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The map label for this gene is radC [C]

Identifier: 78357485

GI number: 78357485

Start: 2463476

End: 2464153

Strand: Direct

Name: radC [C]

Synonym: Dde_2442

Alternate gene names: 78357485

Gene position: 2463476-2464153 (Clockwise)

Preceding gene: 78357484

Following gene: 78357486

Centisome position: 66.04

GC content: 60.47

Gene sequence:

>678_bases
ATGGTCAACGAACCACATTATCATGGTCATCGGCAGCGCCTACGCGAGAAGCTGAAAAAAGACTCCACCCAGCTGGCCGA
CTATGAAATTCTGGAACTGATTCTGGGTATGGTACTGCGCAGGCAGGACACCAAGCCGCTTGCCAAGCGGCTGCTCGGGC
GGTTCGGTTCGCTGCGGGGCGTGCTGGATGCCCGGCCGCAGGAGCTTATGGCGGAAAAAGGGGTCGGTCCGGCCATGGAA
AGTTTCTGGCTGCTGCTGCGCGAGTTCATAGCGCGCTATGCCGAAGCCCCCATGAGAGAACGGACACTGCTGGTTTCTTC
GCGCGCCGTGGCAGACATGGCCAGAACGCGTCTGGCAGGCTGCCCCCATGAGGAAGTGTGGGTGGCCTACATGGACAGGC
AGAACAGACTGCTTGCATGGGAACGCGCCACAAGAGGCACGGTAAACGCATCTGCCATTTACCCGCGCGACCTGATGGAA
GCGGCATTGCGCTACAAGGCAAGCGGGCTGATACTGGTGCACAACCACCCCGGCGGCAGTGCGCGGCCCTCCGCACCGGA
TGTGGAAGTGACCAAACTGGTGGCGCGCAGCGCCGCATCGCTGGGCATGACGCTGGTAGACCATGTCATTGTGACCGAGG
AAGGGCATTACAGTCTCAAGGAAGACGGGCTTTTCTAA

Upstream 100 bases:

>100_bases
CTTCCTGTCGCAGGATTTTTCTCTTTTTCAGACGCAAATCACCCTTTTTTACACTGTAAAGCGGCTTTACAGCCTTGCCA
CCGGCGGGTAACTGCTTATT

Downstream 100 bases:

>100_bases
ATCCGGCAGCACAGCCGCCGGCACGGACAAAGGACACGCCATGAACCGCATAGCATGTACGGTGCACGGCAGAGTGCAGG
GAGTGGGCTTCCGCTACTGG

Product: DNA repair protein RadC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 225; Mature: 225

Protein sequence:

>225_residues
MVNEPHYHGHRQRLREKLKKDSTQLADYEILELILGMVLRRQDTKPLAKRLLGRFGSLRGVLDARPQELMAEKGVGPAME
SFWLLLREFIARYAEAPMRERTLLVSSRAVADMARTRLAGCPHEEVWVAYMDRQNRLLAWERATRGTVNASAIYPRDLME
AALRYKASGLILVHNHPGGSARPSAPDVEVTKLVARSAASLGMTLVDHVIVTEEGHYSLKEDGLF

Sequences:

>Translated_225_residues
MVNEPHYHGHRQRLREKLKKDSTQLADYEILELILGMVLRRQDTKPLAKRLLGRFGSLRGVLDARPQELMAEKGVGPAME
SFWLLLREFIARYAEAPMRERTLLVSSRAVADMARTRLAGCPHEEVWVAYMDRQNRLLAWERATRGTVNASAIYPRDLME
AALRYKASGLILVHNHPGGSARPSAPDVEVTKLVARSAASLGMTLVDHVIVTEEGHYSLKEDGLF
>Mature_225_residues
MVNEPHYHGHRQRLREKLKKDSTQLADYEILELILGMVLRRQDTKPLAKRLLGRFGSLRGVLDARPQELMAEKGVGPAME
SFWLLLREFIARYAEAPMRERTLLVSSRAVADMARTRLAGCPHEEVWVAYMDRQNRLLAWERATRGTVNASAIYPRDLME
AALRYKASGLILVHNHPGGSARPSAPDVEVTKLVARSAASLGMTLVDHVIVTEEGHYSLKEDGLF

Specific function: Involved In DNA Repair. [C]

COG id: COG2003

COG function: function code L; DNA repair proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0758 family [H]

Homologues:

Organism=Escherichia coli, GI87082300, Length=210, Percent_Identity=32.8571428571429, Blast_Score=119, Evalue=2e-28,
Organism=Escherichia coli, GI2367100, Length=122, Percent_Identity=35.2459016393443, Blast_Score=86, Evalue=2e-18,
Organism=Escherichia coli, GI1788997, Length=122, Percent_Identity=31.9672131147541, Blast_Score=85, Evalue=3e-18,
Organism=Escherichia coli, GI1788312, Length=122, Percent_Identity=32.7868852459016, Blast_Score=81, Evalue=7e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010994
- InterPro:   IPR001405
- InterPro:   IPR020891 [H]

Pfam domain/function: PF04002 DUF2466 [H]

EC number: NA

Molecular weight: Translated: 25382; Mature: 25382

Theoretical pI: Translated: 9.78; Mature: 9.78

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVNEPHYHGHRQRLREKLKKDSTQLADYEILELILGMVLRRQDTKPLAKRLLGRFGSLRG
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
VLDARPQELMAEKGVGPAMESFWLLLREFIARYAEAPMRERTLLVSSRAVADMARTRLAG
HHCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCC
CPHEEVWVAYMDRQNRLLAWERATRGTVNASAIYPRDLMEAALRYKASGLILVHNHPGGS
CCCHHHHHHEECCCCCEEEHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEECCCCCC
ARPSAPDVEVTKLVARSAASLGMTLVDHVIVTEEGHYSLKEDGLF
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCCCCCC
>Mature Secondary Structure
MVNEPHYHGHRQRLREKLKKDSTQLADYEILELILGMVLRRQDTKPLAKRLLGRFGSLRG
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
VLDARPQELMAEKGVGPAMESFWLLLREFIARYAEAPMRERTLLVSSRAVADMARTRLAG
HHCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCC
CPHEEVWVAYMDRQNRLLAWERATRGTVNASAIYPRDLMEAALRYKASGLILVHNHPGGS
CCCHHHHHHEECCCCCEEEHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEECCCCCC
ARPSAPDVEVTKLVARSAASLGMTLVDHVIVTEEGHYSLKEDGLF
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA