| Definition | Desulfovibrio desulfuricans subsp. desulfuricans str. G20 chromosome, complete genome. |
|---|---|
| Accession | NC_007519 |
| Length | 3,730,232 |
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The map label for this gene is yjeF [H]
Identifier: 78357088
GI number: 78357088
Start: 2087402
End: 2089048
Strand: Direct
Name: yjeF [H]
Synonym: Dde_2045
Alternate gene names: 78357088
Gene position: 2087402-2089048 (Clockwise)
Preceding gene: 78357087
Following gene: 78357089
Centisome position: 55.96
GC content: 60.78
Gene sequence:
>1647_bases ATGTTTCTCCCCCTGCCCACACCACAGGAAATGAACCGGTGGGATCAGGCTGCCGTTGACGAAGCGGGCATGCCTGCCGA GATGCTGATGGAAAACGCCGCCCGCGAAGCTTTCAGAGTGCTGTGCGGCTGCTTTGAAAAATCCTCGGCAACGGGCGCGC ATACGGCGGAAGACCCTGCATGGTGCCTTGCTGAAAAGCGCATCCTCTGTTTCATGGGTGGAGGAAACAACGGCGGCGAT ACCGCCGCACTGGCCAGACTTCTTTGCGGTGCCGGTGCCACCGTGCTTGTGGTGCACACGCGCCCGCTTGAAGATTTCCG GCAGGAGGCGGCATGGCACATAGAGCGTGCACTTCAGGCGGGAGTGCTTTTTGTACAGTATGACGCATCTTGTCCCGCAG TTATCCCCGCTGTCCTTTCCACCAAGGAATTATCAAACTGGAACGACGACGCCTGCCCGGTGCCCGTCATGCCGGACATC GTGGTTGACGGTCTGCTGGGAACGGGACTGCGGGGCGAAGTGTCAGATTCGCTGCTGGCACTTATCCGGCATATCAATGC GCTGGCACGGACCGCATTTGTCTTTTCACTGGATATTCCCAGCGGTATGGACGGACTGACGGGGCTGCCCTCTCCGGAGT GCGTCTGTGCCCGCTGCACCGTCACATTTCAGGCTCCGAAGACAGGACTGCTTCACCCCGAGGCAAAGGAATATACCGGC AGGCTGCACATACGGGACATCGGCATTCCTCCCGCTATCCAGAACAGATATCCCACGCGACTTCGCAGGGCCACATGTGC TGTTGCCGCACTGCCCCCCCCGCCCTCGGCGGCCATGCACAAGGGCACGGCAGGCCGTGTGCTGGTCATCGGCGGGTCCG CAGGGCTTTGCGGTGCTCCGCTGCTGGCGGCTGCCGGAGCCTTGCGCGCCGGTGCCGGACTCGTCACGGTGGCCGTTCCT GCCCGCCTTGAAGCCTGTGTCAGACATGGCAATCCGGACATCATGACATTGCCGCTTGCGTGCGGCGACGACTGGGCCGC TTTTGACGCACGCATGCTGGAAGGGCTGGATGAGCGCTACGACGCAGTCATTGTGGGCAACGGCATGGGGCGCTCGGCTC ACGCCGGCGAGGCGCTTGCGGAAATTTTGAAAACCCCCAGGCCTCCCTCCGTCATCGATGCGGACGCACTTTTCCATTTA CGCCACCCTACGCAGATGCTTGCATTGATGCGTGAAACAGATATTCTTACACCTCATCCGGGCGAGATGGCTTTTCTGAC GGGCCTGACCATAGAGCAGGTACAGGCAGACAGGCTTGCCGCGCTGGAAATGCTGACGCGGCGCACAGCAGCAACCTGTA TTCTGAAGGGCGCAGGCACTCTGGTGGGCAGCACACAGTCATTTACAGCGTTTATCGACGCCGGAGGGCCGTCACTGGCG GTGGGCGGCTCCGGCGATGTGCTTGCCGGTATATGCGCCGCATTTGCGGCACAGGGCCTTGGGGCATTCAATGCCGCCGC CGCTGCGGCATTCATCCACGGAAAAGCCGGAGAACTCCTGTTGCAGGAATTTCCGTTGCGCGGTACTACCGCATCTGAAA TAGCTGATACCATTCCCCGTACCAGAAAGGAGCTTTATCATGCTTAG
Upstream 100 bases:
>100_bases TCCACCTTTCACTGACCCACGGCAGAGACACCGCTGCCGCCGTTGTCATACTCGAAGGCTGACAAAGGGGCCCCGCGGAT CTGCAACAAGAGGTGTGTTT
Downstream 100 bases:
>100_bases CGCAAAAGACATCATGTCCGCAGACCCTGTGACCGTAGCTCCTGACATGGATATCATCGAAGCCACCAAACTGATGCTGG AATACAAGTTCAACGGCCTG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 548; Mature: 548
Protein sequence:
>548_residues MFLPLPTPQEMNRWDQAAVDEAGMPAEMLMENAAREAFRVLCGCFEKSSATGAHTAEDPAWCLAEKRILCFMGGGNNGGD TAALARLLCGAGATVLVVHTRPLEDFRQEAAWHIERALQAGVLFVQYDASCPAVIPAVLSTKELSNWNDDACPVPVMPDI VVDGLLGTGLRGEVSDSLLALIRHINALARTAFVFSLDIPSGMDGLTGLPSPECVCARCTVTFQAPKTGLLHPEAKEYTG RLHIRDIGIPPAIQNRYPTRLRRATCAVAALPPPPSAAMHKGTAGRVLVIGGSAGLCGAPLLAAAGALRAGAGLVTVAVP ARLEACVRHGNPDIMTLPLACGDDWAAFDARMLEGLDERYDAVIVGNGMGRSAHAGEALAEILKTPRPPSVIDADALFHL RHPTQMLALMRETDILTPHPGEMAFLTGLTIEQVQADRLAALEMLTRRTAATCILKGAGTLVGSTQSFTAFIDAGGPSLA VGGSGDVLAGICAAFAAQGLGAFNAAAAAAFIHGKAGELLLQEFPLRGTTASEIADTIPRTRKELYHA
Sequences:
>Translated_548_residues MFLPLPTPQEMNRWDQAAVDEAGMPAEMLMENAAREAFRVLCGCFEKSSATGAHTAEDPAWCLAEKRILCFMGGGNNGGD TAALARLLCGAGATVLVVHTRPLEDFRQEAAWHIERALQAGVLFVQYDASCPAVIPAVLSTKELSNWNDDACPVPVMPDI VVDGLLGTGLRGEVSDSLLALIRHINALARTAFVFSLDIPSGMDGLTGLPSPECVCARCTVTFQAPKTGLLHPEAKEYTG RLHIRDIGIPPAIQNRYPTRLRRATCAVAALPPPPSAAMHKGTAGRVLVIGGSAGLCGAPLLAAAGALRAGAGLVTVAVP ARLEACVRHGNPDIMTLPLACGDDWAAFDARMLEGLDERYDAVIVGNGMGRSAHAGEALAEILKTPRPPSVIDADALFHL RHPTQMLALMRETDILTPHPGEMAFLTGLTIEQVQADRLAALEMLTRRTAATCILKGAGTLVGSTQSFTAFIDAGGPSLA VGGSGDVLAGICAAFAAQGLGAFNAAAAAAFIHGKAGELLLQEFPLRGTTASEIADTIPRTRKELYHA >Mature_548_residues MFLPLPTPQEMNRWDQAAVDEAGMPAEMLMENAAREAFRVLCGCFEKSSATGAHTAEDPAWCLAEKRILCFMGGGNNGGD TAALARLLCGAGATVLVVHTRPLEDFRQEAAWHIERALQAGVLFVQYDASCPAVIPAVLSTKELSNWNDDACPVPVMPDI VVDGLLGTGLRGEVSDSLLALIRHINALARTAFVFSLDIPSGMDGLTGLPSPECVCARCTVTFQAPKTGLLHPEAKEYTG RLHIRDIGIPPAIQNRYPTRLRRATCAVAALPPPPSAAMHKGTAGRVLVIGGSAGLCGAPLLAAAGALRAGAGLVTVAVP ARLEACVRHGNPDIMTLPLACGDDWAAFDARMLEGLDERYDAVIVGNGMGRSAHAGEALAEILKTPRPPSVIDADALFHL RHPTQMLALMRETDILTPHPGEMAFLTGLTIEQVQADRLAALEMLTRRTAATCILKGAGTLVGSTQSFTAFIDAGGPSLA VGGSGDVLAGICAAFAAQGLGAFNAAAAAAFIHGKAGELLLQEFPLRGTTASEIADTIPRTRKELYHA
Specific function: Unknown
COG id: COG0063
COG function: function code G; Predicted sugar kinase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 YjeF N-terminal domain [H]
Homologues:
Organism=Escherichia coli, GI1790609, Length=535, Percent_Identity=31.0280373831776, Blast_Score=209, Evalue=2e-55, Organism=Caenorhabditis elegans, GI17554656, Length=304, Percent_Identity=27.3026315789474, Blast_Score=76, Evalue=4e-14, Organism=Drosophila melanogaster, GI21357759, Length=293, Percent_Identity=29.6928327645051, Blast_Score=66, Evalue=6e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR017953 - InterPro: IPR000631 - InterPro: IPR004443 [H]
Pfam domain/function: PF01256 Carb_kinase; PF03853 YjeF_N [H]
EC number: NA
Molecular weight: Translated: 57406; Mature: 57406
Theoretical pI: Translated: 5.88; Mature: 5.88
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.9 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 5.8 %Cys+Met (Translated Protein) 2.9 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 5.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MFLPLPTPQEMNRWDQAAVDEAGMPAEMLMENAAREAFRVLCGCFEKSSATGAHTAEDPA CCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCH WCLAEKRILCFMGGGNNGGDTAALARLLCGAGATVLVVHTRPLEDFRQEAAWHIERALQA HHHCCCCEEEEECCCCCCCHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHHHHHHH GVLFVQYDASCPAVIPAVLSTKELSNWNDDACPVPVMPDIVVDGLLGTGLRGEVSDSLLA CEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHH LIRHINALARTAFVFSLDIPSGMDGLTGLPSPECVCARCTVTFQAPKTGLLHPEAKEYTG HHHHHHHHHHHEEEEEECCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCCCCCCHHHHCC RLHIRDIGIPPAIQNRYPTRLRRATCAVAALPPPPSAAMHKGTAGRVLVIGGSAGLCGAP EEEEEECCCCCCCCCCCHHHHHHHHHEEEECCCCCCHHHCCCCCCEEEEEECCCCCCCHH LLAAAGALRAGAGLVTVAVPARLEACVRHGNPDIMTLPLACGDDWAAFDARMLEGLDERY HHHHHHHHHCCCCEEEEECHHHHHHHHHCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHC DAVIVGNGMGRSAHAGEALAEILKTPRPPSVIDADALFHLRHPTQMLALMRETDILTPHP CEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHCCHHHHHHHHHHCCCCCCCC GEMAFLTGLTIEQVQADRLAALEMLTRRTAATCILKGAGTLVGSTQSFTAFIDAGGPSLA CCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHEEECCCCEECCCCCEEEEEECCCCEEE VGGSGDVLAGICAAFAAQGLGAFNAAAAAAFIHGKAGELLLQEFPLRGTTASEIADTIPR ECCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHCCCCCCCHHHHHHHHHH TRKELYHA HHHHHCCC >Mature Secondary Structure MFLPLPTPQEMNRWDQAAVDEAGMPAEMLMENAAREAFRVLCGCFEKSSATGAHTAEDPA CCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCH WCLAEKRILCFMGGGNNGGDTAALARLLCGAGATVLVVHTRPLEDFRQEAAWHIERALQA HHHCCCCEEEEECCCCCCCHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHHHHHHH GVLFVQYDASCPAVIPAVLSTKELSNWNDDACPVPVMPDIVVDGLLGTGLRGEVSDSLLA CEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHH LIRHINALARTAFVFSLDIPSGMDGLTGLPSPECVCARCTVTFQAPKTGLLHPEAKEYTG HHHHHHHHHHHEEEEEECCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCCCCCCHHHHCC RLHIRDIGIPPAIQNRYPTRLRRATCAVAALPPPPSAAMHKGTAGRVLVIGGSAGLCGAP EEEEEECCCCCCCCCCCHHHHHHHHHEEEECCCCCCHHHCCCCCCEEEEEECCCCCCCHH LLAAAGALRAGAGLVTVAVPARLEACVRHGNPDIMTLPLACGDDWAAFDARMLEGLDERY HHHHHHHHHCCCCEEEEECHHHHHHHHHCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHC DAVIVGNGMGRSAHAGEALAEILKTPRPPSVIDADALFHLRHPTQMLALMRETDILTPHP CEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHCCHHHHHHHHHHCCCCCCCC GEMAFLTGLTIEQVQADRLAALEMLTRRTAATCILKGAGTLVGSTQSFTAFIDAGGPSLA CCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHEEECCCCEECCCCCEEEEEECCCCEEE VGGSGDVLAGICAAFAAQGLGAFNAAAAAAFIHGKAGELLLQEFPLRGTTASEIADTIPR ECCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHCCCCCCCHHHHHHHHHH TRKELYHA HHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 7610040; 9278503; 7511774 [H]