| Definition | Desulfovibrio desulfuricans subsp. desulfuricans str. G20 chromosome, complete genome. |
|---|---|
| Accession | NC_007519 |
| Length | 3,730,232 |
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The map label for this gene is hsdM [C]
Identifier: 78356904
GI number: 78356904
Start: 1912291
End: 1914423
Strand: Reverse
Name: hsdM [C]
Synonym: Dde_1861
Alternate gene names: 78356904
Gene position: 1914423-1912291 (Counterclockwise)
Preceding gene: 78356905
Following gene: 78356903
Centisome position: 51.32
GC content: 61.42
Gene sequence:
>2133_bases ATGAACCATGTGATCCACAACAGCATCGTAAATTTTATCTGGGGTATCGCCGACGACGTGCTGCGCGATGTTTATGTGCG CGGCAAGTACCGCGACGTGATCCTGCCGATGACGGTCATCCGCCGTCTCGACGCGCTCTTGGAGCCGAGCAAGGAAAAGG TGCTCGGCATGAAGAAGCAGCTCGACGGGGCCGGAATCGCCAACCAGCACGCCGCGCTCTGCCAGGCCGCAGGCGAGGCC TTTTACAACGTCTCGCCCTTTACCCTGCGCGACCTGAAGAACCGCGCCAAGCAACAACAGCTCAAGGCCGATTTCGAAGC TTATCTGGATGGCTTTTCACCCAATGTCCAGGAGATCCTCGACAAGTTCAAGTTTCGCAACCAGATCCCCACGTTGATCG AGGCCGACATCCTCGGCCACCTGATCGAGAAGTTTCTCGACGGCCGCGTCAATCTCAGCCCCAAGCCGGTGCGGGACGTG GACGGCAACGAGCTGCTTCCGGCCCTCGATAACCACTCCATGGGTACCATCTTCGAGGAGCTGATCCGCCGTTTCAACGA AGAGAACAACGAAGAGGCCGGGGAGCACTTCACGCCCCGCGACGTGGTCAAGCTCATGGCCGACCTGATCTTCCTGCCGG TGGCCGACGATATCGAGTCGGGCACCTACCTTGTCTATGACGGAGCCTGCGGCACCGGCGGAATGCTGACAGTTGCTGAA GAGCGCTTGGCCGAATTGGCCGAAAGCCACGGCAAGGACGTCTCCATTCACCTGTTCGGCCAGGAGGTGCAGCCGGAAAC CTACGCCATCTCCAAGGCCGACCTGCTGCTCAAAGGCGAAGGGGCCGAAGCGGAGAACATGAAGTACGGTTCCACGCTCT CCAGCGATGCCTTCCCGTCGCAGGAATTCGACTTCATGCTCTCCAATCCGCCCTACGGCAAGAGCTGGAAGACCGACCTG GAGCGCCTGGGCGGCAAGGGGGACATCAAGGACCCGCGCTTTGTCACTCAGCACGCAAACGACTCGGAATACAAGATGAT CACCCGCTCCTCGGACGGGCAGCTCATGTTCCTGGTCAACAAGCTCTCCAAGATGAAGCACAGCACCAAACTCGGCAGCC GCATCGCCGAGGTCCACAACGGCTCGTCGCTCTTCACCGGCGACGCCGGTCAGGGCGAGAGCAACATCCGCCGCTGGATC ATCGAGAACGACTGGCTGGAGGCCATCATCGCCCTGCCGGAGAACATGTTCTACAACACCGGCATCGCCACCTACATCTG GGTGCTGACCAACCGCAAGTCTGATACGCGGAAAGGCAAGGTCCAGCTCATCGACGCCAGCGAATGGTACGTGCCGCTGC GCCGCAATCTCGGCAAGAAAAATTGCGAACTCTCCGAAGAGCAGATTCAAACCATTGTCGATCTGGTGGTCAATCCCCGC GAGACCGAAAAATCCAAGATCTTCCCCAACGAGGCCTTCGGCTACTGGAAGGTGATTGTGGAACGGCCACTGCGCCTTGC CGTCGACCTGAGCCCGGCCCGGCTGGAACGGTTCGATCGGGCCTGCGCCCAGGCCAAGGAAGAACCGCTGGCCAAGCTGG CCCGCCGCGTGGCCGAGGCTCTTGGAGCCGGGCCGCACATCGATTTCAACGCCTTCATGGACGTCGCCCATGCCGATGCC GACAAGCACGGTGTCAAGCTCACTGCCAAGCGCAAGAAGCTGCTGCAGGGCGAACTTTGCGACACCCGCGAGGACGCCGC GCCGGTGCTGAAGAAGGTCCACAAGCCGGGTAAGGCCACGCCCGACCCCATCCACGGCCTGTTCGAGGCCGAACTGGGCG GCAAGCCCTGCGTGGTCGAATACGAGCCGGATACCGCCCTGCGCGACAGCGAACAGGTGCCGCTGCTGGAAGACGGCGGC ATCGAGGCCTTCTTCCGGCGCGAGGTGCTGCCCTACACCTCGGATGCCTGGATCGACCCGGGCAAGACGCTGGTGGGCTA CGAAATCTCCTTCACCCGCCATTTCTACCGGCCCGCGCCCATGCGCACCCTCGATGAGATCAAGGCCGATATCTACGCCC TGGAGCAGGAGACGGAAGGCCTTCTGGAACAGATTGTTGGGGAGGCGGAATGA
Upstream 100 bases:
>100_bases TTGGAAGTTCAAGAAAGATGAAGTGGACGAGTGGGTCAAGGCTGGCGGCGCGGCCGAGCCTGCGGAAACAGACAAGAAGC GCAAGGAGTAACAACGGGCT
Downstream 100 bases:
>100_bases TGAAGCTGGCTCCTTATCCAGAATACAAGGACGCGGGAGTAAGCTGGGTCGGGAGCATTCCCGCACATTGGCCTGAGAAG CGGGCAAAGTATTACTTCAA
Product: type I restriction-modification system specificity subunit
Products: NA
Alternate protein names: M.MjaXP [H]
Number of amino acids: Translated: 710; Mature: 710
Protein sequence:
>710_residues MNHVIHNSIVNFIWGIADDVLRDVYVRGKYRDVILPMTVIRRLDALLEPSKEKVLGMKKQLDGAGIANQHAALCQAAGEA FYNVSPFTLRDLKNRAKQQQLKADFEAYLDGFSPNVQEILDKFKFRNQIPTLIEADILGHLIEKFLDGRVNLSPKPVRDV DGNELLPALDNHSMGTIFEELIRRFNEENNEEAGEHFTPRDVVKLMADLIFLPVADDIESGTYLVYDGACGTGGMLTVAE ERLAELAESHGKDVSIHLFGQEVQPETYAISKADLLLKGEGAEAENMKYGSTLSSDAFPSQEFDFMLSNPPYGKSWKTDL ERLGGKGDIKDPRFVTQHANDSEYKMITRSSDGQLMFLVNKLSKMKHSTKLGSRIAEVHNGSSLFTGDAGQGESNIRRWI IENDWLEAIIALPENMFYNTGIATYIWVLTNRKSDTRKGKVQLIDASEWYVPLRRNLGKKNCELSEEQIQTIVDLVVNPR ETEKSKIFPNEAFGYWKVIVERPLRLAVDLSPARLERFDRACAQAKEEPLAKLARRVAEALGAGPHIDFNAFMDVAHADA DKHGVKLTAKRKKLLQGELCDTREDAAPVLKKVHKPGKATPDPIHGLFEAELGGKPCVVEYEPDTALRDSEQVPLLEDGG IEAFFRREVLPYTSDAWIDPGKTLVGYEISFTRHFYRPAPMRTLDEIKADIYALEQETEGLLEQIVGEAE
Sequences:
>Translated_710_residues MNHVIHNSIVNFIWGIADDVLRDVYVRGKYRDVILPMTVIRRLDALLEPSKEKVLGMKKQLDGAGIANQHAALCQAAGEA FYNVSPFTLRDLKNRAKQQQLKADFEAYLDGFSPNVQEILDKFKFRNQIPTLIEADILGHLIEKFLDGRVNLSPKPVRDV DGNELLPALDNHSMGTIFEELIRRFNEENNEEAGEHFTPRDVVKLMADLIFLPVADDIESGTYLVYDGACGTGGMLTVAE ERLAELAESHGKDVSIHLFGQEVQPETYAISKADLLLKGEGAEAENMKYGSTLSSDAFPSQEFDFMLSNPPYGKSWKTDL ERLGGKGDIKDPRFVTQHANDSEYKMITRSSDGQLMFLVNKLSKMKHSTKLGSRIAEVHNGSSLFTGDAGQGESNIRRWI IENDWLEAIIALPENMFYNTGIATYIWVLTNRKSDTRKGKVQLIDASEWYVPLRRNLGKKNCELSEEQIQTIVDLVVNPR ETEKSKIFPNEAFGYWKVIVERPLRLAVDLSPARLERFDRACAQAKEEPLAKLARRVAEALGAGPHIDFNAFMDVAHADA DKHGVKLTAKRKKLLQGELCDTREDAAPVLKKVHKPGKATPDPIHGLFEAELGGKPCVVEYEPDTALRDSEQVPLLEDGG IEAFFRREVLPYTSDAWIDPGKTLVGYEISFTRHFYRPAPMRTLDEIKADIYALEQETEGLLEQIVGEAE >Mature_710_residues MNHVIHNSIVNFIWGIADDVLRDVYVRGKYRDVILPMTVIRRLDALLEPSKEKVLGMKKQLDGAGIANQHAALCQAAGEA FYNVSPFTLRDLKNRAKQQQLKADFEAYLDGFSPNVQEILDKFKFRNQIPTLIEADILGHLIEKFLDGRVNLSPKPVRDV DGNELLPALDNHSMGTIFEELIRRFNEENNEEAGEHFTPRDVVKLMADLIFLPVADDIESGTYLVYDGACGTGGMLTVAE ERLAELAESHGKDVSIHLFGQEVQPETYAISKADLLLKGEGAEAENMKYGSTLSSDAFPSQEFDFMLSNPPYGKSWKTDL ERLGGKGDIKDPRFVTQHANDSEYKMITRSSDGQLMFLVNKLSKMKHSTKLGSRIAEVHNGSSLFTGDAGQGESNIRRWI IENDWLEAIIALPENMFYNTGIATYIWVLTNRKSDTRKGKVQLIDASEWYVPLRRNLGKKNCELSEEQIQTIVDLVVNPR ETEKSKIFPNEAFGYWKVIVERPLRLAVDLSPARLERFDRACAQAKEEPLAKLARRVAEALGAGPHIDFNAFMDVAHADA DKHGVKLTAKRKKLLQGELCDTREDAAPVLKKVHKPGKATPDPIHGLFEAELGGKPCVVEYEPDTALRDSEQVPLLEDGG IEAFFRREVLPYTSDAWIDPGKTLVGYEISFTRHFYRPAPMRTLDEIKADIYALEQETEGLLEQIVGEAE
Specific function: Methylation of specific adenine residues; required for both restriction and modification activities [H]
COG id: COG0286
COG function: function code V; Type I restriction-modification system methyltransferase subunit
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the N(4)/N(6)-methyltransferase family [H]
Homologues:
Organism=Escherichia coli, GI1790808, Length=414, Percent_Identity=23.9130434782609, Blast_Score=70, Evalue=4e-13,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR022749 - InterPro: IPR003356 - InterPro: IPR002052 - InterPro: IPR002296 [H]
Pfam domain/function: PF12161 HsdM_N; PF02384 N6_Mtase [H]
EC number: =2.1.1.72 [H]
Molecular weight: Translated: 79716; Mature: 79716
Theoretical pI: Translated: 5.10; Mature: 5.10
Prosite motif: PS00092 N6_MTASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNHVIHNSIVNFIWGIADDVLRDVYVRGKYRDVILPMTVIRRLDALLEPSKEKVLGMKKQ CCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH LDGAGIANQHAALCQAAGEAFYNVSPFTLRDLKNRAKQQQLKADFEAYLDGFSPNVQEIL CCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHH DKFKFRNQIPTLIEADILGHLIEKFLDGRVNLSPKPVRDVDGNELLPALDNHSMGTIFEE HHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH LIRRFNEENNEEAGEHFTPRDVVKLMADLIFLPVADDIESGTYLVYDGACGTGGMLTVAE HHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCHHHHH ERLAELAESHGKDVSIHLFGQEVQPETYAISKADLLLKGEGAEAENMKYGSTLSSDAFPS HHHHHHHHHCCCEEEEEEECCCCCCCCEEEECCCEEEECCCCCCCCCCCCCCCCCCCCCC QEFDFMLSNPPYGKSWKTDLERLGGKGDIKDPRFVTQHANDSEYKMITRSSDGQLMFLVN CCCCEEECCCCCCCCHHHHHHHCCCCCCCCCCCEEECCCCCCCEEEEEECCCCCEEHHHH KLSKMKHSTKLGSRIAEVHNGSSLFTGDAGQGESNIRRWIIENDWLEAIIALPENMFYNT HHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHEEEECHHHHHHHHHCCHHHHHCC GIATYIWVLTNRKSDTRKGKVQLIDASEWYVPLRRNLGKKNCELSEEQIQTIVDLVVNPR CCEEEEEEEECCCCCCCCCCEEEEECCCCCHHHHHCCCCCCCCCCHHHHHHHHHHHCCCC ETEKSKIFPNEAFGYWKVIVERPLRLAVDLSPARLERFDRACAQAKEEPLAKLARRVAEA CCCCCCCCCCHHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LGAGPHIDFNAFMDVAHADADKHGVKLTAKRKKLLQGELCDTREDAAPVLKKVHKPGKAT HCCCCCCCHHHHHHHHHCCCCCCCEEEEHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCC PDPIHGLFEAELGGKPCVVEYEPDTALRDSEQVPLLEDGGIEAFFRREVLPYTSDAWIDP CCHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCEECCCCCHHHHHHCCCCCCCCCCCCC GKTLVGYEISFTRHFYRPAPMRTLDEIKADIYALEQETEGLLEQIVGEAE CCEEEEEEEEHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC >Mature Secondary Structure MNHVIHNSIVNFIWGIADDVLRDVYVRGKYRDVILPMTVIRRLDALLEPSKEKVLGMKKQ CCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH LDGAGIANQHAALCQAAGEAFYNVSPFTLRDLKNRAKQQQLKADFEAYLDGFSPNVQEIL CCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHH DKFKFRNQIPTLIEADILGHLIEKFLDGRVNLSPKPVRDVDGNELLPALDNHSMGTIFEE HHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH LIRRFNEENNEEAGEHFTPRDVVKLMADLIFLPVADDIESGTYLVYDGACGTGGMLTVAE HHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCHHHHH ERLAELAESHGKDVSIHLFGQEVQPETYAISKADLLLKGEGAEAENMKYGSTLSSDAFPS HHHHHHHHHCCCEEEEEEECCCCCCCCEEEECCCEEEECCCCCCCCCCCCCCCCCCCCCC QEFDFMLSNPPYGKSWKTDLERLGGKGDIKDPRFVTQHANDSEYKMITRSSDGQLMFLVN CCCCEEECCCCCCCCHHHHHHHCCCCCCCCCCCEEECCCCCCCEEEEEECCCCCEEHHHH KLSKMKHSTKLGSRIAEVHNGSSLFTGDAGQGESNIRRWIIENDWLEAIIALPENMFYNT HHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHEEEECHHHHHHHHHCCHHHHHCC GIATYIWVLTNRKSDTRKGKVQLIDASEWYVPLRRNLGKKNCELSEEQIQTIVDLVVNPR CCEEEEEEEECCCCCCCCCCEEEEECCCCCHHHHHCCCCCCCCCCHHHHHHHHHHHCCCC ETEKSKIFPNEAFGYWKVIVERPLRLAVDLSPARLERFDRACAQAKEEPLAKLARRVAEA CCCCCCCCCCHHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LGAGPHIDFNAFMDVAHADADKHGVKLTAKRKKLLQGELCDTREDAAPVLKKVHKPGKAT HCCCCCCCHHHHHHHHHCCCCCCCEEEEHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCC PDPIHGLFEAELGGKPCVVEYEPDTALRDSEQVPLLEDGGIEAFFRREVLPYTSDAWIDP CCHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCEECCCCCHHHHHHCCCCCCCCCCCCC GKTLVGYEISFTRHFYRPAPMRTLDEIKADIYALEQETEGLLEQIVGEAE CCEEEEEEEEHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8688087 [H]