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The map label for this gene is rimM

Identifier: 78356144

GI number: 78356144

Start: 1126388

End: 1126918

Strand: Reverse

Name: rimM

Synonym: Dde_1097

Alternate gene names: 78356144

Gene position: 1126918-1126388 (Counterclockwise)

Preceding gene: 78356145

Following gene: 78356143

Centisome position: 30.21

GC content: 57.82

Gene sequence:

>531_bases
ATGGACAAATACGTTCAGATTGGCTTGATCACCAAGCCCCATGGACTTCGGGGGGAAGTCTGCGTCGTTTCTTACGCGGA
CTCCCCTTTTCTCATGCAGGAACGCATCTTTCTGCAGGCGGGCAAAGGCCCCTGCGTGCCTTACCGGGTCAGAAGCAGCC
GCCGGCACTCCGGCACCGAGCTTCTGCTGCTGGAAGGCATAGACGACAGAAATGCAGCGGAAAAACTGCGCCAGCACAAG
GTGCTTATACCGCATGCAGAGCTGCCGGAACTGGAAGATGACGAAGTCTACATTGAGGACATTCTCGGCTTTACCGTGGT
GCTGGATGAAGACGGCAGCACCCTGGGTACCCTGACGGCGTTTTCTGCCCCCACCCCCGAACAGGAAGTGTGGGAGATAA
CAACCCCCGACGGCAAGGAAGTGCTGTTTCCTGCCGCCGAGGAATTTGTGGCAGAAATAGACGTGGACTCCGAGACCATA
CGCATCACCCCGCCGCCCGGCCTGCTGGAGATTTATCTTTCCGGCAGCTGA

Upstream 100 bases:

>100_bases
TCCGCACTATCCTTGGCGCAGCCTCCACAAAGGTCAGAAAGCGTTCTGTTCTGGAAATTCTGGAATAACGCCGGCTGAAT
GAAGGAAGCCTGAAGCGTAG

Downstream 100 bases:

>100_bases
TGCCGTGCGGCGCTGTCTGCGGACAGCCGGGCCGACGCGGCATCACAAAGGCAAAAAAGGCATGCGTTTCAACATCGTCA
CTCTGTTTCCGGAGTATTTC

Product: 16S rRNA processing protein RimM

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 176; Mature: 176

Protein sequence:

>176_residues
MDKYVQIGLITKPHGLRGEVCVVSYADSPFLMQERIFLQAGKGPCVPYRVRSSRRHSGTELLLLEGIDDRNAAEKLRQHK
VLIPHAELPELEDDEVYIEDILGFTVVLDEDGSTLGTLTAFSAPTPEQEVWEITTPDGKEVLFPAAEEFVAEIDVDSETI
RITPPPGLLEIYLSGS

Sequences:

>Translated_176_residues
MDKYVQIGLITKPHGLRGEVCVVSYADSPFLMQERIFLQAGKGPCVPYRVRSSRRHSGTELLLLEGIDDRNAAEKLRQHK
VLIPHAELPELEDDEVYIEDILGFTVVLDEDGSTLGTLTAFSAPTPEQEVWEITTPDGKEVLFPAAEEFVAEIDVDSETI
RITPPPGLLEIYLSGS
>Mature_176_residues
MDKYVQIGLITKPHGLRGEVCVVSYADSPFLMQERIFLQAGKGPCVPYRVRSSRRHSGTELLLLEGIDDRNAAEKLRQHK
VLIPHAELPELEDDEVYIEDILGFTVVLDEDGSTLGTLTAFSAPTPEQEVWEITTPDGKEVLFPAAEEFVAEIDVDSETI
RITPPPGLLEIYLSGS

Specific function: An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after rbfA dur

COG id: COG0806

COG function: function code J; RimM protein, required for 16S rRNA processing

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PRC barrel domain

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RIMM_DESDG (Q313J8)

Other databases:

- EMBL:   CP000112
- RefSeq:   YP_387593.1
- ProteinModelPortal:   Q313J8
- SMR:   Q313J8
- STRING:   Q313J8
- GeneID:   3755446
- GenomeReviews:   CP000112_GR
- KEGG:   dde:Dde_1097
- NMPDR:   fig|207559.3.peg.926
- eggNOG:   COG0806
- HOGENOM:   HBG703775
- OMA:   NLVPFFI
- ProtClustDB:   CLSK704886
- BioCyc:   DDES207559:DDE_1097-MONOMER
- GO:   GO:0005840
- HAMAP:   MF_00014
- InterPro:   IPR011961
- InterPro:   IPR007903
- InterPro:   IPR011033
- InterPro:   IPR002676
- InterPro:   IPR009000
- TIGRFAMs:   TIGR02273

Pfam domain/function: PF05239 PRC; PF01782 RimM; SSF50346 PRCH_cytoplasmic; SSF50447 Translat_factor

EC number: NA

Molecular weight: Translated: 19520; Mature: 19520

Theoretical pI: Translated: 4.20; Mature: 4.20

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDKYVQIGLITKPHGLRGEVCVVSYADSPFLMQERIFLQAGKGPCVPYRVRSSRRHSGTE
CCCEEEEEEEECCCCCCCCEEEEEECCCCCEEEEEEEEECCCCCCCEEEECCCCCCCCCE
LLLLEGIDDRNAAEKLRQHKVLIPHAELPELEDDEVYIEDILGFTVVLDEDGSTLGTLTA
EEEEECCCCCCHHHHHHHCEEECCCCCCCCCCCCCEEEEECCCEEEEEECCCCEEEEEEE
FSAPTPEQEVWEITTPDGKEVLFPAAEEFVAEIDVDSETIRITPPPGLLEIYLSGS
ECCCCCCCCEEEEECCCCCEEEECCHHHHEEEECCCCCEEEEECCCCEEEEEEECC
>Mature Secondary Structure
MDKYVQIGLITKPHGLRGEVCVVSYADSPFLMQERIFLQAGKGPCVPYRVRSSRRHSGTE
CCCEEEEEEEECCCCCCCCEEEEEECCCCCEEEEEEEEECCCCCCCEEEECCCCCCCCCE
LLLLEGIDDRNAAEKLRQHKVLIPHAELPELEDDEVYIEDILGFTVVLDEDGSTLGTLTA
EEEEECCCCCCHHHHHHHCEEECCCCCCCCCCCCCEEEEECCCEEEEEECCCCEEEEEEE
FSAPTPEQEVWEITTPDGKEVLFPAAEEFVAEIDVDSETIRITPPPGLLEIYLSGS
ECCCCCCCCEEEEECCCCCEEEECCHHHHEEEECCCCCEEEEECCCCEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA