Definition Desulfovibrio desulfuricans subsp. desulfuricans str. G20 chromosome, complete genome.
Accession NC_007519
Length 3,730,232

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The map label for this gene is yjeF [H]

Identifier: 78357088

GI number: 78357088

Start: 2087402

End: 2089048

Strand: Direct

Name: yjeF [H]

Synonym: Dde_2045

Alternate gene names: 78357088

Gene position: 2087402-2089048 (Clockwise)

Preceding gene: 78357087

Following gene: 78357089

Centisome position: 55.96

GC content: 60.78

Gene sequence:

>1647_bases
ATGTTTCTCCCCCTGCCCACACCACAGGAAATGAACCGGTGGGATCAGGCTGCCGTTGACGAAGCGGGCATGCCTGCCGA
GATGCTGATGGAAAACGCCGCCCGCGAAGCTTTCAGAGTGCTGTGCGGCTGCTTTGAAAAATCCTCGGCAACGGGCGCGC
ATACGGCGGAAGACCCTGCATGGTGCCTTGCTGAAAAGCGCATCCTCTGTTTCATGGGTGGAGGAAACAACGGCGGCGAT
ACCGCCGCACTGGCCAGACTTCTTTGCGGTGCCGGTGCCACCGTGCTTGTGGTGCACACGCGCCCGCTTGAAGATTTCCG
GCAGGAGGCGGCATGGCACATAGAGCGTGCACTTCAGGCGGGAGTGCTTTTTGTACAGTATGACGCATCTTGTCCCGCAG
TTATCCCCGCTGTCCTTTCCACCAAGGAATTATCAAACTGGAACGACGACGCCTGCCCGGTGCCCGTCATGCCGGACATC
GTGGTTGACGGTCTGCTGGGAACGGGACTGCGGGGCGAAGTGTCAGATTCGCTGCTGGCACTTATCCGGCATATCAATGC
GCTGGCACGGACCGCATTTGTCTTTTCACTGGATATTCCCAGCGGTATGGACGGACTGACGGGGCTGCCCTCTCCGGAGT
GCGTCTGTGCCCGCTGCACCGTCACATTTCAGGCTCCGAAGACAGGACTGCTTCACCCCGAGGCAAAGGAATATACCGGC
AGGCTGCACATACGGGACATCGGCATTCCTCCCGCTATCCAGAACAGATATCCCACGCGACTTCGCAGGGCCACATGTGC
TGTTGCCGCACTGCCCCCCCCGCCCTCGGCGGCCATGCACAAGGGCACGGCAGGCCGTGTGCTGGTCATCGGCGGGTCCG
CAGGGCTTTGCGGTGCTCCGCTGCTGGCGGCTGCCGGAGCCTTGCGCGCCGGTGCCGGACTCGTCACGGTGGCCGTTCCT
GCCCGCCTTGAAGCCTGTGTCAGACATGGCAATCCGGACATCATGACATTGCCGCTTGCGTGCGGCGACGACTGGGCCGC
TTTTGACGCACGCATGCTGGAAGGGCTGGATGAGCGCTACGACGCAGTCATTGTGGGCAACGGCATGGGGCGCTCGGCTC
ACGCCGGCGAGGCGCTTGCGGAAATTTTGAAAACCCCCAGGCCTCCCTCCGTCATCGATGCGGACGCACTTTTCCATTTA
CGCCACCCTACGCAGATGCTTGCATTGATGCGTGAAACAGATATTCTTACACCTCATCCGGGCGAGATGGCTTTTCTGAC
GGGCCTGACCATAGAGCAGGTACAGGCAGACAGGCTTGCCGCGCTGGAAATGCTGACGCGGCGCACAGCAGCAACCTGTA
TTCTGAAGGGCGCAGGCACTCTGGTGGGCAGCACACAGTCATTTACAGCGTTTATCGACGCCGGAGGGCCGTCACTGGCG
GTGGGCGGCTCCGGCGATGTGCTTGCCGGTATATGCGCCGCATTTGCGGCACAGGGCCTTGGGGCATTCAATGCCGCCGC
CGCTGCGGCATTCATCCACGGAAAAGCCGGAGAACTCCTGTTGCAGGAATTTCCGTTGCGCGGTACTACCGCATCTGAAA
TAGCTGATACCATTCCCCGTACCAGAAAGGAGCTTTATCATGCTTAG

Upstream 100 bases:

>100_bases
TCCACCTTTCACTGACCCACGGCAGAGACACCGCTGCCGCCGTTGTCATACTCGAAGGCTGACAAAGGGGCCCCGCGGAT
CTGCAACAAGAGGTGTGTTT

Downstream 100 bases:

