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The map label for this gene is rimN [H]

Identifier: 78357332

GI number: 78357332

Start: 2311407

End: 2312039

Strand: Reverse

Name: rimN [H]

Synonym: Dde_2289

Alternate gene names: 78357332

Gene position: 2312039-2311407 (Counterclockwise)

Preceding gene: 78357336

Following gene: 78357331

Centisome position: 61.98

GC content: 63.67

Gene sequence:

>633_bases
ATGACGCAACAGACCATCCCCGTGACGGACGTGAACGAGGCGGCAGTTCTGCTGCAGGAAGGTAAAGTGGTGGTGTACCC
CACCGAGACGTTTTTTGCCGTGGGGTGTCTGGCCACAGACGTGCGCGCCGTGGATGCGGTGTACCGCATCAAGCGCCGTC
CTTCGGGCATGCCTTTGCCGGTGATCATCGGCAGTGCCGGTCAGCTGGGGCTGGTTACCGCCGTGTCTTCGCCGCTTGTT
ACACGTCTGGCAGAACTTTTCTGGCCGGGGCCGCTTTCGGTGCTGGTAACCGCGTCAGACAGAATACCTGCCATTCTGAC
CGGTGAAACCGGCAGGGTAGCGGTGCGGGTTACTCCCCATCCTGCGGCTGCCGCTCTGTGCACCGCATGCGGAGGCGCGC
TGGTTTCAACCAGTGCCAACATCAGCGGCAGGCAGGCAGTGACCGCTGCGTCCGGTCTTGACCCTGAACTGGTCGGACAG
GTGGCGGCCGTGGTTGATATGCCGCCGGCTCCCGCAGGGGGCAAACCTTCCACTCTTGTGGAAGTTGCCGGCCCCGCCCA
TGTGCGGATAGTGCGCCCCGGGGCTGTGACGGAAGATGCTCTGCAGACGGCGGGTATCAGCGTAGTGGTCTGA

Upstream 100 bases:

>100_bases
CGCATGGGCGCTTTGTATACTGCAAGACCGAAAGCCTCAAGCCGTTCACCGGTGGCGGGCATAACTGGTTGCAGGTGATT
GAATTAACGGAGGTTGCATG

Downstream 100 bases:

>100_bases
CGGCGTTCAACAACTTTTACCGGTCGTGGCATACGGGCGTGCGGGTTAAAATCTTTGTACACTCTGCGTGGTTTTTTTGG
GGGGCTTTCATGCGTCATAT

Product: translation factor SUA5

Products: NA

Alternate protein names: t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN [H]

Number of amino acids: Translated: 210; Mature: 209

Protein sequence:

>210_residues
MTQQTIPVTDVNEAAVLLQEGKVVVYPTETFFAVGCLATDVRAVDAVYRIKRRPSGMPLPVIIGSAGQLGLVTAVSSPLV
TRLAELFWPGPLSVLVTASDRIPAILTGETGRVAVRVTPHPAAAALCTACGGALVSTSANISGRQAVTAASGLDPELVGQ
VAAVVDMPPAPAGGKPSTLVEVAGPAHVRIVRPGAVTEDALQTAGISVVV

Sequences:

>Translated_210_residues
MTQQTIPVTDVNEAAVLLQEGKVVVYPTETFFAVGCLATDVRAVDAVYRIKRRPSGMPLPVIIGSAGQLGLVTAVSSPLV
TRLAELFWPGPLSVLVTASDRIPAILTGETGRVAVRVTPHPAAAALCTACGGALVSTSANISGRQAVTAASGLDPELVGQ
VAAVVDMPPAPAGGKPSTLVEVAGPAHVRIVRPGAVTEDALQTAGISVVV
>Mature_209_residues
TQQTIPVTDVNEAAVLLQEGKVVVYPTETFFAVGCLATDVRAVDAVYRIKRRPSGMPLPVIIGSAGQLGLVTAVSSPLVT
RLAELFWPGPLSVLVTASDRIPAILTGETGRVAVRVTPHPAAAALCTACGGALVSTSANISGRQAVTAASGLDPELVGQV
AAVVDMPPAPAGGKPSTLVEVAGPAHVRIVRPGAVTEDALQTAGISVVV

Specific function: Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine [H]

COG id: COG0009

COG function: function code J; Putative translation factor (SUA5)

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 YrdC-like domain [H]

Homologues:

Organism=Escherichia coli, GI2367210, Length=161, Percent_Identity=35.4037267080745, Blast_Score=82, Evalue=3e-17,
Organism=Escherichia coli, GI87081864, Length=188, Percent_Identity=27.1276595744681, Blast_Score=72, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI17537239, Length=192, Percent_Identity=26.0416666666667, Blast_Score=71, Evalue=5e-13,
Organism=Saccharomyces cerevisiae, GI6321269, Length=214, Percent_Identity=26.1682242990654, Blast_Score=67, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017945
- InterPro:   IPR004388
- InterPro:   IPR006070 [H]

Pfam domain/function: PF01300 Sua5_yciO_yrdC [H]

EC number: NA

Molecular weight: Translated: 21243; Mature: 21112

Theoretical pI: Translated: 6.51; Mature: 6.51

Prosite motif: PS51163 YRDC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTQQTIPVTDVNEAAVLLQEGKVVVYPTETFFAVGCLATDVRAVDAVYRIKRRPSGMPLP
CCCCCCCCCCCCCCEEEEECCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCE
VIIGSAGQLGLVTAVSSPLVTRLAELFWPGPLSVLVTASDRIPAILTGETGRVAVRVTPH
EEEECCCCEEEEEHHCCHHHHHHHHHHCCCCEEEEEEECCCCCEEEECCCCEEEEEECCC
PAAAALCTACGGALVSTSANISGRQAVTAASGLDPELVGQVAAVVDMPPAPAGGKPSTLV
HHHHHHHHHCCCCEEECCCCCCCCEEEEECCCCCHHHHHHHHHEEECCCCCCCCCCCEEE
EVAGPAHVRIVRPGAVTEDALQTAGISVVV
EECCCCEEEEECCCCCCHHHHHHCCEEEEC
>Mature Secondary Structure 
TQQTIPVTDVNEAAVLLQEGKVVVYPTETFFAVGCLATDVRAVDAVYRIKRRPSGMPLP
CCCCCCCCCCCCCEEEEECCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCE
VIIGSAGQLGLVTAVSSPLVTRLAELFWPGPLSVLVTASDRIPAILTGETGRVAVRVTPH
EEEECCCCEEEEEHHCCHHHHHHHHHHCCCCEEEEEEECCCCCEEEECCCCEEEEEECCC
PAAAALCTACGGALVSTSANISGRQAVTAASGLDPELVGQVAAVVDMPPAPAGGKPSTLV
HHHHHHHHHCCCCEEECCCCCCCCEEEEECCCCCHHHHHHHHHEEECCCCCCCCCCCEEE
EVAGPAHVRIVRPGAVTEDALQTAGISVVV
EECCCCEEEEECCCCCCHHHHHHCCEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA