Click here to switch to the map view.

The map label for this gene is 78356903

Identifier: 78356903

GI number: 78356903

Start: 1910870

End: 1912294

Strand: Reverse

Name: 78356903

Synonym: Dde_1860

Alternate gene names: NA

Gene position: 1912294-1910870 (Counterclockwise)

Preceding gene: 78356904

Following gene: 78356902

Centisome position: 51.26

GC content: 56.7

Gene sequence:

>1425_bases
ATGATGAAGCTGGCTCCTTATCCAGAATACAAGGACGCGGGAGTAAGCTGGGTCGGGAGCATTCCCGCACATTGGCCTGA
GAAGCGGGCAAAGTATTACTTCAAAGAGATTGATGATCGCTCCCAGACAGGCGATGAGGAAATGCTCTCGGTGTCTCACA
TCACCGGAGTGACTCCCCGCAGCCAGAAGAACGTGACCATGTTCAAGGCCGAGTCGAATGTCGGTCAGAAACGTTGCCAA
CCCGGCGATCTGATCATCAATACGATGTGGGCCTGGATGTCTGCATTGGGCGTCTCGAACCATGCTGGAATTGTGAGTCC
CGCCTATGGCGTTTACCGGCCAAGAAGCAACCAGGATTACGACTACTACTATCTCGACAGCCTGTTGCGGATTGAAGGAT
ATCGGTCGGAATACATTTGCCGGTCAACGGGCATTCGTTCTTCCCGGCTCAGGCTCTATCCCGATAAATTTCTGAGCATG
CCGGTGGTCTGCCCTCCGCAGGAAGAGCAGCAAACCATCGCACGATTCCTGAAGGCGCAAGACCGCTTGTTCCGAAAATT
TATCCGCAACAAGCGGCGATTCATTGAACTTCTCAAGGAGCAGAAGCAGAACGTCATCAACCAGGCCGTGACCCGGGGGC
TTGATCCCAAGGTCCAGTTCAAGCCCAGCGGCGTGGAATGGATCGGAGATATTCCGGAGCATTGGGACGCCAGACGGCTC
CGCACGCTGGCGGCGGTCAGGGCCAGTGGCGTCGACAAGAACACGAACGAGGACGAAGTCCCGGTCATGCTCTGCAACTA
CGTGGACGTTTACAAGAACGACCGCATCACCGCCGCCATCGATTTCATGAAGGCCACGGCCACGCCGGAAGAGATTCGCG
CTTTTGAGCTGAAAGCGGGTGACGTGATCATCACCAAGGATTCCGAAAGTTGGGACGACATCGCCATTCCCACTTTCGTG
CCCGAGACAATTCCGGGCGTCGTTTGTGCCTATCACTTGGCCTTGATCAGACCGTTCTCAGGTGAAATCGAAGGCGAGTT
TCTGTTCAGGGCATTCTCTTCCGACCCGGTGGCTGACCAGTTCCGGATTGCCGCTACCGGCGTGACCCGCTTTGGCTTGG
CGCAAGGTGCAATCAAGGGGGCGTTCTTCCCGCTCCCGCCGTTGGAGGAACAGCGGGCGATTATTGCTCACATCAATGAG
AAGTGCGCCGAGATAAGCCAGGCGATTTCAAGGGCCGAGCGTGAGATCGAGCTGATGCGCGAATACCGCACCCGGCTGAT
TTCCGATGTGGTCACCGGGCAGGTGGATGTCCGCGGAATCGAGGTGCCGGAGGTTGCCGATGAAGAGCTGCTGGCGCTGG
AAGAGGACACCGCCGATGCCGATGACGTGATCGATGATGAGGGGGACATGGATGAAACCGACTGA

Upstream 100 bases:

>100_bases
GGCCCGCGCCCATGCGCACCCTCGATGAGATCAAGGCCGATATCTACGCCCTGGAGCAGGAGACGGAAGGCCTTCTGGAA
CAGATTGTTGGGGAGGCGGA

Downstream 100 bases:

