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The map label for this gene is yfgC [C]

Identifier: 78357165

GI number: 78357165

Start: 2171586

End: 2173037

Strand: Direct

Name: yfgC [C]

Synonym: Dde_2122

Alternate gene names: 78357165

Gene position: 2171586-2173037 (Clockwise)

Preceding gene: 78357164

Following gene: 78357166

Centisome position: 58.22

GC content: 56.96

Gene sequence:

>1452_bases
ATGGCAGCACCCGAGTTCACCATTCCGCGTTACCGGCGCCCTGTGCGGCGCCGGTACGCGGCTCTGCTAATCGCAGTGCT
CTGCCTGAACCTTGTTCTGGCACCGCTTGCTGCCGCTCCGGCGCACGCCTTCGGGTTTGGTGAATTCACTGTCAAAGACG
AAATCGAACTGGGCAAAAAGTTCAGAGTTCTTGTAAAATCCCGCCTGCCAATCATTGAAGATCCTGAAATAGCAGATTAT
GTGCGGGAACTTGTGGCCCGTCTGCAGGCCGTCATTCCGCCTCAGCCTTTTCCTTTTGAAACCAGCGTGGTGCTGGACAA
TAACATGAACGCATTCGCCACGCCCGGCGGATACGTTTTTGTCTACACCGGTCTGCTGCTCAATCTTGAAAACGAATCGG
AAGTTGCGGGGGTGCTGGCCCACGAACTGGCGCACGTGACCCAGCGCCATGTGGCCAAACGCATCGAGGCCGCACAAAAA
GTCAGTCTGCTGTCCATGGCCGGACTGCTGGCCGGTTTGCTGCTGGGCAAAGGGGAAGCCAAGGACGCCATGCTTTTCGG
CACTGCCGCGGCCACTCAGGCCGCCATGCTCAACTACAGCCGCACAGATGAGCGCGAAGCCGACCAGATGGGTATGCAGT
ACCTGATCAAGGCGGGTTTTTCACCCTGGGGATTGCCCGGCGCCTTCAAACACATTCAGAACCAGCAGTGGCGCAGCGGC
GGCGGTGTGCCGCAATATCTCAGCACACACCCCGACGTACAGCAGCGTATACAGTATCTGAGCAATCAGGTCCGCCTGCT
GCCCGCTGCCCAGCGCGAAATCAAAGATGACAACACCCGCTTCCGGCGCATCCAGACCCTTATCAGGGCCCGCTTTGCCG
ATCAGGAAGCAGCAATGCACTATTTCAACAATTCCGGAACACTGCCGCCGGAACTGGCCCTTATGGGCAAAGGCATTGTC
TACGCGCGGCAGAACAAAATCTCCACCGCAGCGGAATTTTTTGATCAGGCAGTCAGCCTTGCGCCTTCAGACGCTCTCGT
CCTGCGTGAGGCCGGGCGCTTCCATTATAATAAAGGAGACAGCAAGCGCGCAGCAGGACTGCTGCAGCGGGCAGTGATGA
ACAACCCGCACGACCTGATGGCGCTGTTTTTCTTTGCACGGCTGCTGGCAGACAACGGACAGGTGGATAAAGCCGTGGAA
TACTACCGGCAGGTATTACAGAAACTGCCCGAAGACTCAGAAGTTCACTACTACTACGGGCGCATGCTCGGAGAAAACAA
CCGATTGTTTGAAGGTCATCTGCAGCTGGCATACAGCGCACTCTACGCCAACAACAAACGCAAAGTGGAATTTCACCGCA
AGCAGGCGGAAACACTTGCCCGCACAGAGGATGACAAGGCCGAACTGGAACGGTTTGACACCCGTCATGCAGAACGTGCG
GAGTTCTGGTAG

Upstream 100 bases:

>100_bases
AAGGACTTTGAACGGTCGGACGCCATCCGCGAAGAGCTGGCGCGTATGGGCGTCGAAGTACAGGACACCCCCGCAGGAGC
CGCCTGGGACATAGCCTGAT

Downstream 100 bases:

>100_bases
AGGGCTGCGGCATGCAATGGTCTTCAGCAACAGGCTGTCTGGAAATACTGCAGGGCGATCTGACCCTTTTCAAAGCCGAC
GCCGTTGTCAATGCGGCCAA

Product: TPR repeat-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 483; Mature: 482

Protein sequence:

>483_residues
MAAPEFTIPRYRRPVRRRYAALLIAVLCLNLVLAPLAAAPAHAFGFGEFTVKDEIELGKKFRVLVKSRLPIIEDPEIADY
VRELVARLQAVIPPQPFPFETSVVLDNNMNAFATPGGYVFVYTGLLLNLENESEVAGVLAHELAHVTQRHVAKRIEAAQK
VSLLSMAGLLAGLLLGKGEAKDAMLFGTAAATQAAMLNYSRTDEREADQMGMQYLIKAGFSPWGLPGAFKHIQNQQWRSG
GGVPQYLSTHPDVQQRIQYLSNQVRLLPAAQREIKDDNTRFRRIQTLIRARFADQEAAMHYFNNSGTLPPELALMGKGIV
YARQNKISTAAEFFDQAVSLAPSDALVLREAGRFHYNKGDSKRAAGLLQRAVMNNPHDLMALFFFARLLADNGQVDKAVE
YYRQVLQKLPEDSEVHYYYGRMLGENNRLFEGHLQLAYSALYANNKRKVEFHRKQAETLARTEDDKAELERFDTRHAERA
EFW

Sequences:

>Translated_483_residues
MAAPEFTIPRYRRPVRRRYAALLIAVLCLNLVLAPLAAAPAHAFGFGEFTVKDEIELGKKFRVLVKSRLPIIEDPEIADY
VRELVARLQAVIPPQPFPFETSVVLDNNMNAFATPGGYVFVYTGLLLNLENESEVAGVLAHELAHVTQRHVAKRIEAAQK
VSLLSMAGLLAGLLLGKGEAKDAMLFGTAAATQAAMLNYSRTDEREADQMGMQYLIKAGFSPWGLPGAFKHIQNQQWRSG
GGVPQYLSTHPDVQQRIQYLSNQVRLLPAAQREIKDDNTRFRRIQTLIRARFADQEAAMHYFNNSGTLPPELALMGKGIV
YARQNKISTAAEFFDQAVSLAPSDALVLREAGRFHYNKGDSKRAAGLLQRAVMNNPHDLMALFFFARLLADNGQVDKAVE
YYRQVLQKLPEDSEVHYYYGRMLGENNRLFEGHLQLAYSALYANNKRKVEFHRKQAETLARTEDDKAELERFDTRHAERA
EFW
>Mature_482_residues
AAPEFTIPRYRRPVRRRYAALLIAVLCLNLVLAPLAAAPAHAFGFGEFTVKDEIELGKKFRVLVKSRLPIIEDPEIADYV
RELVARLQAVIPPQPFPFETSVVLDNNMNAFATPGGYVFVYTGLLLNLENESEVAGVLAHELAHVTQRHVAKRIEAAQKV
SLLSMAGLLAGLLLGKGEAKDAMLFGTAAATQAAMLNYSRTDEREADQMGMQYLIKAGFSPWGLPGAFKHIQNQQWRSGG
GVPQYLSTHPDVQQRIQYLSNQVRLLPAAQREIKDDNTRFRRIQTLIRARFADQEAAMHYFNNSGTLPPELALMGKGIVY
ARQNKISTAAEFFDQAVSLAPSDALVLREAGRFHYNKGDSKRAAGLLQRAVMNNPHDLMALFFFARLLADNGQVDKAVEY
YRQVLQKLPEDSEVHYYYGRMLGENNRLFEGHLQLAYSALYANNKRKVEFHRKQAETLARTEDDKAELERFDTRHAERAE
FW

Specific function: Unknown

COG id: COG4783

COG function: function code R; Putative Zn-dependent protease, contains TPR repeats

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 4 TPR repeats [H]

Homologues:

Organism=Escherichia coli, GI1788840, Length=253, Percent_Identity=30.8300395256917, Blast_Score=130, Evalue=3e-31,
Organism=Escherichia coli, GI87081800, Length=179, Percent_Identity=27.9329608938547, Blast_Score=68, Evalue=1e-12,
Organism=Escherichia coli, GI87082185, Length=189, Percent_Identity=26.4550264550265, Blast_Score=63, Evalue=5e-11,
Organism=Saccharomyces cerevisiae, GI6322940, Length=165, Percent_Identity=33.9393939393939, Blast_Score=75, Evalue=2e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001915
- InterPro:   IPR013026
- InterPro:   IPR011990 [H]

Pfam domain/function: PF01435 Peptidase_M48 [H]

EC number: NA

Molecular weight: Translated: 54439; Mature: 54308

Theoretical pI: Translated: 9.31; Mature: 9.31

Prosite motif: PS50005 TPR ; PS50293 TPR_REGION

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAAPEFTIPRYRRPVRRRYAALLIAVLCLNLVLAPLAAAPAHAFGFGEFTVKDEIELGKK
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCCEEEHHHHHHHHH
FRVLVKSRLPIIEDPEIADYVRELVARLQAVIPPQPFPFETSVVLDNNMNAFATPGGYVF
HHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCEEECCCCEEE
VYTGLLLNLENESEVAGVLAHELAHVTQRHVAKRIEAAQKVSLLSMAGLLAGLLLGKGEA
EEECCCEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
KDAMLFGTAAATQAAMLNYSRTDEREADQMGMQYLIKAGFSPWGLPGAFKHIQNQQWRSG
CCCEEEEHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCCCCCC
GGVPQYLSTHPDVQQRIQYLSNQVRLLPAAQREIKDDNTRFRRIQTLIRARFADQEAAMH
CCCCCHHCCCCCHHHHHHHHHHHHEECHHHHHHCCCCHHHHHHHHHHHHHHHCCHHHHHH
YFNNSGTLPPELALMGKGIVYARQNKISTAAEFFDQAVSLAPSDALVLREAGRFHYNKGD
HHCCCCCCCHHHHHHCCCEEEEECCHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCCC
SKRAAGLLQRAVMNNPHDLMALFFFARLLADNGQVDKAVEYYRQVLQKLPEDSEVHYYYG
HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCEEEEEH
RMLGENNRLFEGHLQLAYSALYANNKRKVEFHRKQAETLARTEDDKAELERFDTRHAERA
HHHCCCCCEEHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCHHC
EFW
CCC
>Mature Secondary Structure 
AAPEFTIPRYRRPVRRRYAALLIAVLCLNLVLAPLAAAPAHAFGFGEFTVKDEIELGKK
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCCEEEHHHHHHHHH
FRVLVKSRLPIIEDPEIADYVRELVARLQAVIPPQPFPFETSVVLDNNMNAFATPGGYVF
HHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCEEECCCCEEE
VYTGLLLNLENESEVAGVLAHELAHVTQRHVAKRIEAAQKVSLLSMAGLLAGLLLGKGEA
EEECCCEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
KDAMLFGTAAATQAAMLNYSRTDEREADQMGMQYLIKAGFSPWGLPGAFKHIQNQQWRSG
CCCEEEEHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCCCCCC
GGVPQYLSTHPDVQQRIQYLSNQVRLLPAAQREIKDDNTRFRRIQTLIRARFADQEAAMH
CCCCCHHCCCCCHHHHHHHHHHHHEECHHHHHHCCCCHHHHHHHHHHHHHHHCCHHHHHH
YFNNSGTLPPELALMGKGIVYARQNKISTAAEFFDQAVSLAPSDALVLREAGRFHYNKGD
HHCCCCCCCHHHHHHCCCEEEEECCHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCCC
SKRAAGLLQRAVMNNPHDLMALFFFARLLADNGQVDKAVEYYRQVLQKLPEDSEVHYYYG
HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCEEEEEH
RMLGENNRLFEGHLQLAYSALYANNKRKVEFHRKQAETLARTEDDKAELERFDTRHAERA
HHHCCCCCEEHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCHHC
EFW
CCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 10952301 [H]