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The map label for this gene is dppB [H]

Identifier: 78356231

GI number: 78356231

Start: 1213116

End: 1214117

Strand: Reverse

Name: dppB [H]

Synonym: Dde_1184

Alternate gene names: 78356231

Gene position: 1214117-1213116 (Counterclockwise)

Preceding gene: 78356232

Following gene: 78356230

Centisome position: 32.55

GC content: 56.09

Gene sequence:

>1002_bases
TTGCTACATTTTCTGATAAAAAGACTGCTTCAGGTCATTCCCACAGTGCTCGGCATATCCGTGCTGGTCTTTTTCATGAT
CCACCTTGTGCCGGGAGACCCTGCGGAAATGATGCTGGGGGAGCGTGCCAACGAAAAAGCCCTGACGGAACTGCGCCAGC
AGCTGGGGCTGGATAAACCCCTGTATGTTCAGTACGGACTGTTCATGTCCAGACTGGCACAGGGCGATCTGGGCCGCGCA
CTGCGAACCAACGAAAAAATAACCACCGAGATAGCCACACATTTTCCCGCCACGCTGGAACTGGCGCTGGTGGCCATAGT
ATTTGCCGTTACGCTGGGCATGCTGGCGGGTATTGTTTCCGCCACGCGCCAGTATTCGCTGTTCGATTACGGCTCCATGG
TGCTGTCGCTCATCGGGGTTTCCATGCCTATTTTCTGGCTGGGGCTGGTGCTGATGATCATATTTTCAGTCAATCTCGGC
TGGCTGCCGCTGTCGGGCAGGCTTTCCTATGACATCACGCTGGAGCCTGTAACCAATCTGTACCTTATCGATTCCATCAT
TCAGGGCAACTGGGCGGCTTTCAAAGATGCTCTGCACCACATCATCATGCCGGCCTTCACCCTGAGCACCATTCCCATGG
CCATCATCGCCCGCATGACCCGGTCAAGCATGCTCGAAGTGCTGCGGCAGGATTACATACGCACTGCCAAAGCCAAGGGG
CTGTCGCCGCGCGCCGTGCACTACAAGCACGCCCTGCGCAATGCGCTCATCCCCATTGTCACCATCATCGGGCTGCAGTT
CAGCATTCTGCTGGGCGGCGCCATACTTACAGAAACCATCTTTGCATGGCCGGGCATAGGGTCGTGGCTGCTCAATGCCG
TGTATGCGCGTGATTTCAACGCGGTACAGGGCGGCACCATGCTTATCGCCACGCTGTTTGTGCTCATCAACGTGCTTGTG
GACCTGCTGTATGCTGTCATCAACCCGAGGATCAAGGTGTAG

Upstream 100 bases:

>100_bases
GGTATGGCTGAAGTAGCCCCACAGGCAGACCACGACATGTGAACCATCTACCGGCAGGGGCGCGCAACCGCCCCTGCCGT
TGTATTCAACGGGAAGAGCA

Downstream 100 bases:

>100_bases
TCATGTCTCAGGTACTTACAGGCACCACCGCTGCCCAAGAGGAAAAATCACACACCCCTCTGGTCGAAGCCATGCTGAGG
CTGCACAAAAACCGCACAGC

Product: dipeptide ABC transporter permease

Products: ADP; phosphate; dipeptides [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 333; Mature: 333

Protein sequence:

>333_residues
MLHFLIKRLLQVIPTVLGISVLVFFMIHLVPGDPAEMMLGERANEKALTELRQQLGLDKPLYVQYGLFMSRLAQGDLGRA
LRTNEKITTEIATHFPATLELALVAIVFAVTLGMLAGIVSATRQYSLFDYGSMVLSLIGVSMPIFWLGLVLMIIFSVNLG
WLPLSGRLSYDITLEPVTNLYLIDSIIQGNWAAFKDALHHIIMPAFTLSTIPMAIIARMTRSSMLEVLRQDYIRTAKAKG
LSPRAVHYKHALRNALIPIVTIIGLQFSILLGGAILTETIFAWPGIGSWLLNAVYARDFNAVQGGTMLIATLFVLINVLV
DLLYAVINPRIKV

Sequences:

>Translated_333_residues
MLHFLIKRLLQVIPTVLGISVLVFFMIHLVPGDPAEMMLGERANEKALTELRQQLGLDKPLYVQYGLFMSRLAQGDLGRA
LRTNEKITTEIATHFPATLELALVAIVFAVTLGMLAGIVSATRQYSLFDYGSMVLSLIGVSMPIFWLGLVLMIIFSVNLG
WLPLSGRLSYDITLEPVTNLYLIDSIIQGNWAAFKDALHHIIMPAFTLSTIPMAIIARMTRSSMLEVLRQDYIRTAKAKG
LSPRAVHYKHALRNALIPIVTIIGLQFSILLGGAILTETIFAWPGIGSWLLNAVYARDFNAVQGGTMLIATLFVLINVLV
DLLYAVINPRIKV
>Mature_333_residues
MLHFLIKRLLQVIPTVLGISVLVFFMIHLVPGDPAEMMLGERANEKALTELRQQLGLDKPLYVQYGLFMSRLAQGDLGRA
LRTNEKITTEIATHFPATLELALVAIVFAVTLGMLAGIVSATRQYSLFDYGSMVLSLIGVSMPIFWLGLVLMIIFSVNLG
WLPLSGRLSYDITLEPVTNLYLIDSIIQGNWAAFKDALHHIIMPAFTLSTIPMAIIARMTRSSMLEVLRQDYIRTAKAKG
LSPRAVHYKHALRNALIPIVTIIGLQFSILLGGAILTETIFAWPGIGSWLLNAVYARDFNAVQGGTMLIATLFVLINVLV
DLLYAVINPRIKV

Specific function: Part of the binding-protein-dependent transport system for dipeptides; probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0601

COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport systems, permease components

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1789965, Length=336, Percent_Identity=49.1071428571429, Blast_Score=329, Evalue=2e-91,
Organism=Escherichia coli, GI1787053, Length=332, Percent_Identity=42.7710843373494, Blast_Score=276, Evalue=9e-76,
Organism=Escherichia coli, GI1787761, Length=330, Percent_Identity=44.8484848484849, Blast_Score=252, Evalue=2e-68,
Organism=Escherichia coli, GI1789888, Length=335, Percent_Identity=35.5223880597015, Blast_Score=213, Evalue=2e-56,
Organism=Escherichia coli, GI1787497, Length=334, Percent_Identity=35.0299401197605, Blast_Score=202, Evalue=3e-53,
Organism=Escherichia coli, GI1787550, Length=274, Percent_Identity=35.036496350365, Blast_Score=191, Evalue=8e-50,
Organism=Escherichia coli, GI1788504, Length=374, Percent_Identity=25.9358288770053, Blast_Score=122, Evalue=3e-29,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 36846; Mature: 36846

Theoretical pI: Translated: 9.78; Mature: 9.78

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.2 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLHFLIKRLLQVIPTVLGISVLVFFMIHLVPGDPAEMMLGERANEKALTELRQQLGLDKP
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCHHHHHHHHHHHCCCCC
LYVQYGLFMSRLAQGDLGRALRTNEKITTEIATHFPATLELALVAIVFAVTLGMLAGIVS
HHHHHHHHHHHHHCCHHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
ATRQYSLFDYGSMVLSLIGVSMPIFWLGLVLMIIFSVNLGWLPLSGRLSYDITLEPVTNL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCEEEEEEECCHHHH
YLIDSIIQGNWAAFKDALHHIIMPAFTLSTIPMAIIARMTRSSMLEVLRQDYIRTAKAKG
HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
LSPRAVHYKHALRNALIPIVTIIGLQFSILLGGAILTETIFAWPGIGSWLLNAVYARDFN
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCC
AVQGGTMLIATLFVLINVLVDLLYAVINPRIKV
CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MLHFLIKRLLQVIPTVLGISVLVFFMIHLVPGDPAEMMLGERANEKALTELRQQLGLDKP
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCHHHHHHHHHHHCCCCC
LYVQYGLFMSRLAQGDLGRALRTNEKITTEIATHFPATLELALVAIVFAVTLGMLAGIVS
HHHHHHHHHHHHHCCHHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
ATRQYSLFDYGSMVLSLIGVSMPIFWLGLVLMIIFSVNLGWLPLSGRLSYDITLEPVTNL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCEEEEEEECCHHHH
YLIDSIIQGNWAAFKDALHHIIMPAFTLSTIPMAIIARMTRSSMLEVLRQDYIRTAKAKG
HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
LSPRAVHYKHALRNALIPIVTIIGLQFSILLGGAILTETIFAWPGIGSWLLNAVYARDFN
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCC
AVQGGTMLIATLFVLINVLVDLLYAVINPRIKV
CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; dipeptides [Periplasm]; H2O [C]

Specific reaction: ATP + dipeptides [Periplasm] + H2O = ADP + phosphate + dipeptides [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9680333 [H]