>100_bases
CGCAAAAGACATCATGTCCGCAGACCCTGTGACCGTAGCTCCTGACATGGATATCATCGAAGCCACCAAACTGATGCTGG
AATACAAGTTCAACGGCCTG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 548; Mature: 548

Protein sequence:

>548_residues
MFLPLPTPQEMNRWDQAAVDEAGMPAEMLMENAAREAFRVLCGCFEKSSATGAHTAEDPAWCLAEKRILCFMGGGNNGGD
TAALARLLCGAGATVLVVHTRPLEDFRQEAAWHIERALQAGVLFVQYDASCPAVIPAVLSTKELSNWNDDACPVPVMPDI
VVDGLLGTGLRGEVSDSLLALIRHINALARTAFVFSLDIPSGMDGLTGLPSPECVCARCTVTFQAPKTGLLHPEAKEYTG
RLHIRDIGIPPAIQNRYPTRLRRATCAVAALPPPPSAAMHKGTAGRVLVIGGSAGLCGAPLLAAAGALRAGAGLVTVAVP
ARLEACVRHGNPDIMTLPLACGDDWAAFDARMLEGLDERYDAVIVGNGMGRSAHAGEALAEILKTPRPPSVIDADALFHL
RHPTQMLALMRETDILTPHPGEMAFLTGLTIEQVQADRLAALEMLTRRTAATCILKGAGTLVGSTQSFTAFIDAGGPSLA
VGGSGDVLAGICAAFAAQGLGAFNAAAAAAFIHGKAGELLLQEFPLRGTTASEIADTIPRTRKELYHA

Sequences:

>Translated_548_residues
MFLPLPTPQEMNRWDQAAVDEAGMPAEMLMENAAREAFRVLCGCFEKSSATGAHTAEDPAWCLAEKRILCFMGGGNNGGD
TAALARLLCGAGATVLVVHTRPLEDFRQEAAWHIERALQAGVLFVQYDASCPAVIPAVLSTKELSNWNDDACPVPVMPDI
VVDGLLGTGLRGEVSDSLLALIRHINALARTAFVFSLDIPSGMDGLTGLPSPECVCARCTVTFQAPKTGLLHPEAKEYTG
RLHIRDIGIPPAIQNRYPTRLRRATCAVAALPPPPSAAMHKGTAGRVLVIGGSAGLCGAPLLAAAGALRAGAGLVTVAVP
ARLEACVRHGNPDIMTLPLACGDDWAAFDARMLEGLDERYDAVIVGNGMGRSAHAGEALAEILKTPRPPSVIDADALFHL
RHPTQMLALMRETDILTPHPGEMAFLTGLTIEQVQADRLAALEMLTRRTAATCILKGAGTLVGSTQSFTAFIDAGGPSLA
VGGSGDVLAGICAAFAAQGLGAFNAAAAAAFIHGKAGELLLQEFPLRGTTASEIADTIPRTRKELYHA
>Mature_548_residues
MFLPLPTPQEMNRWDQAAVDEAGMPAEMLMENAAREAFRVLCGCFEKSSATGAHTAEDPAWCLAEKRILCFMGGGNNGGD
TAALARLLCGAGATVLVVHTRPLEDFRQEAAWHIERALQAGVLFVQYDASCPAVIPAVLSTKELSNWNDDACPVPVMPDI
VVDGLLGTGLRGEVSDSLLALIRHINALARTAFVFSLDIPSGMDGLTGLPSPECVCARCTVTFQAPKTGLLHPEAKEYTG
RLHIRDIGIPPAIQNRYPTRLRRATCAVAALPPPPSAAMHKGTAGRVLVIGGSAGLCGAPLLAAAGALRAGAGLVTVAVP
ARLEACVRHGNPDIMTLPLACGDDWAAFDARMLEGLDERYDAVIVGNGMGRSAHAGEALAEILKTPRPPSVIDADALFHL
RHPTQMLALMRETDILTPHPGEMAFLTGLTIEQVQADRLAALEMLTRRTAATCILKGAGTLVGSTQSFTAFIDAGGPSLA
VGGSGDVLAGICAAFAAQGLGAFNAAAAAAFIHGKAGELLLQEFPLRGTTASEIADTIPRTRKELYHA

Specific function: Unknown

COG id: COG0063

COG function: function code G; Predicted sugar kinase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 YjeF N-terminal domain [H]

Homologues:

