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The map label for this gene is yebA [H]

Identifier: 78357122

GI number: 78357122

Start: 2119899

End: 2121206

Strand: Direct

Name: yebA [H]

Synonym: Dde_2079

Alternate gene names: 78357122

Gene position: 2119899-2121206 (Clockwise)

Preceding gene: 78357121

Following gene: 78357126

Centisome position: 56.83

GC content: 57.03

Gene sequence:

>1308_bases
ATGAAAAAATTCCTGCTGTCCACCGCGCTTCTGGCTATCGTGGGCGGTCTTGTCGTTCTGGGTTTTCTGTTGTTCCGCGA
CCAGCAAGGTCCGCAGATATCCCTGACCCCCGCTGAAGGCCGCATATCTCCGCGGACTGTCTTTAAGCTGACCGCAAAAG
ACACCAACAGCGGCGTGAAAGCGCTGAGTGTGCGCGTAAAGAAAAACAGCCGTGAATTTATCGCGCTGGACCAGCAGTGG
GCGGACAAACTTGTCTCGCGCACGGAAGAGTTCAGCCTGGAAAAAGCCGAGGAAATGGGTGAAGGAACGGTGGAGCTTAT
TGTCAAAGCCACCGACTCATCCTTTGCCGCATTCGGCAAAGGCAATACATCCACCCGCTCGTTCACGCTGCGGCTCGACA
GCCAGCCCCCGCGCATCAGTGTAACTACCTTGCCGCCTTACGTGCGCCGCGGCGGCTCCGCCTGTATTGCCTATACCGTC
AATGAAGACGTCAGGCAGACCGGCGTTACCGTGAATGACCTCTTCTTTCCCGGCTACAGACAGGCCGATGGCTCATATCT
GTGCTTCTTTGCTTTTCCGTTCTATGAAGACACAAACACCTATGCTCCGCGCGTAACCGCAGAGGACGAGGCCGGCAACG
TCACATCCATATCACTGGCAGTAAAGCCGCTGCATGTGGCGTTCAGAGAGGATACCATCCGGCTGCCCGATTCCTTCCTT
GATAACAAGATGCAGGACTTCACCGATGAGTTCCCGGGACAGATGTCTTCTCTTGAGCGCTTTCTCAAAGTGAACAGAGA
CTTGCGAAAAGCCAACAGAGCTGCCCTGCTGAGCATTGGCCGCAAGACGTCTCCGGCCATGCTGTGGTCCGGCCGGTTCC
TCAACCTGCCCAACGCCAGCAACAGAGCGGGATTCGCCGATCACCGCGCCTACATCTACAACGGTCAGCAGGTAGACGAC
CAGTACCATCTGGGACTGGACATGGCCTCCATCGCACGGGCACCCATTCCTGCCGCCAACAACGGAACTGTTGTCTTTGC
CGACGACATGGGCATTTACGGACTGTGCGTTGTGGTGGACCACGGGCTGGGCCTCCAGACACTGTATGCCCACCTTTCAG
AAATCCACGTGAAAGACGGCGACACGGTACAGCGCGGCGATATTCTGGGACTTACCGGCACTACCGGCATGGCAGGCGGT
GACCATCTGCACTTCGGTGTCATACTTTCAGGGCTGCCGGTTCAGCCGCTGGAATGGCTCGATCCCCGCTGGATCAAACA
TAACATCACGGACAGGCTCGAACGCTGA

Upstream 100 bases:

>100_bases
CTGTAGAAACCGTGTAGGCGCGACGCGTCTGCCTTTTTGTATCAGAGACCGGCCGCTCGCCATGCGGGCGGCCATTGCAT
TGCACTGGAGTCAGATTTCT

Downstream 100 bases:

>100_bases
GCCTGCTTCAGCAAGACATAAGCCAGACAAAAAGGCCGCCTCCGGGCGGCCTTTCTTTTTGCCGGTCGCCGGACCGGTCC
ATGCATAATGCCCTGCAGCA

Product: M24/M37 family peptidase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 435; Mature: 435

Protein sequence:

>435_residues
MKKFLLSTALLAIVGGLVVLGFLLFRDQQGPQISLTPAEGRISPRTVFKLTAKDTNSGVKALSVRVKKNSREFIALDQQW
ADKLVSRTEEFSLEKAEEMGEGTVELIVKATDSSFAAFGKGNTSTRSFTLRLDSQPPRISVTTLPPYVRRGGSACIAYTV
NEDVRQTGVTVNDLFFPGYRQADGSYLCFFAFPFYEDTNTYAPRVTAEDEAGNVTSISLAVKPLHVAFREDTIRLPDSFL
DNKMQDFTDEFPGQMSSLERFLKVNRDLRKANRAALLSIGRKTSPAMLWSGRFLNLPNASNRAGFADHRAYIYNGQQVDD
QYHLGLDMASIARAPIPAANNGTVVFADDMGIYGLCVVVDHGLGLQTLYAHLSEIHVKDGDTVQRGDILGLTGTTGMAGG
DHLHFGVILSGLPVQPLEWLDPRWIKHNITDRLER

Sequences:

>Translated_435_residues
MKKFLLSTALLAIVGGLVVLGFLLFRDQQGPQISLTPAEGRISPRTVFKLTAKDTNSGVKALSVRVKKNSREFIALDQQW
ADKLVSRTEEFSLEKAEEMGEGTVELIVKATDSSFAAFGKGNTSTRSFTLRLDSQPPRISVTTLPPYVRRGGSACIAYTV
NEDVRQTGVTVNDLFFPGYRQADGSYLCFFAFPFYEDTNTYAPRVTAEDEAGNVTSISLAVKPLHVAFREDTIRLPDSFL
DNKMQDFTDEFPGQMSSLERFLKVNRDLRKANRAALLSIGRKTSPAMLWSGRFLNLPNASNRAGFADHRAYIYNGQQVDD
QYHLGLDMASIARAPIPAANNGTVVFADDMGIYGLCVVVDHGLGLQTLYAHLSEIHVKDGDTVQRGDILGLTGTTGMAGG
DHLHFGVILSGLPVQPLEWLDPRWIKHNITDRLER
>Mature_435_residues
MKKFLLSTALLAIVGGLVVLGFLLFRDQQGPQISLTPAEGRISPRTVFKLTAKDTNSGVKALSVRVKKNSREFIALDQQW
ADKLVSRTEEFSLEKAEEMGEGTVELIVKATDSSFAAFGKGNTSTRSFTLRLDSQPPRISVTTLPPYVRRGGSACIAYTV
NEDVRQTGVTVNDLFFPGYRQADGSYLCFFAFPFYEDTNTYAPRVTAEDEAGNVTSISLAVKPLHVAFREDTIRLPDSFL
DNKMQDFTDEFPGQMSSLERFLKVNRDLRKANRAALLSIGRKTSPAMLWSGRFLNLPNASNRAGFADHRAYIYNGQQVDD
QYHLGLDMASIARAPIPAANNGTVVFADDMGIYGLCVVVDHGLGLQTLYAHLSEIHVKDGDTVQRGDILGLTGTTGMAGG
DHLHFGVILSGLPVQPLEWLDPRWIKHNITDRLER

Specific function: Could be involved in cell wall degradation or formation [H]

COG id: COG0739

COG function: function code M; Membrane proteins related to metalloendopeptidases

Gene ontology:

Cell location: Cell membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 LysM repeat [H]

Homologues:

Organism=Escherichia coli, GI87081989, Length=112, Percent_Identity=38.3928571428571, Blast_Score=75, Evalue=8e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011055
- InterPro:   IPR013731
- InterPro:   IPR016047
- InterPro:   IPR002886
- InterPro:   IPR018392
- InterPro:   IPR002482 [H]

