BacMap

Definition	Desulfovibrio desulfuricans subsp. desulfuricans str. G20 chromosome, complete genome.
Accession	NC_007519
Length	3,730,232

Click here to switch to the map view.

The map label for this gene is cbpA [H]

Identifier: 78356702

GI number: 78356702

Start: 1711529

End: 1712476

Strand: Direct

Name: cbpA [H]

Synonym: Dde_1659

Alternate gene names: 78356702

Gene position: 1711529-1712476 (Clockwise)

Preceding gene: 78356700

Following gene: 78356703

Centisome position: 45.88

GC content: 58.02

Gene sequence:

>948_bases
ATGGGAGTTGAATACAAGGACTACTACAAGCTGCTGGGCGTGTCGCGCAGTGCCTCGAAAGAGGAGATAGCCAAAGCCTA
CAAAAAGATGGCCCGCAAATATCATCCGGATCTTAATCCGAATGACCCTGATGCGGAGGCCAGATTCAAGGAGGTGAACG
AGGCGCACGAGGTGCTGAAAGACGAGGAAAAGCGTCGTCTTTATGACCAGCTCGGACCGGACTGGCAGCACGGCCAGAGC
TTTCAGGGCGCGCAGGGCCACAGGTACGCCAATTTCGGCGGAGGGGCCGGTTTTGATTCCTCGGGATTCAGCGACTTTTT
CGATATGATTTTCGGCAATGCCGGTGCAGGAGGCTACAGGCACTCTTCAGGCTTCGGGCCTGATCCGTTCGGTAATTTTT
CAGCCAGGCAGCGCAAGGGGCGCGATGTGGAGGCACAGCTTACCCTGACCCTTGAAGAAGCACTGAAAGGCGGGAAAAAA
TCGCTTACCCTGCAGGGACAGGGAGGCGGTGATTCCAGACGGCTGGAGGTGTCAATTCCTGCCGGTGTACGTGAAGGTGC
AAAAATCCGGCTTTCCGGCCAGGGGGACCCCGGCATGGGCGGCGGCCCCGCAGGAGACCTGTACCTGCGTGTCAGGCTGG
CTGAACATCCTGTTTTTCATGTTGATGGCAGTGATGTGCTTGTGGATGTATATGTGGCTCCGTGGGAGGCTGTGCTGGGT
GCCGCAGTGCGTGTACCCACGCTGGATGGCGAAGTGCAGCTGAAAATTGCTCCCGGTACGGGCAGCGGCAAAAAACTGCG
GCTGCGCGGCAAGGGGCTGGGACCCGCAGCATCCCGCGGGGACCAGTATGTGAGGATTCAGATACGTGTACCGGAGAACC
CATCTCCGGAAGAACGCGAACTGTGGGAAAAGCTGGCGGCTGTTTCAGGTTTCAACCCAAGACCCTGA

Upstream 100 bases:

>100_bases
GCTGATTAATACGGATTACTTGAAATAACGAGGCCGTCGACGGTTGCAGACCGCAGGATGGCCGCATCATCAGGATGCTG
TCAAAGGAGAGCTATACGAG

Downstream 100 bases:

>100_bases
TCAACGAAAAGCGGAACGCACGAGGAGACGCGCCATGACTGTTAACAGGCATTCCGGAGACTTACCTATCCGATCGGAAT
ATATCGCATGGGCCGAGTTT

Product: heat shock protein DnaJ-like

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 315; Mature: 314

Protein sequence:

>315_residues
MGVEYKDYYKLLGVSRSASKEEIAKAYKKMARKYHPDLNPNDPDAEARFKEVNEAHEVLKDEEKRRLYDQLGPDWQHGQS
FQGAQGHRYANFGGGAGFDSSGFSDFFDMIFGNAGAGGYRHSSGFGPDPFGNFSARQRKGRDVEAQLTLTLEEALKGGKK
SLTLQGQGGGDSRRLEVSIPAGVREGAKIRLSGQGDPGMGGGPAGDLYLRVRLAEHPVFHVDGSDVLVDVYVAPWEAVLG
AAVRVPTLDGEVQLKIAPGTGSGKKLRLRGKGLGPAASRGDQYVRIQIRVPENPSPEERELWEKLAAVSGFNPRP

Sequences:

>Translated_315_residues
MGVEYKDYYKLLGVSRSASKEEIAKAYKKMARKYHPDLNPNDPDAEARFKEVNEAHEVLKDEEKRRLYDQLGPDWQHGQS
FQGAQGHRYANFGGGAGFDSSGFSDFFDMIFGNAGAGGYRHSSGFGPDPFGNFSARQRKGRDVEAQLTLTLEEALKGGKK
SLTLQGQGGGDSRRLEVSIPAGVREGAKIRLSGQGDPGMGGGPAGDLYLRVRLAEHPVFHVDGSDVLVDVYVAPWEAVLG
AAVRVPTLDGEVQLKIAPGTGSGKKLRLRGKGLGPAASRGDQYVRIQIRVPENPSPEERELWEKLAAVSGFNPRP
>Mature_314_residues
GVEYKDYYKLLGVSRSASKEEIAKAYKKMARKYHPDLNPNDPDAEARFKEVNEAHEVLKDEEKRRLYDQLGPDWQHGQSF
QGAQGHRYANFGGGAGFDSSGFSDFFDMIFGNAGAGGYRHSSGFGPDPFGNFSARQRKGRDVEAQLTLTLEEALKGGKKS
LTLQGQGGGDSRRLEVSIPAGVREGAKIRLSGQGDPGMGGGPAGDLYLRVRLAEHPVFHVDGSDVLVDVYVAPWEAVLGA
AVRVPTLDGEVQLKIAPGTGSGKKLRLRGKGLGPAASRGDQYVRIQIRVPENPSPEERELWEKLAAVSGFNPRP

Specific function: DNA-binding protein that preferentially recognizes a curved DNA sequence. It is probably a functional analog of DnaJ; displays overlapping activities with DnaJ, but functions under different conditions, probably acting as a molecular chaperone in an adapt

COG id: COG2214

COG function: function code O; DnaJ-class molecular chaperone

Gene ontology:

Cell location: Cytoplasm, nucleoid [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 J domain [H]

Homologues:

Organism=Homo sapiens, GI56549115, Length=350, Percent_Identity=31.1428571428571, Blast_Score=140, Evalue=1e-33,
Organism=Homo sapiens, GI201862518, Length=355, Percent_Identity=30.9859154929577, Blast_Score=140, Evalue=2e-33,
Organism=Homo sapiens, GI201862587, Length=359, Percent_Identity=31.1977715877437, Blast_Score=140, Evalue=2e-33,
Organism=Homo sapiens, GI205360838, Length=348, Percent_Identity=29.5977011494253, Blast_Score=139, Evalue=5e-33,
Organism=Homo sapiens, GI205360840, Length=348, Percent_Identity=29.5977011494253, Blast_Score=138, Evalue=6e-33,
Organism=Homo sapiens, GI6631085, Length=341, Percent_Identity=31.3782991202346, Blast_Score=137, Evalue=2e-32,
Organism=Homo sapiens, GI5453690, Length=345, Percent_Identity=29.8550724637681, Blast_Score=126, Evalue=3e-29,
Organism=Homo sapiens, GI7706495, Length=287, Percent_Identity=31.7073170731707, Blast_Score=116, Evalue=3e-26,
Organism=Homo sapiens, GI39204547, Length=325, Percent_Identity=26.1538461538462, Blast_Score=100, Evalue=2e-21,
Organism=Homo sapiens, GI194328758, Length=163, Percent_Identity=38.0368098159509, Blast_Score=88, Evalue=1e-17,
Organism=Homo sapiens, GI194328760, Length=163, Percent_Identity=38.0368098159509, Blast_Score=88, Evalue=1e-17,
Organism=Homo sapiens, GI4504511, Length=204, Percent_Identity=34.3137254901961, Blast_Score=87, Evalue=1e-17,
Organism=Homo sapiens, GI9558755, Length=132, Percent_Identity=40.9090909090909, Blast_Score=87, Evalue=2e-17,
Organism=Homo sapiens, GI24308127, Length=67, Percent_Identity=55.2238805970149, Blast_Score=83, Evalue=3e-16,
Organism=Homo sapiens, GI194306642, Length=109, Percent_Identity=44.0366972477064, Blast_Score=82, Evalue=5e-16,
Organism=Homo sapiens, GI194306640, Length=109, Percent_Identity=44.0366972477064, Blast_Score=82, Evalue=5e-16,
Organism=Homo sapiens, GI23503241, Length=108, Percent_Identity=46.2962962962963, Blast_Score=81, Evalue=1e-15,
Organism=Homo sapiens, GI21553335, Length=69, Percent_Identity=56.5217391304348, Blast_Score=79, Evalue=4e-15,
Organism=Homo sapiens, GI29126218, Length=64, Percent_Identity=53.125, Blast_Score=79, Evalue=4e-15,
Organism=Homo sapiens, GI4885495, Length=65, Percent_Identity=58.4615384615385, Blast_Score=79, Evalue=7e-15,
Organism=Homo sapiens, GI56687498, Length=99, Percent_Identity=46.4646464646465, Blast_Score=79, Evalue=7e-15,
Organism=Homo sapiens, GI17388799, Length=65, Percent_Identity=58.4615384615385, Blast_Score=78, Evalue=9e-15,
Organism=Homo sapiens, GI45504382, Length=64, Percent_Identity=48.4375, Blast_Score=78, Evalue=1e-14,
Organism=Homo sapiens, GI47777312, Length=67, Percent_Identity=58.2089552238806, Blast_Score=77, Evalue=2e-14,
Organism=Homo sapiens, GI27151736, Length=147, Percent_Identity=36.734693877551, Blast_Score=76, Evalue=4e-14,
Organism=Homo sapiens, GI88501736, Length=147, Percent_Identity=36.734693877551, Blast_Score=75, Evalue=6e-14,
Organism=Homo sapiens, GI72534740, Length=117, Percent_Identity=37.6068376068376, Blast_Score=69, Evalue=5e-12,
Organism=Homo sapiens, GI5031741, Length=64, Percent_Identity=53.125, Blast_Score=68, Evalue=9e-12,
Organism=Escherichia coli, GI1787235, Length=324, Percent_Identity=41.358024691358, Blast_Score=227, Evalue=9e-61,
Organism=Escherichia coli, GI1786197, Length=367, Percent_Identity=31.0626702997275, Blast_Score=136, Evalue=1e-33,
Organism=Caenorhabditis elegans, GI17534355, Length=337, Percent_Identity=31.4540059347181, Blast_Score=132, Evalue=3e-31,
Organism=Caenorhabditis elegans, GI115532378, Length=93, Percent_Identity=47.3118279569892, Blast_Score=81, Evalue=8e-16,
Organism=Caenorhabditis elegans, GI17554644, Length=67, Percent_Identity=56.7164179104478, Blast_Score=80, Evalue=2e-15,
Organism=Caenorhabditis elegans, GI17553096, Length=148, Percent_Identity=31.0810810810811, Blast_Score=74, Evalue=9e-14,
Organism=Caenorhabditis elegans, GI17553098, Length=148, Percent_Identity=31.0810810810811, Blast_Score=74, Evalue=9e-14,
Organism=Caenorhabditis elegans, GI212645553, Length=69, Percent_Identity=44.9275362318841, Blast_Score=73, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI17507263, Length=63, Percent_Identity=53.968253968254, Blast_Score=73, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI17551190, Length=79, Percent_Identity=53.1645569620253, Blast_Score=70, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI17568643, Length=65, Percent_Identity=47.6923076923077, Blast_Score=68, Evalue=5e-12,
Organism=Caenorhabditis elegans, GI17510335, Length=68, Percent_Identity=54.4117647058823, Blast_Score=65, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI17554900, Length=65, Percent_Identity=44.6153846153846, Blast_Score=65, Evalue=5e-11,
Organism=Saccharomyces cerevisiae, GI6324265, Length=165, Percent_Identity=36.3636363636364, Blast_Score=80, Evalue=3e-16,
