| Definition | Desulfovibrio desulfuricans subsp. desulfuricans str. G20 chromosome, complete genome. |
|---|---|
| Accession | NC_007519 |
| Length | 3,730,232 |
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The map label for this gene is pflD [H]
Identifier: 78356320
GI number: 78356320
Start: 1289693
End: 1292182
Strand: Reverse
Name: pflD [H]
Synonym: Dde_1273
Alternate gene names: 78356320
Gene position: 1292182-1289693 (Counterclockwise)
Preceding gene: 78356321
Following gene: 78356319
Centisome position: 34.64
GC content: 58.15
Gene sequence:
>2490_bases ATGCAATGCTGCACAACTCCCTTGTCTCCCCATGAACAGCGCCTTCAGGACAAAATAGCCGGTAAGGAAGACAGCTTCCG CAAGTCGCACGAGCGCGTGTTCAACATTCTGGACAGCTTTGACGGCAAACGCCCCCGCATCGACGTGGAACGCGCAAAGC TCTTCACCGACTCCATGAAGGAGACCGAAGGCCAGCCGCTGGTGCTGCGCTGGGCCAAGGCCATGAAGCATGTGGCCGAA CATATCACCGTGTACATTGATGACGACCAGCTGATATGCGGACGCGGCGGCTGCCCCGGCCGGTACGGCGTGCTGTACCC CGAACTGGACGGCGACTTTCTTGATCTGGCCATTGAAGACCTGCCCAACCGTACCGAATCACCCTTTACCATCACCGAAG CGGACGCACGCGTGGTGGTGGAAGAAATAGCTCCCTACTGGAAAGGCAAGACCTACCACGAAGACCTGAACCTCGCCCTG CCTTCGGATGTGCACAAACTGACCTATGACGACCCGCAGGGTCTGAAGTCGCGCTTCATTGTCAACGAAACCTCGTCGTT CCGTTCGTCCATCCAGTGGGTGCACGACTACGAAAAGGTTCTCAAGCGCGGTTTCAGAGGCCTGAAGGAAGAAGCGCAGG AGAAAATAGCAGGGCTTGATCCCTTAAGCCCCCGCGACAACGTGGAAAAGCGCCCCTTCCTTGAAGCTATCGTCATCGTG TGCGACGCCATTATTCTGTGGGCCAACCGCCATGCCAAGCTGGCGGCGGACATGGCCGCGGCAGAAACCAATCCCGTTCG CAAGGCGGAACTGGAAACCATGGCCGAGATATGCGCATGGGTACCGGAAAACCCCGCCCGCAACTTCTATGAAGCCGTGC AGGCCCAGTGGTTTACCCAGATGTTCTCGCGCCTTGAGCAGAAAACAGGCACCATTGTCTCCAACGGCCGCATGGACCAG TACTTCTGGCCCTTCTACCGCAAAGACATAGAAGAAGGCCGCATCACCGAAGAAAGCGCCCTTGAGCTGCTGGAATGCAT GTGGGTGGGCATGGCGCAGTATGTCGACCTGTACATTTCTCCCGCGGGCGGAGCCTTTAACGAAGGGTACGCCCACTGGG AAGCTGTGACCATAGGCGGGCAGACTCCGCAGGGGCTGGACGCCACCAACGACCTGACCTACCTGTTCCTTAAGTCCAAG CGTGAATTCCCGCTGCACTACCCCGACCTTGCAGCACGCATTCATTCGCGCTCGCCCGAACGCTACCTGCACGACGTGGC CGAAACCATCAAATTCGGCTCCGGCTTTCCCAAGCTGATCAACGACGAAGAAATCGTGCCTCTGTATGTCTCCAAGGGTG CCTCCTTTGAGGAAGCCCTGGACTACGCCGTTTCCGGCTGCACCGAAGCCCGTATGCCCAACCGCGACACCTACACCAGC GGCGGCGCATACATCAACTTTGCCGCAGCGCTGGAAATGGTGCTCTACAACGGGCGCATGCTCAAATACGGTGAAAACGA GCTGGGTCTGGAAACCGGCGACCCCACCCGCTTTGAAACGTGGGAAGAGTTCTGGAACGCCTATGTGCTGCAGCACGAGC ACTTCCTGCGTGCGGCTTTCATCCAGCAGCACATCATCAACAACGTGCGCGCCCGCCACTTTGCCCAGCCCATGGGCAGC GCCCTGCACGACCTGTGCATGAAGCACTGCCTCGACCTGCACACCCCGCAGATTCCCGAAGGTATAAACCTCGGGTACTT CGAGTACATGGGCTTCGGCACCGTTGTCGACTCGCTTGCAGCCATCAAAAAGCTTGTTTTTGAAGACAAAAAGCTGACCA TGCAGGAAGTCATCGAAGCCCTGAAGTGCAACTTCGAAGGCAAGGAAGACGTTCAGCAGATGCTCAAGTCCGCCCCCTGC TACGGCAACAACGATGAATACGCCGACAGCATCGCCCGCGAAATCGACGCCATTTCGGTAAAGTACGGCCGCCGTTACTC GCCCGAACTCGGCATGCACAACGACGTGCGTTATGTGCCTTTCACCTCGCACGTGCCTTTCGGCAAAGTGGTTTCTGCCA CTCCCAACGGCCGGCTGGCCTGGACGCCGCTGTCTGACGGCTCATCCGCTTCGCACGGTGCCGACGTAAACGGCCCCACC GCTGTGCTGCAGTCCAACTTCAGTTCCAAGAACTACGGCTACCGCGACCGCGCCGCCCGTATGCTGAACATCAAGTTCAC CCCCAAATGCGTGGAAGGCGATGAAGGCACCGAAAAGCTGGTCTCGTTCATCCGTACATTCTGCGACCTGAAGCTGTGGC ACGTGCAGTTCAACGTGATCAACCGCGACACGCTGATTGCCGCGCAGAAAGACCCTGAAAAATACCGCAGCCTCATTGTA CGCATTGCAGGCTACAGCGCGTACTTTGTGGACCTTTCGCCCGATCTGCAGAACGACCTTATCGCCCGTACCCAGCACGA CGCGATGTAG
Upstream 100 bases:
>100_bases CTGATGAAAGCACGGCGCACGGCCGGTGTCCTGCACCGCCCCGGGCGCAGCATATACACACTCAACAGAACTCAGACGAA TACACTCAGGAGAAAAAACC
Downstream 100 bases:
>100_bases GCACCGGCACTAAAAAGGCATCATCCACACTCAGCCGGCCAGCCGCCCCCTTTACGGGGGCGGCACCGGCATTTACCGAA CCTGCTAGCCGAAAAAAAGG
Product: formate C-acetyltransferase
Products: NA
Alternate protein names: Pyruvate formate-lyase 2 [H]
Number of amino acids: Translated: 829; Mature: 829
Protein sequence:
>829_residues MQCCTTPLSPHEQRLQDKIAGKEDSFRKSHERVFNILDSFDGKRPRIDVERAKLFTDSMKETEGQPLVLRWAKAMKHVAE HITVYIDDDQLICGRGGCPGRYGVLYPELDGDFLDLAIEDLPNRTESPFTITEADARVVVEEIAPYWKGKTYHEDLNLAL PSDVHKLTYDDPQGLKSRFIVNETSSFRSSIQWVHDYEKVLKRGFRGLKEEAQEKIAGLDPLSPRDNVEKRPFLEAIVIV CDAIILWANRHAKLAADMAAAETNPVRKAELETMAEICAWVPENPARNFYEAVQAQWFTQMFSRLEQKTGTIVSNGRMDQ YFWPFYRKDIEEGRITEESALELLECMWVGMAQYVDLYISPAGGAFNEGYAHWEAVTIGGQTPQGLDATNDLTYLFLKSK REFPLHYPDLAARIHSRSPERYLHDVAETIKFGSGFPKLINDEEIVPLYVSKGASFEEALDYAVSGCTEARMPNRDTYTS GGAYINFAAALEMVLYNGRMLKYGENELGLETGDPTRFETWEEFWNAYVLQHEHFLRAAFIQQHIINNVRARHFAQPMGS ALHDLCMKHCLDLHTPQIPEGINLGYFEYMGFGTVVDSLAAIKKLVFEDKKLTMQEVIEALKCNFEGKEDVQQMLKSAPC YGNNDEYADSIAREIDAISVKYGRRYSPELGMHNDVRYVPFTSHVPFGKVVSATPNGRLAWTPLSDGSSASHGADVNGPT AVLQSNFSSKNYGYRDRAARMLNIKFTPKCVEGDEGTEKLVSFIRTFCDLKLWHVQFNVINRDTLIAAQKDPEKYRSLIV RIAGYSAYFVDLSPDLQNDLIARTQHDAM
Sequences:
>Translated_829_residues MQCCTTPLSPHEQRLQDKIAGKEDSFRKSHERVFNILDSFDGKRPRIDVERAKLFTDSMKETEGQPLVLRWAKAMKHVAE HITVYIDDDQLICGRGGCPGRYGVLYPELDGDFLDLAIEDLPNRTESPFTITEADARVVVEEIAPYWKGKTYHEDLNLAL PSDVHKLTYDDPQGLKSRFIVNETSSFRSSIQWVHDYEKVLKRGFRGLKEEAQEKIAGLDPLSPRDNVEKRPFLEAIVIV CDAIILWANRHAKLAADMAAAETNPVRKAELETMAEICAWVPENPARNFYEAVQAQWFTQMFSRLEQKTGTIVSNGRMDQ YFWPFYRKDIEEGRITEESALELLECMWVGMAQYVDLYISPAGGAFNEGYAHWEAVTIGGQTPQGLDATNDLTYLFLKSK REFPLHYPDLAARIHSRSPERYLHDVAETIKFGSGFPKLINDEEIVPLYVSKGASFEEALDYAVSGCTEARMPNRDTYTS GGAYINFAAALEMVLYNGRMLKYGENELGLETGDPTRFETWEEFWNAYVLQHEHFLRAAFIQQHIINNVRARHFAQPMGS ALHDLCMKHCLDLHTPQIPEGINLGYFEYMGFGTVVDSLAAIKKLVFEDKKLTMQEVIEALKCNFEGKEDVQQMLKSAPC YGNNDEYADSIAREIDAISVKYGRRYSPELGMHNDVRYVPFTSHVPFGKVVSATPNGRLAWTPLSDGSSASHGADVNGPT AVLQSNFSSKNYGYRDRAARMLNIKFTPKCVEGDEGTEKLVSFIRTFCDLKLWHVQFNVINRDTLIAAQKDPEKYRSLIV RIAGYSAYFVDLSPDLQNDLIARTQHDAM >Mature_829_residues MQCCTTPLSPHEQRLQDKIAGKEDSFRKSHERVFNILDSFDGKRPRIDVERAKLFTDSMKETEGQPLVLRWAKAMKHVAE HITVYIDDDQLICGRGGCPGRYGVLYPELDGDFLDLAIEDLPNRTESPFTITEADARVVVEEIAPYWKGKTYHEDLNLAL PSDVHKLTYDDPQGLKSRFIVNETSSFRSSIQWVHDYEKVLKRGFRGLKEEAQEKIAGLDPLSPRDNVEKRPFLEAIVIV CDAIILWANRHAKLAADMAAAETNPVRKAELETMAEICAWVPENPARNFYEAVQAQWFTQMFSRLEQKTGTIVSNGRMDQ YFWPFYRKDIEEGRITEESALELLECMWVGMAQYVDLYISPAGGAFNEGYAHWEAVTIGGQTPQGLDATNDLTYLFLKSK REFPLHYPDLAARIHSRSPERYLHDVAETIKFGSGFPKLINDEEIVPLYVSKGASFEEALDYAVSGCTEARMPNRDTYTS GGAYINFAAALEMVLYNGRMLKYGENELGLETGDPTRFETWEEFWNAYVLQHEHFLRAAFIQQHIINNVRARHFAQPMGS ALHDLCMKHCLDLHTPQIPEGINLGYFEYMGFGTVVDSLAAIKKLVFEDKKLTMQEVIEALKCNFEGKEDVQQMLKSAPC YGNNDEYADSIAREIDAISVKYGRRYSPELGMHNDVRYVPFTSHVPFGKVVSATPNGRLAWTPLSDGSSASHGADVNGPT AVLQSNFSSKNYGYRDRAARMLNIKFTPKCVEGDEGTEKLVSFIRTFCDLKLWHVQFNVINRDTLIAAQKDPEKYRSLIV RIAGYSAYFVDLSPDLQNDLIARTQHDAM
Specific function: Glucose metabolism (nonoxidative conversion). [C]
COG id: COG1882
COG function: function code C; Pyruvate-formate lyase
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 pyruvate formate lyase domain [H]
Homologues:
Organism=Escherichia coli, GI1790388, Length=797, Percent_Identity=33.1242158092848, Blast_Score=393, Evalue=1e-110, Organism=Escherichia coli, GI1787044, Length=810, Percent_Identity=31.4814814814815, Blast_Score=386, Evalue=1e-108,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001150 - InterPro: IPR019777 - InterPro: IPR004184 - InterPro: IPR010098 [H]
Pfam domain/function: PF01228 Gly_radical; PF02901 PFL [H]
EC number: =2.3.1.54 [H]
Molecular weight: Translated: 94135; Mature: 94135
Theoretical pI: Translated: 5.34; Mature: 5.34
Prosite motif: PS00850 GLY_RADICAL_1 ; PS51149 GLY_RADICAL_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 4.1 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 4.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQCCTTPLSPHEQRLQDKIAGKEDSFRKSHERVFNILDSFDGKRPRIDVERAKLFTDSMK CCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHH ETEGQPLVLRWAKAMKHVAEHITVYIDDDQLICGRGGCPGRYGVLYPELDGDFLDLAIED HCCCCCHHHHHHHHHHHHHHHEEEEECCCEEEECCCCCCCCCCEEEECCCCCHHHHHHHH LPNRTESPFTITEADARVVVEEIAPYWKGKTYHEDLNLALPSDVHKLTYDDPQGLKSRFI CCCCCCCCEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHCCCCCCHHHHHEEE VNETSSFRSSIQWVHDYEKVLKRGFRGLKEEAQEKIAGLDPLSPRDNVEKRPFLEAIVIV EECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHH CDAIILWANRHAKLAADMAAAETNPVRKAELETMAEICAWVPENPARNFYEAVQAQWFTQ HHHHHHHCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH MFSRLEQKTGTIVSNGRMDQYFWPFYRKDIEEGRITEESALELLECMWVGMAQYVDLYIS HHHHHHHHCCCEEECCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHEEEEC PAGGAFNEGYAHWEAVTIGGQTPQGLDATNDLTYLFLKSKREFPLHYPDLAARIHSRSPE CCCCCCCCCCCEEEEEEECCCCCCCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHCCCHH RYLHDVAETIKFGSGFPKLINDEEIVPLYVSKGASFEEALDYAVSGCTEARMPNRDTYTS HHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHCCHHCCCCCCCCCCC GGAYINFAAALEMVLYNGRMLKYGENELGLETGDPTRFETWEEFWNAYVLQHEHFLRAAF CCCEEEHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH IQQHIINNVRARHFAQPMGSALHDLCMKHCLDLHTPQIPEGINLGYFEYMGFGTVVDSLA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHH AIKKLVFEDKKLTMQEVIEALKCNFEGKEDVQQMLKSAPCYGNNDEYADSIAREIDAISV HHHHHHHCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHH KYGRRYSPELGMHNDVRYVPFTSHVPFGKVVSATPNGRLAWTPLSDGSSASHGADVNGPT HCCCCCCCCCCCCCCEEEECCCCCCCCCCEEECCCCCEEEEEECCCCCCCCCCCCCCCCH AVLQSNFSSKNYGYRDRAARMLNIKFTPKCVEGDEGTEKLVSFIRTFCDLKLWHVQFNVI HHHHCCCCCCCCCCHHHHCEEEEEEECCCCCCCCCCHHHHHHHHHHHHCCEEEEEEEEEE NRDTLIAAQKDPEKYRSLIVRIAGYSAYFVDLSPDLQNDLIARTQHDAM CCCEEEEECCCHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHCCC >Mature Secondary Structure MQCCTTPLSPHEQRLQDKIAGKEDSFRKSHERVFNILDSFDGKRPRIDVERAKLFTDSMK CCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHH ETEGQPLVLRWAKAMKHVAEHITVYIDDDQLICGRGGCPGRYGVLYPELDGDFLDLAIED HCCCCCHHHHHHHHHHHHHHHEEEEECCCEEEECCCCCCCCCCEEEECCCCCHHHHHHHH LPNRTESPFTITEADARVVVEEIAPYWKGKTYHEDLNLALPSDVHKLTYDDPQGLKSRFI CCCCCCCCEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHCCCCCCHHHHHEEE VNETSSFRSSIQWVHDYEKVLKRGFRGLKEEAQEKIAGLDPLSPRDNVEKRPFLEAIVIV EECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHH CDAIILWANRHAKLAADMAAAETNPVRKAELETMAEICAWVPENPARNFYEAVQAQWFTQ HHHHHHHCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH MFSRLEQKTGTIVSNGRMDQYFWPFYRKDIEEGRITEESALELLECMWVGMAQYVDLYIS HHHHHHHHCCCEEECCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHEEEEC PAGGAFNEGYAHWEAVTIGGQTPQGLDATNDLTYLFLKSKREFPLHYPDLAARIHSRSPE CCCCCCCCCCCEEEEEEECCCCCCCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHCCCHH RYLHDVAETIKFGSGFPKLINDEEIVPLYVSKGASFEEALDYAVSGCTEARMPNRDTYTS HHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHCCHHCCCCCCCCCCC GGAYINFAAALEMVLYNGRMLKYGENELGLETGDPTRFETWEEFWNAYVLQHEHFLRAAF CCCEEEHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH IQQHIINNVRARHFAQPMGSALHDLCMKHCLDLHTPQIPEGINLGYFEYMGFGTVVDSLA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHH AIKKLVFEDKKLTMQEVIEALKCNFEGKEDVQQMLKSAPCYGNNDEYADSIAREIDAISV HHHHHHHCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHH KYGRRYSPELGMHNDVRYVPFTSHVPFGKVVSATPNGRLAWTPLSDGSSASHGADVNGPT HCCCCCCCCCCCCCCEEEECCCCCCCCCCEEECCCCCEEEEEECCCCCCCCCCCCCCCCH AVLQSNFSSKNYGYRDRAARMLNIKFTPKCVEGDEGTEKLVSFIRTFCDLKLWHVQFNVI HHHHCCCCCCCCCCHHHHCEEEEEEECCCCCCCCCCHHHHHHHHHHHHCCEEEEEEEEEE NRDTLIAAQKDPEKYRSLIVRIAGYSAYFVDLSPDLQNDLIARTQHDAM CCCEEEEECCCHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8265357; 9278503; 7773398 [H]