Pfam domain/function: PF01476 LysM; PF08525 OapA_N; PF01551 Peptidase_M23 [H]

EC number: 3.4.24.- [C]

Molecular weight: Translated: 47984; Mature: 47984

Theoretical pI: Translated: 7.02; Mature: 7.02

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKFLLSTALLAIVGGLVVLGFLLFRDQQGPQISLTPAEGRISPRTVFKLTAKDTNSGVK
CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCEEEEEEEECCCCCCEE
ALSVRVKKNSREFIALDQQWADKLVSRTEEFSLEKAEEMGEGTVELIVKATDSSFAAFGK
EEEEEEECCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCEEEECC
GNTSTRSFTLRLDSQPPRISVTTLPPYVRRGGSACIAYTVNEDVRQTGVTVNDLFFPGYR
CCCCCEEEEEEECCCCCEEEEEECCHHHHCCCCEEEEEEECCHHHHHCCEEEHEECCCCC
QADGSYLCFFAFPFYEDTNTYAPRVTAEDEAGNVTSISLAVKPLHVAFREDTIRLPDSFL
CCCCCEEEEEEEEEECCCCCCCCEEECCCCCCCEEEEEEEEEEEEEEEECCCEECCHHHH
DNKMQDFTDEFPGQMSSLERFLKVNRDLRKANRAALLSIGRKTSPAMLWSGRFLNLPNAS
HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCHHHEEECCCCCCCEEEECCEEEECCCCC
NRAGFADHRAYIYNGQQVDDQYHLGLDMASIARAPIPAANNGTVVFADDMGIYGLCVVVD
CCCCCCCCEEEEECCCCCCCCEECCCCHHHHHCCCCCCCCCCEEEEECCCCCEEEEEEEE
HGLGLQTLYAHLSEIHVKDGDTVQRGDILGLTGTTGMAGGDHLHFGVILSGLPVQPLEWL
CCCCHHHHHHHHHHEEECCCCEEECCCEEEECCCCCCCCCCEEEEEEEECCCCCCCHHHC
DPRWIKHNITDRLER
CCHHHHCCHHHHHCC
>Mature Secondary Structure
MKKFLLSTALLAIVGGLVVLGFLLFRDQQGPQISLTPAEGRISPRTVFKLTAKDTNSGVK
CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCEEEEEEEECCCCCCEE
ALSVRVKKNSREFIALDQQWADKLVSRTEEFSLEKAEEMGEGTVELIVKATDSSFAAFGK
EEEEEEECCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCEEEECC
GNTSTRSFTLRLDSQPPRISVTTLPPYVRRGGSACIAYTVNEDVRQTGVTVNDLFFPGYR
CCCCCEEEEEEECCCCCEEEEEECCHHHHCCCCEEEEEEECCHHHHHCCEEEHEECCCCC
QADGSYLCFFAFPFYEDTNTYAPRVTAEDEAGNVTSISLAVKPLHVAFREDTIRLPDSFL
CCCCCEEEEEEEEEECCCCCCCCEEECCCCCCCEEEEEEEEEEEEEEEECCCEECCHHHH
DNKMQDFTDEFPGQMSSLERFLKVNRDLRKANRAALLSIGRKTSPAMLWSGRFLNLPNAS
HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCHHHEEECCCCCCCEEEECCEEEECCCCC
NRAGFADHRAYIYNGQQVDDQYHLGLDMASIARAPIPAANNGTVVFADDMGIYGLCVVVD
CCCCCCCCEEEEECCCCCCCCEECCCCHHHHHCCCCCCCCCCEEEEECCCCCEEEEEEEE
HGLGLQTLYAHLSEIHVKDGDTVQRGDILGLTGTTGMAGGDHLHFGVILSGLPVQPLEWL
CCCCHHHHHHHHHHEEECCCCEEECCCEEEECCCCCCCCCCEEEEEEEECCCCCCCHHHC
DPRWIKHNITDRLER
CCHHHHCCHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]