Click here to switch to the map view.

The map label for this gene is atpC

Identifier: 78356031

GI number: 78356031

Start: 1010563

End: 1010967

Strand: Reverse

Name: atpC

Synonym: Dde_0984

Alternate gene names: 78356031

Gene position: 1010967-1010563 (Counterclockwise)

Preceding gene: 78356032

Following gene: 78356030

Centisome position: 27.1

GC content: 59.26

Gene sequence:

>405_bases
ATGGAAAAGTCTCTCCAGCTTGAAATCGTGACACCGGACAAGGTGGTCCTGAGCGAGCAGGTGGACTATGTCGGCGCCCC
TGGATACGAGGGTGAGTTCGGCGTACTGCCCAACCACATCCCGTTCCTTTCGGCTCTGTCCATCGGCAGCCTGTACTACA
AGGCCGGCGGCAAAACCAGATACGCCTTTGTTTCCGGCGGCTTCGCTGAAGTTTCCGACAACAAAGTGACCATTCTGGCC
GAATCCGCTGAACGTGCCGAAGACATCGACATCGAACGCGCACGCAAGGCTCAGCAGCGCGCTGAAGAGCGCCTGAAAGC
CGAACGTGAAAAGATCGACGCCACCCGCGCTGAAGCCGCCCTGAAGCGTGCTCTGGCCCGCCTTCAGGTACGCAATGCAG
CCTAG

Upstream 100 bases:

>100_bases
ACGACCATCTGGCTGAAAACGACTTCTACATGGTCGGCGGTATCGAAATGGCCGTGGAGCGTTATAACCAGCGTCAGCAA
GCCGCGTAAGGAGCTGACCT

Downstream 100 bases:

>100_bases
CTGCATGCAGCGGTAGCAACCAGTATGACAACGGGCCGGCTTTACAGCCGGCCCGTTTTTTTACTCCCTCAGCCCGTCCT
GAAAACACACTCCTGCACCT

Product: F0F1 ATP synthase subunit epsilon

Products: ADP; phosphate; H+

Alternate protein names: ATP synthase F1 sector epsilon subunit; F-ATPase epsilon subunit

Number of amino acids: Translated: 134; Mature: 134

Protein sequence:

>134_residues
MEKSLQLEIVTPDKVVLSEQVDYVGAPGYEGEFGVLPNHIPFLSALSIGSLYYKAGGKTRYAFVSGGFAEVSDNKVTILA
ESAERAEDIDIERARKAQQRAEERLKAEREKIDATRAEAALKRALARLQVRNAA

Sequences:

>Translated_134_residues
MEKSLQLEIVTPDKVVLSEQVDYVGAPGYEGEFGVLPNHIPFLSALSIGSLYYKAGGKTRYAFVSGGFAEVSDNKVTILA
ESAERAEDIDIERARKAQQRAEERLKAEREKIDATRAEAALKRALARLQVRNAA
>Mature_134_residues
MEKSLQLEIVTPDKVVLSEQVDYVGAPGYEGEFGVLPNHIPFLSALSIGSLYYKAGGKTRYAFVSGGFAEVSDNKVTILA
ESAERAEDIDIERARKAQQRAEERLKAEREKIDATRAEAALKRALARLQVRNAA

Specific function: Produces ATP from ADP in the presence of a proton gradient across the membrane

COG id: COG0355

COG function: function code C; F0F1-type ATP synthase, epsilon subunit (mitochondrial delta subunit)

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ATPase epsilon chain family

Homologues:

Organism=Escherichia coli, GI1790169, Length=131, Percent_Identity=34.3511450381679, Blast_Score=87, Evalue=3e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): ATPE_DESDG (Q313W1)

Other databases:

- EMBL:   CP000112
- RefSeq:   YP_387480.1
- ProteinModelPortal:   Q313W1
- SMR:   Q313W1
- STRING:   Q313W1
- GeneID:   3755556
- GenomeReviews:   CP000112_GR
- KEGG:   dde:Dde_0984
- NMPDR:   fig|207559.3.peg.486
- eggNOG:   COG0355
- HOGENOM:   HBG663981
- OMA:   EMVSVRA
- ProtClustDB:   PRK13446
- BioCyc:   DDES207559:DDE_0984-MONOMER
- HAMAP:   MF_00530
- InterPro:   IPR001469
- InterPro:   IPR020547
- InterPro:   IPR020546
- Gene3D:   G3DSA:1.20.5.440
- Gene3D:   G3DSA:2.60.15.10
- PANTHER:   PTHR13822
- ProDom:   PD000944
- TIGRFAMs:   TIGR01216

Pfam domain/function: PF00401 ATP-synt_DE; PF02823 ATP-synt_DE_N; SSF46604 ATPsynt_DE; SSF51344 ATPsynt_DE

EC number: 3.6.3.14

Molecular weight: Translated: 14739; Mature: 14739

Theoretical pI: Translated: 5.99; Mature: 5.99

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
0.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
0.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEKSLQLEIVTPDKVVLSEQVDYVGAPGYEGEFGVLPNHIPFLSALSIGSLYYKAGGKTR
CCCCEEEEEECCCCEEHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHEEEECCCCEE
YAFVSGGFAEVSDNKVTILAESAERAEDIDIERARKAQQRAEERLKAEREKIDATRAEAA
EEEEECCEEEECCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LKRALARLQVRNAA
HHHHHHHHHHCCCC
>Mature Secondary Structure
MEKSLQLEIVTPDKVVLSEQVDYVGAPGYEGEFGVLPNHIPFLSALSIGSLYYKAGGKTR
CCCCEEEEEECCCCEEHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHEEEECCCCEE
YAFVSGGFAEVSDNKVTILAESAERAEDIDIERARKAQQRAEERLKAEREKIDATRAEAA
EEEEECCEEEECCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LKRALARLQVRNAA
HHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: Borate; diphosphate; HCO3- [C]

Metal ions: Co2+; Fe2+; Mn2+; Zn2+ [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; H2O; H+

Specific reaction: ATP + H2O + H+(in) = ADP + phosphate + H+(out)

General reaction: Phosphorous acid anhydride hydrolysis [C]

Inhibitor: Ca2+; CN-; Efrapeptin; Ethidiumbromide; Guanidines analogs; Oligomycin; Quercetin; Trialkyl tin derivatives; Venturicidin [C]

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA