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The map label for this gene is pchR [H]

Identifier: 78356654

GI number: 78356654

Start: 1659190

End: 1660089

Strand: Direct

Name: pchR [H]

Synonym: Dde_1611

Alternate gene names: 78356654

Gene position: 1659190-1660089 (Clockwise)

Preceding gene: 78356653

Following gene: 78356655

Centisome position: 44.48

GC content: 52.0

Gene sequence:

>900_bases
ATGATACAAGAGAGAGTATGTTCAAAGGTTGAAACAACCGGCTTCAGTAATTTTTCTTTGACTACCTTTTGCCAGCGCAC
AGGGCGGGGCAGAGACATTTCTTTTTCTTACGTTCAGCAGGACGGCATGCTGGATGTCGGCTTTTGTGTAAGCGGGTCGT
GGCATGTGCTTCTGGGGGGGCGCAAATTGAGTACCGGCAAGGGCAATGTCGGCATGTTCCATCTGCCCGGCGATTCGTGG
CAGAGCCTCTATCCGCCCGATACATGCATTCAGGGCGTGGGAATTTCGGTGCGTATTGATGCACTGCGCTCAATGTTTGA
GGATGAACCGGTTACACACGAAGGGTTGAACCGGCTGCTCAGAGGCGGTGCCGATGCCACTGTTCTTGAATTCGGCCAGA
TGACGGCGCAGGAAATGGAAGGCGTGAAACAGGTGCTGATGGCCGGCTCTGTGGACGCTTTACGCAAGCTCTTTCTGGAA
GCGAAAACCATAGAGCTGCTGCACAGCTTTCTTGTGGCCCGCAATGCGCAGGGCAGAAAGCCGTTAACTGTGGCGGAAAT
AAGAAAAATGGCCAGTGCGGTGGAGATTATTGCTGAAGATCTGGAGGATCCGCCATGCATTTCCGGACTAGCAAGCCGGC
TGGGCATGAGTGCAAGCAAGCTGAAATCCTGCTTCAAAGAATATACCGGTGACTCTGTTTATTCGTATATAAAGAAAAAA
CGTCTGGAAAATGCCAGACGGTGCATCGAATCAGGCGAGATGAACGTCACTGAAGCTGCTGTCAGTGTGGGGTATAGCAG
TCTCGGGCACTTCAGCCGGATCTTTAAAGAGAATTTCGGCGTATTGCCCAAAGATGTGTCAAAAGGCCGGTACTGCCTGC
GTCACACTGCAGGCATGTGA

Upstream 100 bases:

>100_bases
CAAAACGTTACCGTGTAATGTTCTTTTCAGTCTTTGTTGACATTGAAAATCATTTTCGCTAATCGACCGTATATAGGCCA
GCAGAACAGGGGAAGCGGAA

Downstream 100 bases:

>100_bases
CTGCAGGCGTTTTATCTGGTGGACCTGCTGCTTCAGTCTGTTCAGGTGTAAGCCTGTAGTCTGCGGACTCCGTGCGATGA
CTGGTCATACAGGCCGGTCA

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 299; Mature: 299

Protein sequence:

>299_residues
MIQERVCSKVETTGFSNFSLTTFCQRTGRGRDISFSYVQQDGMLDVGFCVSGSWHVLLGGRKLSTGKGNVGMFHLPGDSW
QSLYPPDTCIQGVGISVRIDALRSMFEDEPVTHEGLNRLLRGGADATVLEFGQMTAQEMEGVKQVLMAGSVDALRKLFLE
AKTIELLHSFLVARNAQGRKPLTVAEIRKMASAVEIIAEDLEDPPCISGLASRLGMSASKLKSCFKEYTGDSVYSYIKKK
RLENARRCIESGEMNVTEAAVSVGYSSLGHFSRIFKENFGVLPKDVSKGRYCLRHTAGM

Sequences:

>Translated_299_residues
MIQERVCSKVETTGFSNFSLTTFCQRTGRGRDISFSYVQQDGMLDVGFCVSGSWHVLLGGRKLSTGKGNVGMFHLPGDSW
QSLYPPDTCIQGVGISVRIDALRSMFEDEPVTHEGLNRLLRGGADATVLEFGQMTAQEMEGVKQVLMAGSVDALRKLFLE
AKTIELLHSFLVARNAQGRKPLTVAEIRKMASAVEIIAEDLEDPPCISGLASRLGMSASKLKSCFKEYTGDSVYSYIKKK
RLENARRCIESGEMNVTEAAVSVGYSSLGHFSRIFKENFGVLPKDVSKGRYCLRHTAGM
>Mature_299_residues
MIQERVCSKVETTGFSNFSLTTFCQRTGRGRDISFSYVQQDGMLDVGFCVSGSWHVLLGGRKLSTGKGNVGMFHLPGDSW
QSLYPPDTCIQGVGISVRIDALRSMFEDEPVTHEGLNRLLRGGADATVLEFGQMTAQEMEGVKQVLMAGSVDALRKLFLE
AKTIELLHSFLVARNAQGRKPLTVAEIRKMASAVEIIAEDLEDPPCISGLASRLGMSASKLKSCFKEYTGDSVYSYIKKK
RLENARRCIESGEMNVTEAAVSVGYSSLGHFSRIFKENFGVLPKDVSKGRYCLRHTAGM

Specific function: Positive activator of the genes for pyochelin and ferripyochelin receptors [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018062
- InterPro:   IPR018060 [H]

Pfam domain/function: PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 32859; Mature: 32859

Theoretical pI: Translated: 8.39; Mature: 8.39

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.7 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
6.4 %Cys+Met (Translated Protein)
2.7 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
6.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIQERVCSKVETTGFSNFSLTTFCQRTGRGRDISFSYVQQDGMLDVGFCVSGSWHVLLGG
CCHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCHHHHHCCCCEEEEEEECCCEEEEECC
RKLSTGKGNVGMFHLPGDSWQSLYPPDTCIQGVGISVRIDALRSMFEDEPVTHEGLNRLL
EEECCCCCCEEEEECCCCCCCCCCCHHHHHHCCCCEEEHHHHHHHHCCCCCCHHHHHHHH
RGGADATVLEFGQMTAQEMEGVKQVLMAGSVDALRKLFLEAKTIELLHSFLVARNAQGRK
HCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
PLTVAEIRKMASAVEIIAEDLEDPPCISGLASRLGMSASKLKSCFKEYTGDSVYSYIKKK
CCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHHHCCHHHHHHHHHH
RLENARRCIESGEMNVTEAAVSVGYSSLGHFSRIFKENFGVLPKDVSKGRYCLRHTAGM
HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCHHHHHHHCCC
>Mature Secondary Structure
MIQERVCSKVETTGFSNFSLTTFCQRTGRGRDISFSYVQQDGMLDVGFCVSGSWHVLLGG
CCHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCHHHHHCCCCEEEEEEECCCEEEEECC
RKLSTGKGNVGMFHLPGDSWQSLYPPDTCIQGVGISVRIDALRSMFEDEPVTHEGLNRLL
EEECCCCCCEEEEECCCCCCCCCCCHHHHHHCCCCEEEHHHHHHHHCCCCCCHHHHHHHH
RGGADATVLEFGQMTAQEMEGVKQVLMAGSVDALRKLFLEAKTIELLHSFLVARNAQGRK
HCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
PLTVAEIRKMASAVEIIAEDLEDPPCISGLASRLGMSASKLKSCFKEYTGDSVYSYIKKK
CCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHHHCCHHHHHHHHHH
RLENARRCIESGEMNVTEAAVSVGYSSLGHFSRIFKENFGVLPKDVSKGRYCLRHTAGM
HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8397186; 10984043 [H]