>100_bases
CACCAGCGAAAAGGGCCTGGAATCGATTATCGTCGCCTCCCTTGTGGAGGATGCCGGATACGTTCAGGGTGATCCGCAGG
ACTACGACCGGGAACACGCT

Product: type I restriction enzyme, S subunit

Products: NA

Alternate protein names: Restriction System DNA Specificity Domain Protein; Type I Restriction- System Specificity Determinant; Type I Restriction- System Specificity Subunit; Restriction Endonuclease S Subunit; Type I Restriction- System S Subunit; Type I Restriction S Subunit; Type I Restriction- System; Type I Site-Specific Restriction- System S Subunit; Type I Restriction-; Type I Restriction Specificity Protein; Restriction System DNA Specificity Domain; Type I Restriction- System Specifity Subunit; Restriction Endonuclease S Subunits-Like; Type I Restriction System DNA Specificity Domain Protein; Type I Restriction S Protein; Type I Restriction DNA Specificity Protein; Type I DNA Specificity S Subunit; Type I Restriction- Methylase S Subunit; Type I Restriction-Mod; Type I Restriction System Specificity Protein HsdS; Type I Restriction- System Subunit S; Type I Restriction DNA Specificity Domain Protein; Type I Restriction- System Specificity Subunit S; Type I Restriction; Restriction Endonuclease S Subunits-Like Protein; Type I Restriction- System Specificity Protein; Type 1 Restriction- System Endonuclease Subunit; Type I Site-Specific Deoxyribonuclease; Restriction Endonuclease S Subunits

Number of amino acids: Translated: 474; Mature: 474

Protein sequence:

>474_residues
MMKLAPYPEYKDAGVSWVGSIPAHWPEKRAKYYFKEIDDRSQTGDEEMLSVSHITGVTPRSQKNVTMFKAESNVGQKRCQ
PGDLIINTMWAWMSALGVSNHAGIVSPAYGVYRPRSNQDYDYYYLDSLLRIEGYRSEYICRSTGIRSSRLRLYPDKFLSM
PVVCPPQEEQQTIARFLKAQDRLFRKFIRNKRRFIELLKEQKQNVINQAVTRGLDPKVQFKPSGVEWIGDIPEHWDARRL
RTLAAVRASGVDKNTNEDEVPVMLCNYVDVYKNDRITAAIDFMKATATPEEIRAFELKAGDVIITKDSESWDDIAIPTFV
PETIPGVVCAYHLALIRPFSGEIEGEFLFRAFSSDPVADQFRIAATGVTRFGLAQGAIKGAFFPLPPLEEQRAIIAHINE
KCAEISQAISRAEREIELMREYRTRLISDVVTGQVDVRGIEVPEVADEELLALEEDTADADDVIDDEGDMDETD

Sequences:

>Translated_474_residues
MMKLAPYPEYKDAGVSWVGSIPAHWPEKRAKYYFKEIDDRSQTGDEEMLSVSHITGVTPRSQKNVTMFKAESNVGQKRCQ
PGDLIINTMWAWMSALGVSNHAGIVSPAYGVYRPRSNQDYDYYYLDSLLRIEGYRSEYICRSTGIRSSRLRLYPDKFLSM
PVVCPPQEEQQTIARFLKAQDRLFRKFIRNKRRFIELLKEQKQNVINQAVTRGLDPKVQFKPSGVEWIGDIPEHWDARRL
RTLAAVRASGVDKNTNEDEVPVMLCNYVDVYKNDRITAAIDFMKATATPEEIRAFELKAGDVIITKDSESWDDIAIPTFV
PETIPGVVCAYHLALIRPFSGEIEGEFLFRAFSSDPVADQFRIAATGVTRFGLAQGAIKGAFFPLPPLEEQRAIIAHINE
KCAEISQAISRAEREIELMREYRTRLISDVVTGQVDVRGIEVPEVADEELLALEEDTADADDVIDDEGDMDETD
>Mature_474_residues
MMKLAPYPEYKDAGVSWVGSIPAHWPEKRAKYYFKEIDDRSQTGDEEMLSVSHITGVTPRSQKNVTMFKAESNVGQKRCQ
PGDLIINTMWAWMSALGVSNHAGIVSPAYGVYRPRSNQDYDYYYLDSLLRIEGYRSEYICRSTGIRSSRLRLYPDKFLSM
PVVCPPQEEQQTIARFLKAQDRLFRKFIRNKRRFIELLKEQKQNVINQAVTRGLDPKVQFKPSGVEWIGDIPEHWDARRL
RTLAAVRASGVDKNTNEDEVPVMLCNYVDVYKNDRITAAIDFMKATATPEEIRAFELKAGDVIITKDSESWDDIAIPTFV
PETIPGVVCAYHLALIRPFSGEIEGEFLFRAFSSDPVADQFRIAATGVTRFGLAQGAIKGAFFPLPPLEEQRAIIAHINE
KCAEISQAISRAEREIELMREYRTRLISDVVTGQVDVRGIEVPEVADEELLALEEDTADADDVIDDEGDMDETD

Specific function: Unknown

COG id: COG0732

COG function: function code V; Restriction endonuclease S subunits

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 53782; Mature: 53782

Theoretical pI: Translated: 4.78; Mature: 4.78

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMKLAPYPEYKDAGVSWVGSIPAHWPEKRAKYYFKEIDDRSQTGDEEMLSVSHITGVTPR
CCCCCCCCCCCCCCCEEECCCCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCC
SQKNVTMFKAESNVGQKRCQPGDLIINTMWAWMSALGVSNHAGIVSPAYGVYRPRSNQDY
CCCCEEEEEECCCCCHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC
DYYYLDSLLRIEGYRSEYICRSTGIRSSRLRLYPDKFLSMPVVCPPQEEQQTIARFLKAQ
CHHHHHHHHHHCCCCHHHHHHHCCCCCCCEEECCHHHCCCCCCCCCCHHHHHHHHHHHHH
DRLFRKFIRNKRRFIELLKEQKQNVINQAVTRGLDPKVQFKPSGVEWIGDIPEHWDARRL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHCCCCCHHHHHHH
RTLAAVRASGVDKNTNEDEVPVMLCNYVDVYKNDRITAAIDFMKATATPEEIRAFELKAG
HHHHHHHHCCCCCCCCCCCCCEEEECHHHHHCCCCEEEHHHHHHHCCCHHHHEEEEEECC
DVIITKDSESWDDIAIPTFVPETIPGVVCAYHLALIRPFSGEIEGEFLFRAFSSDPVADQ
CEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCHH
FRIAATGVTRFGLAQGAIKGAFFPLPPLEEQRAIIAHINEKCAEISQAISRAEREIELMR
EEEEECCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EYRTRLISDVVTGQVDVRGIEVPEVADEELLALEEDTADADDVIDDEGDMDETD
HHHHHHHHHHHCCCEEEECCCCCCCCCCHHHEECCCCCCCHHCCCCCCCCCCCC
>Mature Secondary Structure
MMKLAPYPEYKDAGVSWVGSIPAHWPEKRAKYYFKEIDDRSQTGDEEMLSVSHITGVTPR
CCCCCCCCCCCCCCCEEECCCCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCC
SQKNVTMFKAESNVGQKRCQPGDLIINTMWAWMSALGVSNHAGIVSPAYGVYRPRSNQDY
CCCCEEEEEECCCCCHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC
DYYYLDSLLRIEGYRSEYICRSTGIRSSRLRLYPDKFLSMPVVCPPQEEQQTIARFLKAQ
CHHHHHHHHHHCCCCHHHHHHHCCCCCCCEEECCHHHCCCCCCCCCCHHHHHHHHHHHHH
DRLFRKFIRNKRRFIELLKEQKQNVINQAVTRGLDPKVQFKPSGVEWIGDIPEHWDARRL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHCCCCCHHHHHHH
RTLAAVRASGVDKNTNEDEVPVMLCNYVDVYKNDRITAAIDFMKATATPEEIRAFELKAG
HHHHHHHHCCCCCCCCCCCCCEEEECHHHHHCCCCEEEHHHHHHHCCCHHHHEEEEEECC
DVIITKDSESWDDIAIPTFVPETIPGVVCAYHLALIRPFSGEIEGEFLFRAFSSDPVADQ
CEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCHH
FRIAATGVTRFGLAQGAIKGAFFPLPPLEEQRAIIAHINEKCAEISQAISRAEREIELMR
EEEEECCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EYRTRLISDVVTGQVDVRGIEVPEVADEELLALEEDTADADDVIDDEGDMDETD
HHHHHHHHHHHCCCEEEECCCCCCCCCCHHHEECCCCCCCHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA