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The map label for this gene is ssb [H]

Identifier: 78356588

GI number: 78356588

Start: 1564065

End: 1564565

Strand: Direct

Name: ssb [H]

Synonym: Dde_1545

Alternate gene names: 78356588

Gene position: 1564065-1564565 (Clockwise)

Preceding gene: 78356587

Following gene: 78356590

Centisome position: 41.93

GC content: 58.48

Gene sequence:

>501_bases
ATGTCGCTTAATAAAGTTATGCTCATAGGCAGGCTGGGTGCCGACCCCGAGCTTAAATATTCCCAATCAGGAACCCCTGT
TGCGCGTATGCGCATTGCCACCAGCGAAACCTATACGGACCGCGAAGGCAACCGGCAGGAAAGCACGGAGTGGCATACCG
TGGTTGTGTTCCAGCGTCAGGCCGAAAACTGCGCCAACTACCTTTCCAAAGGCAGCATGGTGTATGTGGAAGGCAGCCTG
CAGACAAGACAGTGGCAGGATCAGCAGGGACAGAACAGATACACCACCGAGATCAAGGGCCAGCGCGTCCAGTTTCTTGA
CAGAAAAGGCGATGGTCCCGGTGCGCCTGCACAGGGCGGCGGTGAGCGCCGTTCTTTCCAGCAGCCGCAGCAGTCACAGC
AGCGTGGCGGCCGTCAGGCTCCTCCTGCCGATGACGGATTCGATGATCTCGGTCCGGCATTTCCGTCGGAAGTCAGCGGA
ATGGACGACGTGCCGTTCTAG

Upstream 100 bases:

>100_bases
GGCAAACTCGCTGAGCGAGAGAATAGAGGAAGGACTTTCCGAGCTTGAAAAAGAGCTGGCGAAAGCGTAGGAAGAGCCGA
GATACAAAAGGAGACGTCTC

Downstream 100 bases:

>100_bases
GCACATCGTGTTTATTCGTGATGTTAAAGCCCCGCAGGCAAGCCTGCGGGGCTTTTGTATTCTGTATGATTCTCCGGTAT
GCAGCGGGATCGGGTGCACC

Product: single-strand binding protein

Products: NA

Alternate protein names: SSB; Helix-destabilizing protein [H]

Number of amino acids: Translated: 166; Mature: 165

Protein sequence:

>166_residues
MSLNKVMLIGRLGADPELKYSQSGTPVARMRIATSETYTDREGNRQESTEWHTVVVFQRQAENCANYLSKGSMVYVEGSL
QTRQWQDQQGQNRYTTEIKGQRVQFLDRKGDGPGAPAQGGGERRSFQQPQQSQQRGGRQAPPADDGFDDLGPAFPSEVSG
MDDVPF

Sequences:

>Translated_166_residues
MSLNKVMLIGRLGADPELKYSQSGTPVARMRIATSETYTDREGNRQESTEWHTVVVFQRQAENCANYLSKGSMVYVEGSL
QTRQWQDQQGQNRYTTEIKGQRVQFLDRKGDGPGAPAQGGGERRSFQQPQQSQQRGGRQAPPADDGFDDLGPAFPSEVSG
MDDVPF
>Mature_165_residues
SLNKVMLIGRLGADPELKYSQSGTPVARMRIATSETYTDREGNRQESTEWHTVVVFQRQAENCANYLSKGSMVYVEGSLQ
TRQWQDQQGQNRYTTEIKGQRVQFLDRKGDGPGAPAQGGGERRSFQQPQQSQQRGGRQAPPADDGFDDLGPAFPSEVSGM
DDVPF

Specific function: This protein is essential for replication of the chromosome. It is also involved in DNA recombination and repair [H]

COG id: COG0629

COG function: function code L; Single-stranded DNA-binding protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 SSB domain [H]

Homologues:

Organism=Escherichia coli, GI1790494, Length=119, Percent_Identity=50.4201680672269, Blast_Score=114, Evalue=3e-27,
Organism=Drosophila melanogaster, GI85725234, Length=106, Percent_Identity=35.8490566037736, Blast_Score=68, Evalue=3e-12,
Organism=Drosophila melanogaster, GI24647376, Length=106, Percent_Identity=35.8490566037736, Blast_Score=68, Evalue=3e-12,

Paralogues:

None

Copy number: 1622 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. 2,000 Molecules/Cell In: Glucose minimal media [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012340
- InterPro:   IPR016027
- InterPro:   IPR000424
- InterPro:   IPR011344 [H]

Pfam domain/function: PF00436 SSB [H]

EC number: NA

Molecular weight: Translated: 18461; Mature: 18329

Theoretical pI: Translated: 5.29; Mature: 5.29

Prosite motif: PS50935 SSB

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLNKVMLIGRLGADPELKYSQSGTPVARMRIATSETYTDREGNRQESTEWHTVVVFQRQ
CCCCEEEEEEECCCCCCCEECCCCCCEEEEEEECCCCCCCCCCCCCCCCCEEEEEEEHHH
AENCANYLSKGSMVYVEGSLQTRQWQDQQGQNRYTTEIKGQRVQFLDRKGDGPGAPAQGG
HHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCEEECCCCCEEEEEECCCCCCCCCCCCC
GERRSFQQPQQSQQRGGRQAPPADDGFDDLGPAFPSEVSGMDDVPF
CCCCCCCCHHHHHHCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
SLNKVMLIGRLGADPELKYSQSGTPVARMRIATSETYTDREGNRQESTEWHTVVVFQRQ
CCCEEEEEEECCCCCCCEECCCCCCEEEEEEECCCCCCCCCCCCCCCCCEEEEEEEHHH
AENCANYLSKGSMVYVEGSLQTRQWQDQQGQNRYTTEIKGQRVQFLDRKGDGPGAPAQGG
HHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCEEECCCCCEEEEEECCCCCCCCCCCCC
GERRSFQQPQQSQQRGGRQAPPADDGFDDLGPAFPSEVSGMDDVPF
CCCCCCCCHHHHHHCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12948488 [H]