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The map label for this gene is fliD [H]

Identifier: 78356167

GI number: 78356167

Start: 1149612

End: 1151339

Strand: Reverse

Name: fliD [H]

Synonym: Dde_1120

Alternate gene names: 78356167

Gene position: 1151339-1149612 (Counterclockwise)

Preceding gene: 78356168

Following gene: 78356166

Centisome position: 30.87

GC content: 53.18

Gene sequence:

>1728_bases
ATGGCTACAGAACTGCTCTCAGGCGGCATCCGGTTTGACGGTATTTCTTCCGGCACCGATTTCAGCTCCATGATCGATCA
GCTGAAAAAGGTGGAAAGCATCCAGAAAAACCGCATGGAACTGTGGAAAGGCGACTGGGAAAAGCGCCTCGAAGCGTTTC
AGGATATCCGTACAGAAATAGGCAAACTGAAGACCATTGTTGACGGCATGGACACCATCAGCGAGTTCATGACCAAGACA
GCGGCCTCTTCTGACGCCAGCATAGCCACAGCCAAAGCCGATACTCAGGCGCTTGAAGGGTCGTACAAGCTGGAGGTCGG
CCAGCTGGCAACCAATGCCATTCTGACCTACCAGAACGGATTCAGCGACAAAAAAGCCTCCATCAACACCTCGGGGAGCA
CGCAGGAATTCGTATATTCTTACAAGGGCAAGCAGCATACCATCTCTGTTGCCAACGGCACCACGCTGGAAGGGCTGGTC
AACATGATCAACAAAGACTCCCAGAATCCGGGAGTCAGAGCCTCGCTTATCAAAACGGGCGATCAGTACATGTTCCAGCT
CAAAGGGATGGATCTGGGGGCGGGCAACACGCTCAGCATCGATTCTTCCACCTCGCTGACAGCCTTTGACCTTGACCCTG
CGTTCTGGCACCAGCAGGCACCGCAAAACGCCCAGTACCGCATCAACAACTGGCCGGGCGGTTCGTGGCTGGAATCATCC
AGCAACACACTGACCGAAGCCATAGAAGGGCTGACCATCAACCTGCGTGATACCGGCGTGACACAGGTTTCCGTAGACAC
CGACATTGATAAGATCATTGAAAACGTCCATGCATTTGTGGACGGCATGAATGCAGTACGCACCAAAATTAAAGACCTGA
CCAAGGTCAGCGACGCAAAAAAACGGGAAGACGCCACCAAGGCCACCAGCCAGTTTGATGCGGAAAAAGGCTCTGTTCTT
ACAGGCAACTACGGTGTGCAGCTGGTTTCATCACGCCTGAAGCAGATCACATCGAACCGCTCGCCGGGATTCGATTACCA
GTACGAGGAAGACGGAAAGACAAAGGGTGATATTTACAGCTCGCTCGCTCAGATAGGCATACTGACCAACTCGGATGAAA
GCTCGGTCAACAACGGCCTGCTGGAAGTGGACGACGTGAAGCTGCGTGAAGCGCTGGAAAAAACACCGGACGAAGTTGCC
GCTCTGTTTGCCGCCAGCGGTGAAGGGCTTTCAGACAGTGCCGACTTTTCCTACGAATCGCACGTCAACGGCATCACCAA
GCCCGGCAAATATGAAGTTGCATACGAAATCGACGCTTCCGGCAACATTATAAACGCCTCCATAGGTGGCTTTGCCGCCA
AGGTGGAACAGGGCAGCCACCAGATAATCGCCATGGAAGGCCCCGCAAAAGGTCTGGCCGTACGCGTGGATAACATGACG
CAAGGTTCTTACAGCGACGCTGTGCGCCTGCGCCAGGGCAAAATGGGTGAAATTTCCGATACGCTGAAGGAAATGACCTC
GACCGACGGCACGCTGAAAATTCTGGAACGCAACTACAAAGACATCATCTACGAAATTGAAGAAAAAATAGACCGCGAAG
AGACGCGCCTGATGAAATGGGAGCAGAACATGCGCCTTAAATTCTCGCGTCTCGAAGCGACGCTGACCACATACGACAAG
CAGACTCAGGCTCTCAGTTCGGCCATACAGCAGATGAACAAGAGCTAG

Upstream 100 bases:

>100_bases
CGGAGTTATTTTGGCGCCGGAGGCCGGCTGCATGGCATTTTCCTTGCATTTGACCCTGCGGGCAACCCCGTTCAGGAAAA
AAATGCCCGAGGTGTGAAAT

Downstream 100 bases:

>100_bases
ACAGACATACAGGAGACGACCATGCAGAAGGCAGCCCATGCCTATTTCCAGACACAGGTGTCCACCACCTCTCAGGGGCA
GCTTCTTCTTATGCTGTATG

Product: flagellar hook-associated protein 2

Products: NA

Alternate protein names: HAP2; Filament cap protein [H]

Number of amino acids: Translated: 575; Mature: 574

Protein sequence:

>575_residues
MATELLSGGIRFDGISSGTDFSSMIDQLKKVESIQKNRMELWKGDWEKRLEAFQDIRTEIGKLKTIVDGMDTISEFMTKT
AASSDASIATAKADTQALEGSYKLEVGQLATNAILTYQNGFSDKKASINTSGSTQEFVYSYKGKQHTISVANGTTLEGLV
NMINKDSQNPGVRASLIKTGDQYMFQLKGMDLGAGNTLSIDSSTSLTAFDLDPAFWHQQAPQNAQYRINNWPGGSWLESS
SNTLTEAIEGLTINLRDTGVTQVSVDTDIDKIIENVHAFVDGMNAVRTKIKDLTKVSDAKKREDATKATSQFDAEKGSVL
TGNYGVQLVSSRLKQITSNRSPGFDYQYEEDGKTKGDIYSSLAQIGILTNSDESSVNNGLLEVDDVKLREALEKTPDEVA
ALFAASGEGLSDSADFSYESHVNGITKPGKYEVAYEIDASGNIINASIGGFAAKVEQGSHQIIAMEGPAKGLAVRVDNMT
QGSYSDAVRLRQGKMGEISDTLKEMTSTDGTLKILERNYKDIIYEIEEKIDREETRLMKWEQNMRLKFSRLEATLTTYDK
QTQALSSAIQQMNKS

Sequences:

>Translated_575_residues
MATELLSGGIRFDGISSGTDFSSMIDQLKKVESIQKNRMELWKGDWEKRLEAFQDIRTEIGKLKTIVDGMDTISEFMTKT
AASSDASIATAKADTQALEGSYKLEVGQLATNAILTYQNGFSDKKASINTSGSTQEFVYSYKGKQHTISVANGTTLEGLV
NMINKDSQNPGVRASLIKTGDQYMFQLKGMDLGAGNTLSIDSSTSLTAFDLDPAFWHQQAPQNAQYRINNWPGGSWLESS
SNTLTEAIEGLTINLRDTGVTQVSVDTDIDKIIENVHAFVDGMNAVRTKIKDLTKVSDAKKREDATKATSQFDAEKGSVL
TGNYGVQLVSSRLKQITSNRSPGFDYQYEEDGKTKGDIYSSLAQIGILTNSDESSVNNGLLEVDDVKLREALEKTPDEVA
ALFAASGEGLSDSADFSYESHVNGITKPGKYEVAYEIDASGNIINASIGGFAAKVEQGSHQIIAMEGPAKGLAVRVDNMT
QGSYSDAVRLRQGKMGEISDTLKEMTSTDGTLKILERNYKDIIYEIEEKIDREETRLMKWEQNMRLKFSRLEATLTTYDK
QTQALSSAIQQMNKS
>Mature_574_residues
ATELLSGGIRFDGISSGTDFSSMIDQLKKVESIQKNRMELWKGDWEKRLEAFQDIRTEIGKLKTIVDGMDTISEFMTKTA
ASSDASIATAKADTQALEGSYKLEVGQLATNAILTYQNGFSDKKASINTSGSTQEFVYSYKGKQHTISVANGTTLEGLVN
MINKDSQNPGVRASLIKTGDQYMFQLKGMDLGAGNTLSIDSSTSLTAFDLDPAFWHQQAPQNAQYRINNWPGGSWLESSS
NTLTEAIEGLTINLRDTGVTQVSVDTDIDKIIENVHAFVDGMNAVRTKIKDLTKVSDAKKREDATKATSQFDAEKGSVLT
GNYGVQLVSSRLKQITSNRSPGFDYQYEEDGKTKGDIYSSLAQIGILTNSDESSVNNGLLEVDDVKLREALEKTPDEVAA
LFAASGEGLSDSADFSYESHVNGITKPGKYEVAYEIDASGNIINASIGGFAAKVEQGSHQIIAMEGPAKGLAVRVDNMTQ
GSYSDAVRLRQGKMGEISDTLKEMTSTDGTLKILERNYKDIIYEIEEKIDREETRLMKWEQNMRLKFSRLEATLTTYDKQ
TQALSSAIQQMNKS

Specific function: Required for the morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the

COG id: COG1345

COG function: function code N; Flagellar capping protein

Gene ontology:

Cell location: Secreted. Bacterial flagellum [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the fliD family [H]

Homologues:

Organism=Escherichia coli, GI1788233, Length=409, Percent_Identity=26.161369193154, Blast_Score=80, Evalue=5e-16,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010810
- InterPro:   IPR010809
- InterPro:   IPR003481 [H]

Pfam domain/function: PF07196 Flagellin_IN; PF07195 FliD_C; PF02465 FliD_N [H]

EC number: NA

Molecular weight: Translated: 63031; Mature: 62900

Theoretical pI: Translated: 4.69; Mature: 4.69

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MATELLSGGIRFDGISSGTDFSSMIDQLKKVESIQKNRMELWKGDWEKRLEAFQDIRTEI
CCCCHHCCCCEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
GKLKTIVDGMDTISEFMTKTAASSDASIATAKADTQALEGSYKLEVGQLATNAILTYQNG
HHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCHHHHHCCCCEEEHHHHHHCEEEEECCC
FSDKKASINTSGSTQEFVYSYKGKQHTISVANGTTLEGLVNMINKDSQNPGVRASLIKTG
CCCCCCCCCCCCCCHHHHHEECCCEEEEEECCCCHHHHHHHHHCCCCCCCCCEEHEECCC
DQYMFQLKGMDLGAGNTLSIDSSTSLTAFDLDPAFWHQQAPQNAQYRINNWPGGSWLESS
CEEEEEEECCEECCCCEEEECCCCCEEEEECCHHHHHCCCCCCCCEEECCCCCCCCCCCC
SNTLTEAIEGLTINLRDTGVTQVSVDTDIDKIIENVHAFVDGMNAVRTKIKDLTKVSDAK
CCHHHHHHCCCEEEEECCCCEEEEECCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHH
KREDATKATSQFDAEKGSVLTGNYGVQLVSSRLKQITSNRSPGFDYQYEEDGKTKGDIYS
HHHHHHHHHHHCCCCCCCEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHH
SLAQIGILTNSDESSVNNGLLEVDDVKLREALEKTPDEVAALFAASGEGLSDSADFSYES
HHHHHCEEECCCCCHHCCCCEEECHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCHHH
HVNGITKPGKYEVAYEIDASGNIINASIGGFAAKVEQGSHQIIAMEGPAKGLAVRVDNMT
HCCCCCCCCCEEEEEEECCCCCEEEECCCCHHHHCCCCCCEEEEEECCCCCEEEEECCCC
QGSYSDAVRLRQGKMGEISDTLKEMTSTDGTLKILERNYKDIIYEIEEKIDREETRLMKW
CCCHHHHHHHCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHH
EQNMRLKFSRLEATLTTYDKQTQALSSAIQQMNKS
HHCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
ATELLSGGIRFDGISSGTDFSSMIDQLKKVESIQKNRMELWKGDWEKRLEAFQDIRTEI
CCCHHCCCCEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
GKLKTIVDGMDTISEFMTKTAASSDASIATAKADTQALEGSYKLEVGQLATNAILTYQNG
HHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCHHHHHCCCCEEEHHHHHHCEEEEECCC
FSDKKASINTSGSTQEFVYSYKGKQHTISVANGTTLEGLVNMINKDSQNPGVRASLIKTG
CCCCCCCCCCCCCCHHHHHEECCCEEEEEECCCCHHHHHHHHHCCCCCCCCCEEHEECCC
DQYMFQLKGMDLGAGNTLSIDSSTSLTAFDLDPAFWHQQAPQNAQYRINNWPGGSWLESS
CEEEEEEECCEECCCCEEEECCCCCEEEEECCHHHHHCCCCCCCCEEECCCCCCCCCCCC
SNTLTEAIEGLTINLRDTGVTQVSVDTDIDKIIENVHAFVDGMNAVRTKIKDLTKVSDAK
CCHHHHHHCCCEEEEECCCCEEEEECCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHH
KREDATKATSQFDAEKGSVLTGNYGVQLVSSRLKQITSNRSPGFDYQYEEDGKTKGDIYS
HHHHHHHHHHHCCCCCCCEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHH
SLAQIGILTNSDESSVNNGLLEVDDVKLREALEKTPDEVAALFAASGEGLSDSADFSYES
HHHHHCEEECCCCCHHCCCCEEECHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCHHH
HVNGITKPGKYEVAYEIDASGNIINASIGGFAAKVEQGSHQIIAMEGPAKGLAVRVDNMT
HCCCCCCCCCEEEEEEECCCCCEEEECCCCHHHHCCCCCCEEEEEECCCCCEEEEECCCC
QGSYSDAVRLRQGKMGEISDTLKEMTSTDGTLKILERNYKDIIYEIEEKIDREETRLMKW
CCCHHHHHHHCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHH
EQNMRLKFSRLEATLTTYDKQTQALSSAIQQMNKS
HHCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9537320 [H]