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The map label for this gene is ykoW [H]

Identifier: 78356120

GI number: 78356120

Start: 1099716

End: 1100819

Strand: Direct

Name: ykoW [H]

Synonym: Dde_1073

Alternate gene names: 78356120

Gene position: 1099716-1100819 (Clockwise)

Preceding gene: 78356119

Following gene: 78356124

Centisome position: 29.48

GC content: 56.61

Gene sequence:

>1104_bases
ATGAATCAGCTGTTTTCTGCACCGGTTCATGGCCGGTGTCCCCGCTGTGAAGGAACTCCGGAACGCATACCCGACTCCGG
CGTACTGTATATCTGCCCGCCCATTATTCCGTCGTGCGAAGCGCTGCGCCGCTATCTGCAGCAGAAGGCAATGCCCTACA
CAGAGGTGTATCAGGACATTTTCGCCATTCCGTTTGACAGGATGTCGTTGGAGTTTTTTTGTGAAGAGTATCTGGAACAT
ATCGGGTCTCTTGAGCAGAAGGACACCCGCAGCCTGCTGCTGGCGCACGGTGAAGAACTGACCGTACGGCATGTGGCGCG
CATGCGTCCGCTCGAAACGATAGTGGCGCGGCTGCAGGGTGAATGGCTCATAGATATGCTCGACAACGGCCGTCTGGAGA
CGCATTTCCAGCCCATTGTGAACGCCGCATCTCCTGCAGATGTGCATGCTTACGAGTGTCTGGCGCGCGGCATAGATGAA
GACGGCGCGATTATAGGTCCTGCCAGAATGTTCGGGGTGGCCAAGTCCGCGGATCTGCTTTTTAATCTGGACAGAGCGTG
CCGGCTGGCAGCCATAGACGGCATGGGCAGATACGGGCTGGACAGACCGCTTTTCATCAACTTCAATCCCGCAACCATAT
ACAACCCTGTCTACTGCCTGCAGACAACCATGAATGCCATCAGCAAGGCGGGACTGCAGCCGGACATGGTGGTTTTTGAG
GTTGTGGAAAGCGATGAAGTGCAGGACGTCAATCACCTGCTTAATATTCTGCGCTATTACCGCGACCATGGATTTAAAGT
GGCCCTTGACGATCTGGGGGCAGGTTTTTCGTCGCTTAACCTGCTGGCGCGGCTGAAGCCTGACTATGTAAAGCTGGACA
TGGGGCTTGTGCATGATGTGCACCGTGAAGAGTATAAAGCCGTCATAACCGGCAACCTGCTTGCCATGGCCCGCGGGCTG
GGCATAAAGACCATTGCAGAGGGTGTGGAGACCGAAGGCGAGTGGCGCTGGCTGGCGGCCCACGGTGCCGATTATGTGCA
GGGCTTTCTTTTTGCCCGCCCTGCTGCCCCGCCGGATGCGGTCAAGGTTCCCTGCTGCCCGTAA

Upstream 100 bases:

>100_bases
CAAAGTGCGGCACGGCGCGTCTGACGCGCCTGTATGCCTGCGGGTTGTCCGGTGTCTGAAAGGTGTGCATGTCTTTTGAT
CAAGCGAGGTTGCCTGCAGG

Downstream 100 bases:

>100_bases
CTGCGGCACTGCGGACAATAGTAAAGCGGGAAGGCTGTCAGCCTTCCCGCTTTTTTTATATGCAGCCCCGCGGGGCGGTT
TGTCTGCCTGTGCTACACGG

Product: diguanylate phosphodiesterase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 367; Mature: 367

Protein sequence:

>367_residues
MNQLFSAPVHGRCPRCEGTPERIPDSGVLYICPPIIPSCEALRRYLQQKAMPYTEVYQDIFAIPFDRMSLEFFCEEYLEH
IGSLEQKDTRSLLLAHGEELTVRHVARMRPLETIVARLQGEWLIDMLDNGRLETHFQPIVNAASPADVHAYECLARGIDE
DGAIIGPARMFGVAKSADLLFNLDRACRLAAIDGMGRYGLDRPLFINFNPATIYNPVYCLQTTMNAISKAGLQPDMVVFE
VVESDEVQDVNHLLNILRYYRDHGFKVALDDLGAGFSSLNLLARLKPDYVKLDMGLVHDVHREEYKAVITGNLLAMARGL
GIKTIAEGVETEGEWRWLAAHGADYVQGFLFARPAAPPDAVKVPCCP

Sequences:

>Translated_367_residues
MNQLFSAPVHGRCPRCEGTPERIPDSGVLYICPPIIPSCEALRRYLQQKAMPYTEVYQDIFAIPFDRMSLEFFCEEYLEH
IGSLEQKDTRSLLLAHGEELTVRHVARMRPLETIVARLQGEWLIDMLDNGRLETHFQPIVNAASPADVHAYECLARGIDE
DGAIIGPARMFGVAKSADLLFNLDRACRLAAIDGMGRYGLDRPLFINFNPATIYNPVYCLQTTMNAISKAGLQPDMVVFE
VVESDEVQDVNHLLNILRYYRDHGFKVALDDLGAGFSSLNLLARLKPDYVKLDMGLVHDVHREEYKAVITGNLLAMARGL
GIKTIAEGVETEGEWRWLAAHGADYVQGFLFARPAAPPDAVKVPCCP
>Mature_367_residues
MNQLFSAPVHGRCPRCEGTPERIPDSGVLYICPPIIPSCEALRRYLQQKAMPYTEVYQDIFAIPFDRMSLEFFCEEYLEH
IGSLEQKDTRSLLLAHGEELTVRHVARMRPLETIVARLQGEWLIDMLDNGRLETHFQPIVNAASPADVHAYECLARGIDE
DGAIIGPARMFGVAKSADLLFNLDRACRLAAIDGMGRYGLDRPLFINFNPATIYNPVYCLQTTMNAISKAGLQPDMVVFE
VVESDEVQDVNHLLNILRYYRDHGFKVALDDLGAGFSSLNLLARLKPDYVKLDMGLVHDVHREEYKAVITGNLLAMARGL
GIKTIAEGVETEGEWRWLAAHGADYVQGFLFARPAAPPDAVKVPCCP

Specific function: Probable signaling protein whose physiological role is not yet known [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PAS (PER-ARNT-SIM) domain [H]

Homologues:

Organism=Escherichia coli, GI1790496, Length=236, Percent_Identity=30.0847457627119, Blast_Score=107, Evalue=1e-24,
Organism=Escherichia coli, GI226510982, Length=240, Percent_Identity=30.4166666666667, Blast_Score=101, Evalue=7e-23,
Organism=Escherichia coli, GI87081743, Length=258, Percent_Identity=29.8449612403101, Blast_Score=100, Evalue=1e-22,
Organism=Escherichia coli, GI87081845, Length=250, Percent_Identity=29.2, Blast_Score=99, Evalue=6e-22,
Organism=Escherichia coli, GI1787410, Length=223, Percent_Identity=28.6995515695067, Blast_Score=97, Evalue=2e-21,
Organism=Escherichia coli, GI1787541, Length=235, Percent_Identity=27.6595744680851, Blast_Score=97, Evalue=2e-21,
Organism=Escherichia coli, GI87081980, Length=228, Percent_Identity=26.3157894736842, Blast_Score=88, Evalue=1e-18,
Organism=Escherichia coli, GI1788502, Length=269, Percent_Identity=24.907063197026, Blast_Score=85, Evalue=8e-18,
Organism=Escherichia coli, GI87082096, Length=237, Percent_Identity=25.7383966244726, Blast_Score=82, Evalue=6e-17,
Organism=Escherichia coli, GI1786507, Length=232, Percent_Identity=24.1379310344828, Blast_Score=74, Evalue=2e-14,
Organism=Escherichia coli, GI1788849, Length=247, Percent_Identity=23.4817813765182, Blast_Score=73, Evalue=3e-14,
Organism=Escherichia coli, GI1787055, Length=232, Percent_Identity=26.7241379310345, Blast_Score=73, Evalue=3e-14,
Organism=Escherichia coli, GI87081921, Length=241, Percent_Identity=24.4813278008299, Blast_Score=70, Evalue=2e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330
- InterPro:   IPR000014 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT [H]

EC number: NA

Molecular weight: Translated: 41036; Mature: 41036

Theoretical pI: Translated: 5.13; Mature: 5.13

Prosite motif: PS50883 EAL

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.7 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
5.7 %Cys+Met (Translated Protein)
2.7 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
5.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNQLFSAPVHGRCPRCEGTPERIPDSGVLYICPPIIPSCEALRRYLQQKAMPYTEVYQDI
CCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHCCCHHHHHHHH
FAIPFDRMSLEFFCEEYLEHIGSLEQKDTRSLLLAHGEELTVRHVARMRPLETIVARLQG
HHCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHHCHHHHHHHHHCC
EWLIDMLDNGRLETHFQPIVNAASPADVHAYECLARGIDEDGAIIGPARMFGVAKSADLL
CEEEEHHCCCCCHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCEECHHHHHHHHCCHHHH
FNLDRACRLAAIDGMGRYGLDRPLFINFNPATIYNPVYCLQTTMNAISKAGLQPDMVVFE
HHHHHHHHHHHHCCCCCCCCCCCEEEECCCHHHCCCHHHHHHHHHHHHHCCCCCCCEEEE
VVESDEVQDVNHLLNILRYYRDHGFKVALDDLGAGFSSLNLLARLKPDYVKLDMGLVHDV
ECCCCCHHHHHHHHHHHHHHHCCCCEEEEHHHCCCHHHHHHHHHCCCCCEEECHHHHHHH
HREEYKAVITGNLLAMARGLGIKTIAEGVETEGEWRWLAAHGADYVQGFLFARPAAPPDA
HHHHHHHHHHCCHHHHHHCCCHHHHHHCCCCCCCEEEEEECCHHHHHHHHHCCCCCCCCC
VKVPCCP
CCCCCCC
>Mature Secondary Structure
MNQLFSAPVHGRCPRCEGTPERIPDSGVLYICPPIIPSCEALRRYLQQKAMPYTEVYQDI
CCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHCCCHHHHHHHH
FAIPFDRMSLEFFCEEYLEHIGSLEQKDTRSLLLAHGEELTVRHVARMRPLETIVARLQG
HHCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHHCHHHHHHHHHCC
EWLIDMLDNGRLETHFQPIVNAASPADVHAYECLARGIDEDGAIIGPARMFGVAKSADLL
CEEEEHHCCCCCHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCEECHHHHHHHHCCHHHH
FNLDRACRLAAIDGMGRYGLDRPLFINFNPATIYNPVYCLQTTMNAISKAGLQPDMVVFE
HHHHHHHHHHHHCCCCCCCCCCCEEEECCCHHHCCCHHHHHHHHHHHHHCCCCCCCEEEE
VVESDEVQDVNHLLNILRYYRDHGFKVALDDLGAGFSSLNLLARLKPDYVKLDMGLVHDV
ECCCCCHHHHHHHHHHHHHHHCCCCEEEEHHHCCCHHHHHHHHHCCCCCEEECHHHHHHH
HREEYKAVITGNLLAMARGLGIKTIAEGVETEGEWRWLAAHGADYVQGFLFARPAAPPDA
HHHHHHHHHHCCHHHHHHCCCHHHHHHCCCCCCCEEEEEECCHHHHHHHHHCCCCCCCCC
VKVPCCP
CCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9384377; 11728710 [H]