Organism=Escherichia coli, GI1790609, Length=535, Percent_Identity=31.0280373831776, Blast_Score=209, Evalue=2e-55,
Organism=Caenorhabditis elegans, GI17554656, Length=304, Percent_Identity=27.3026315789474, Blast_Score=76, Evalue=4e-14,
Organism=Drosophila melanogaster, GI21357759, Length=293, Percent_Identity=29.6928327645051, Blast_Score=66, Evalue=6e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017953
- InterPro:   IPR000631
- InterPro:   IPR004443 [H]

Pfam domain/function: PF01256 Carb_kinase; PF03853 YjeF_N [H]

EC number: NA

Molecular weight: Translated: 57406; Mature: 57406

Theoretical pI: Translated: 5.88; Mature: 5.88

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.9 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
5.8 %Cys+Met (Translated Protein)
2.9 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
5.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFLPLPTPQEMNRWDQAAVDEAGMPAEMLMENAAREAFRVLCGCFEKSSATGAHTAEDPA
CCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCH
WCLAEKRILCFMGGGNNGGDTAALARLLCGAGATVLVVHTRPLEDFRQEAAWHIERALQA
HHHCCCCEEEEECCCCCCCHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHHHHHHH
GVLFVQYDASCPAVIPAVLSTKELSNWNDDACPVPVMPDIVVDGLLGTGLRGEVSDSLLA
CEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHH
LIRHINALARTAFVFSLDIPSGMDGLTGLPSPECVCARCTVTFQAPKTGLLHPEAKEYTG
HHHHHHHHHHHEEEEEECCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCCCCCCHHHHCC
RLHIRDIGIPPAIQNRYPTRLRRATCAVAALPPPPSAAMHKGTAGRVLVIGGSAGLCGAP
EEEEEECCCCCCCCCCCHHHHHHHHHEEEECCCCCCHHHCCCCCCEEEEEECCCCCCCHH
LLAAAGALRAGAGLVTVAVPARLEACVRHGNPDIMTLPLACGDDWAAFDARMLEGLDERY
HHHHHHHHHCCCCEEEEECHHHHHHHHHCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHC
DAVIVGNGMGRSAHAGEALAEILKTPRPPSVIDADALFHLRHPTQMLALMRETDILTPHP
CEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHCCHHHHHHHHHHCCCCCCCC
GEMAFLTGLTIEQVQADRLAALEMLTRRTAATCILKGAGTLVGSTQSFTAFIDAGGPSLA
CCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHEEECCCCEECCCCCEEEEEECCCCEEE
VGGSGDVLAGICAAFAAQGLGAFNAAAAAAFIHGKAGELLLQEFPLRGTTASEIADTIPR
ECCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHCCCCCCCHHHHHHHHHH
TRKELYHA
HHHHHCCC
>Mature Secondary Structure
MFLPLPTPQEMNRWDQAAVDEAGMPAEMLMENAAREAFRVLCGCFEKSSATGAHTAEDPA
CCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCH
WCLAEKRILCFMGGGNNGGDTAALARLLCGAGATVLVVHTRPLEDFRQEAAWHIERALQA
HHHCCCCEEEEECCCCCCCHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHHHHHHH
GVLFVQYDASCPAVIPAVLSTKELSNWNDDACPVPVMPDIVVDGLLGTGLRGEVSDSLLA
CEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHH
LIRHINALARTAFVFSLDIPSGMDGLTGLPSPECVCARCTVTFQAPKTGLLHPEAKEYTG
HHHHHHHHHHHEEEEEECCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCCCCCCHHHHCC
RLHIRDIGIPPAIQNRYPTRLRRATCAVAALPPPPSAAMHKGTAGRVLVIGGSAGLCGAP
EEEEEECCCCCCCCCCCHHHHHHHHHEEEECCCCCCHHHCCCCCCEEEEEECCCCCCCHH
LLAAAGALRAGAGLVTVAVPARLEACVRHGNPDIMTLPLACGDDWAAFDARMLEGLDERY
HHHHHHHHHCCCCEEEEECHHHHHHHHHCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHC
DAVIVGNGMGRSAHAGEALAEILKTPRPPSVIDADALFHLRHPTQMLALMRETDILTPHP
CEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHCCHHHHHHHHHHCCCCCCCC
GEMAFLTGLTIEQVQADRLAALEMLTRRTAATCILKGAGTLVGSTQSFTAFIDAGGPSLA
CCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHEEECCCCEECCCCCEEEEEECCCCEEE
VGGSGDVLAGICAAFAAQGLGAFNAAAAAAFIHGKAGELLLQEFPLRGTTASEIADTIPR
ECCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHCCCCCCCHHHHHHHHHH
TRKELYHA
HHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7610040; 9278503; 7511774 [H]