Organism=Saccharomyces cerevisiae, GI6323813, Length=141, Percent_Identity=40.4255319148936, Blast_Score=76, Evalue=6e-15,
Organism=Saccharomyces cerevisiae, GI6323870, Length=69, Percent_Identity=44.9275362318841, Blast_Score=75, Evalue=1e-14,
Organism=Saccharomyces cerevisiae, GI6322194, Length=91, Percent_Identity=46.1538461538462, Blast_Score=74, Evalue=3e-14,
Organism=Saccharomyces cerevisiae, GI6320888, Length=106, Percent_Identity=41.5094339622642, Blast_Score=72, Evalue=8e-14,
Organism=Saccharomyces cerevisiae, GI6321094, Length=152, Percent_Identity=28.9473684210526, Blast_Score=70, Evalue=4e-13,
Organism=Saccharomyces cerevisiae, GI6322388, Length=99, Percent_Identity=42.4242424242424, Blast_Score=67, Evalue=3e-12,
Organism=Saccharomyces cerevisiae, GI6324252, Length=64, Percent_Identity=46.875, Blast_Score=66, Evalue=9e-12,
Organism=Drosophila melanogaster, GI85726398, Length=356, Percent_Identity=31.4606741573034, Blast_Score=134, Evalue=7e-32,
Organism=Drosophila melanogaster, GI24658562, Length=340, Percent_Identity=31.7647058823529, Blast_Score=130, Evalue=2e-30,
Organism=Drosophila melanogaster, GI24658555, Length=340, Percent_Identity=31.7647058823529, Blast_Score=130, Evalue=2e-30,
Organism=Drosophila melanogaster, GI45549272, Length=371, Percent_Identity=28.8409703504043, Blast_Score=128, Evalue=6e-30,
Organism=Drosophila melanogaster, GI45552813, Length=371, Percent_Identity=28.8409703504043, Blast_Score=127, Evalue=8e-30,
Organism=Drosophila melanogaster, GI45552811, Length=372, Percent_Identity=28.494623655914, Blast_Score=126, Evalue=2e-29,
Organism=Drosophila melanogaster, GI18858081, Length=354, Percent_Identity=30.225988700565, Blast_Score=108, Evalue=6e-24,
Organism=Drosophila melanogaster, GI19920464, Length=348, Percent_Identity=23.8505747126437, Blast_Score=97, Evalue=2e-20,
Organism=Drosophila melanogaster, GI24654066, Length=84, Percent_Identity=54.7619047619048, Blast_Score=90, Evalue=2e-18,
Organism=Drosophila melanogaster, GI24654070, Length=84, Percent_Identity=54.7619047619048, Blast_Score=90, Evalue=2e-18,
Organism=Drosophila melanogaster, GI24654068, Length=84, Percent_Identity=54.7619047619048, Blast_Score=90, Evalue=2e-18,
Organism=Drosophila melanogaster, GI24654072, Length=84, Percent_Identity=54.7619047619048, Blast_Score=90, Evalue=2e-18,
Organism=Drosophila melanogaster, GI20129487, Length=362, Percent_Identity=26.2430939226519, Blast_Score=86, Evalue=4e-17,
Organism=Drosophila melanogaster, GI24584014, Length=362, Percent_Identity=26.2430939226519, Blast_Score=86, Evalue=4e-17,
Organism=Drosophila melanogaster, GI161077138, Length=64, Percent_Identity=59.375, Blast_Score=82, Evalue=6e-16,
Organism=Drosophila melanogaster, GI24668492, Length=67, Percent_Identity=56.7164179104478, Blast_Score=79, Evalue=3e-15,
Organism=Drosophila melanogaster, GI17737735, Length=64, Percent_Identity=50, Blast_Score=79, Evalue=4e-15,
Organism=Drosophila melanogaster, GI28574723, Length=64, Percent_Identity=50, Blast_Score=79, Evalue=5e-15,
Organism=Drosophila melanogaster, GI24668523, Length=64, Percent_Identity=50, Blast_Score=79, Evalue=5e-15,
Organism=Drosophila melanogaster, GI21355911, Length=102, Percent_Identity=46.078431372549, Blast_Score=74, Evalue=1e-13,
Organism=Drosophila melanogaster, GI24646562, Length=63, Percent_Identity=49.2063492063492, Blast_Score=69, Evalue=3e-12,
Organism=Drosophila melanogaster, GI24646560, Length=63, Percent_Identity=49.2063492063492, Blast_Score=69, Evalue=3e-12,
Organism=Drosophila melanogaster, GI24646558, Length=63, Percent_Identity=49.2063492063492, Blast_Score=69, Evalue=3e-12,
Organism=Drosophila melanogaster, GI24646556, Length=63, Percent_Identity=49.2063492063492, Blast_Score=69, Evalue=3e-12,
Organism=Drosophila melanogaster, GI21357547, Length=63, Percent_Identity=49.2063492063492, Blast_Score=69, Evalue=3e-12,
Organism=Drosophila melanogaster, GI24641698, Length=64, Percent_Identity=51.5625, Blast_Score=69, Evalue=3e-12,
Organism=Drosophila melanogaster, GI24641696, Length=64, Percent_Identity=51.5625, Blast_Score=69, Evalue=3e-12,
Organism=Drosophila melanogaster, GI17648033, Length=107, Percent_Identity=42.0560747663551, Blast_Score=67, Evalue=2e-11,
Organism=Drosophila melanogaster, GI24584630, Length=107, Percent_Identity=42.0560747663551, Blast_Score=66, Evalue=3e-11,
Organism=Drosophila melanogaster, GI24651436, Length=65, Percent_Identity=46.1538461538462, Blast_Score=65, Evalue=4e-11,
Organism=Drosophila melanogaster, GI18859921, Length=71, Percent_Identity=49.2957746478873, Blast_Score=65, Evalue=5e-11,
Organism=Drosophila melanogaster, GI21358311, Length=65, Percent_Identity=46.1538461538462, Blast_Score=65, Evalue=6e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002939
- InterPro:   IPR001623
- InterPro:   IPR018253
- InterPro:   IPR008971
- InterPro:   IPR015609
- InterPro:   IPR003095 [H]

Pfam domain/function: PF00226 DnaJ; PF01556 DnaJ_C [H]

EC number: NA

Molecular weight: Translated: 34182; Mature: 34050

Theoretical pI: Translated: 9.06; Mature: 9.06

Prosite motif: PS00636 DNAJ_1 ; PS50076 DNAJ_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGVEYKDYYKLLGVSRSASKEEIAKAYKKMARKYHPDLNPNDPDAEARFKEVNEAHEVLK
CCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHH
DEEKRRLYDQLGPDWQHGQSFQGAQGHRYANFGGGAGFDSSGFSDFFDMIFGNAGAGGYR
HHHHHHHHHHCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCHHHHHHHHHCCCCCCCCC
HSSGFGPDPFGNFSARQRKGRDVEAQLTLTLEEALKGGKKSLTLQGQGGGDSRRLEVSIP
CCCCCCCCCCCCCCHHHHCCCCCEEEEEEEHHHHHCCCCEEEEEEECCCCCCEEEEEEEC
AGVREGAKIRLSGQGDPGMGGGPAGDLYLRVRLAEHPVFHVDGSDVLVDVYVAPWEAVLG
CCCCCCCEEEEECCCCCCCCCCCCCCEEEEEEECCCCEEEECCCCEEEEEEECCHHHHHC
AAVRVPTLDGEVQLKIAPGTGSGKKLRLRGKGLGPAASRGDQYVRIQIRVPENPSPEERE
CEEEEECCCCEEEEEEECCCCCCCEEEEECCCCCCCCCCCCEEEEEEEECCCCCCCHHHH
LWEKLAAVSGFNPRP
HHHHHHHHCCCCCCC
>Mature Secondary Structure 
GVEYKDYYKLLGVSRSASKEEIAKAYKKMARKYHPDLNPNDPDAEARFKEVNEAHEVLK
CCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHH
DEEKRRLYDQLGPDWQHGQSFQGAQGHRYANFGGGAGFDSSGFSDFFDMIFGNAGAGGYR
HHHHHHHHHHCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCHHHHHHHHHCCCCCCCCC
HSSGFGPDPFGNFSARQRKGRDVEAQLTLTLEEALKGGKKSLTLQGQGGGDSRRLEVSIP
CCCCCCCCCCCCCCHHHHCCCCCEEEEEEEHHHHHCCCCEEEEEEECCCCCCEEEEEEEC
AGVREGAKIRLSGQGDPGMGGGPAGDLYLRVRLAEHPVFHVDGSDVLVDVYVAPWEAVLG
CCCCCCCEEEEECCCCCCCCCCCCCCEEEEEEECCCCEEEECCCCEEEEEEECCHHHHHC
AAVRVPTLDGEVQLKIAPGTGSGKKLRLRGKGLGPAASRGDQYVRIQIRVPENPSPEERE
CEEEEECCCCEEEEEEECCCCCCCEEEEECCCCCCCCCCCCEEEEEEEECCCCCCCHHHH
LWEKLAAVSGFNPRP
HHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA