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The map label for this gene is rnk [H]

Identifier: 78356295

GI number: 78356295

Start: 1262867

End: 1263280

Strand: Reverse

Name: rnk [H]

Synonym: Dde_1248

Alternate gene names: 78356295

Gene position: 1263280-1262867 (Counterclockwise)

Preceding gene: 78356297

Following gene: 78356294

Centisome position: 33.87

GC content: 56.04

Gene sequence:

>414_bases
ATGAACAATGCCCCCGCCATCACAATTACCGCGCAGGATGCAGAACGTCTGGAATCGCTGCTGGACAGCCTTTCCCCTGA
TGCCTTTCCCCAGCTTGAAGTGCTGGAAAGAGAACTGGAACGGGCAATCATCGTCGAGCCGGATAAAATTCCGCCTACTG
TGGTAACCATGAACTCTGTGGTCAGATTCAAATTGCGCCCTTCGGGGGCGGTGCATCGTCTTAAACTGGTGTACCCGCGG
CACTCCGCCGCCGAAGGAGAAACGGTATCCATCCTTGCCCCCGTGGGCAGCGCCCTGCTGGGATTGGCCGAAGGCGACGA
GATAACGTGGCCCAACGCCAGCGGCGGCACACTGCAACTGGTGGTCGACCATATTGAATACCAGCCCGAACGATCAGGAA
ATTTTGAATTATAA

Upstream 100 bases:

>100_bases
GTACATCCGAAAGGGGGCGTTTCGTACGCCCCCTTTTTTATTGTCTGCCCGTCAGGGCGCAGGCAGTGCAAAATCATATA
TTCAAACACCGGAGTCACAC

Downstream 100 bases:

>100_bases
CCGGCACGTCAGGCCGCCCTCCGTATAACCGGACGGGCGGCCGTTTACGGCGGCGCATCATAAAAGGACCCGTAATGGTA
CAACTTCTGCCTAAAGAAAC

Product: GreA/GreB family elongation factor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 137; Mature: 137

Protein sequence:

>137_residues
MNNAPAITITAQDAERLESLLDSLSPDAFPQLEVLERELERAIIVEPDKIPPTVVTMNSVVRFKLRPSGAVHRLKLVYPR
HSAAEGETVSILAPVGSALLGLAEGDEITWPNASGGTLQLVVDHIEYQPERSGNFEL

Sequences:

>Translated_137_residues
MNNAPAITITAQDAERLESLLDSLSPDAFPQLEVLERELERAIIVEPDKIPPTVVTMNSVVRFKLRPSGAVHRLKLVYPR
HSAAEGETVSILAPVGSALLGLAEGDEITWPNASGGTLQLVVDHIEYQPERSGNFEL
>Mature_137_residues
MNNAPAITITAQDAERLESLLDSLSPDAFPQLEVLERELERAIIVEPDKIPPTVVTMNSVVRFKLRPSGAVHRLKLVYPR
HSAAEGETVSILAPVGSALLGLAEGDEITWPNASGGTLQLVVDHIEYQPERSGNFEL

Specific function: Rnk and sspA can functionally replace P.aeruginosa alginate regulatory gene algR2 [H]

COG id: COG0782

COG function: function code K; Transcription elongation factor

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1786827, Length=133, Percent_Identity=41.3533834586466, Blast_Score=97, Evalue=4e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001437 [H]

Pfam domain/function: PF01272 GreA_GreB [H]

EC number: NA

Molecular weight: Translated: 14907; Mature: 14907

Theoretical pI: Translated: 4.42; Mature: 4.42

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNNAPAITITAQDAERLESLLDSLSPDAFPQLEVLERELERAIIVEPDKIPPTVVTMNSV
CCCCCEEEEECCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHEEEECCCCCCCEEEEECCE
VRFKLRPSGAVHRLKLVYPRHSAAEGETVSILAPVGSALLGLAEGDEITWPNASGGTLQL
EEEEECCCCCEEEEEEEECCCCCCCCCEEEEEECCCHHHHCCCCCCEEECCCCCCCEEEE
VVDHIEYQPERSGNFEL
EEECHHCCCCCCCCCCC
>Mature Secondary Structure
MNNAPAITITAQDAERLESLLDSLSPDAFPQLEVLERELERAIIVEPDKIPPTVVTMNSV
CCCCCEEEEECCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHEEEECCCCCCCEEEEECCE
VRFKLRPSGAVHRLKLVYPRHSAAEGETVSILAPVGSALLGLAEGDEITWPNASGGTLQL
EEEEECCCCCEEEEEEEECCCCCCCCCEEEEEECCCHHHHCCCCCCEEECCCCCCCEEEE
VVDHIEYQPERSGNFEL
EEECHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]