCCCHHHHHHHHCCHHHHH QAVNELEQALYSA HHHHHHHHHHHCC >Mature Secondary Structure MNKKQLSERDICTKYITPALEKAGWDVTTQVREEFPLTKGRIIVRGKLHTRAKHKRADYV CCCHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCEEEEEECHHHHHHHCCCCEE LFYKPNIPIAIIEAKDNNHTVGDGMQQALGYADMLQVPYIFSSNGDGFLFHNKIALDGIV EEECCCCCEEEEEECCCCCCCHHHHHHHHCHHHHHHCCEEEECCCCEEEEECCCHHHHHH ERELALHEFPAAEMLWQWWVQHRGLNDQQNALVTQDYFSDGSDKSPRYYQLLAINKTIEA HHHHHHHHCCHHHHHHHHHHHHCCCCCHHCCEEEHHHHCCCCCCCCCEEEEEEEHHHHHH IARGQNRILLVMATGTGKTFTAFQIIWRLWKSKAKKRILFLADRNILVDQTMTNDFKPFG HHCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHCEEEEEECCCEEEECHHCCCCCHHH SAMTKIQKRQANKSYEIYLSLYQAVTGNEEEKNIYRQFSPDFFDLIIIDECHRGSAAADS HHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHCCCCEEEEEEEECCCCCCCHHHH AWREILEYFTSATQIGLTATPKETKEVSNIDYFGDPIYTYSLRQGIDDGFLAPYKVVRID HHHHHHHHHHHHHHCCEECCCHHHHHHCCCCCCCCCEEEEHHHCCCCCCCCCCEEEEEEE LDRDLTGWRPDKGMIDKYGNEIEDRIYNQKDFDKTLVLEQRTRLVAKKITEFLRQTNRFD ECCCCCCCCCCCCHHHHHCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCC KAIVFCENIDHAERMRQALVNENADLVAQNSKYVMRITGDNEEGKAELDNFIFPESKYPV EEEEEECCCCHHHHHHHHHHCCCCCEEEECCCEEEEEECCCCCCHHHHHHCCCCCCCCCE IATTSKLMTTGVDAQTCKLIVLDQRIQSMTEFKQIIGRGTRINEDYGKYYFTIIDFKKAT EEECHHHHHCCCCHHHEEEEEHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEEHHHHH ELFADPDFDGDPVQIYEPSGDQSPVPPDVPVDPEVDGGVTYPEPGEDQGWTGVAEPGPGE HHHCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC EGGIRRYVVANVEVKVAAERVQYFDANGKLITESLKDYTRKALAREYATLDDFLRRWSST CCCEEEEEEEEEEEEEEHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC EKKQAIIDELSEQGVFFDALADEIGRQSGKAFDPFDLVCHVAWDMPPLTRKERAEQVKKR HHHHHHHHHHHHCCEEHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHH NYFTRYGEQARRVLEALLDKYADEGVAHIEETQILTIAPFTEFGTPLEIIRAFGGLDQYQ HHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCEEEEEECCHHCCCHHHHHHHHCCHHHHH QAVNELEQALYSA HHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8412658 [H]