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The map label for this gene is sodB [H]

Identifier: 78355929

GI number: 78355929

Start: 913371

End: 914090

Strand: Reverse

Name: sodB [H]

Synonym: Dde_0882

Alternate gene names: 78355929

Gene position: 914090-913371 (Counterclockwise)

Preceding gene: 78355930

Following gene: 78355927

Centisome position: 24.5

GC content: 58.06

Gene sequence:

>720_bases
ATGCAACACGGTGAATTCTGTCGGACAGTGACCATGGACAGGCGTAAATTCATACAGCTGGCAGCTGCCGGAACAGGTCT
GCTTGCCGGTGCGGCTGTTCTGGGGCTTCCCCTTCACGCCCGTGCGGCCGAAGCGTATCCTCTTCCGCCGCTGCCGTATG
CGGAAAACGCGCTGGAACCGTACATCTCGGCACGCACCATCAGCTTTCATTACGGCAAACACACCAAAGCCTACTATGAC
AAAACAAACACGCTTGCAGCCGGTATGTCAGGCTTGGCACTGCACGAAGTGTTTCTGAAGGCTGCAGGCAAACCGGACAG
TGCTGCGCTGCTCAACAACGCCGCACAGGCATGGAACCACACGTTTTACTGGAACGGCATGAAGCCCTCAGGCGGTGGCG
CCCCCGGAAAACGCATGATGGAACACCTGCAGGCATCCTTCGGCGGGTACGAACAATTCCGTGAAGCCTTTTCCGCCGCG
GCCAAAGGACAGTTCGGCAGCGGCTGGGCGTGGCTTGTGCGCAACAGCGACGGAACACTGGAAGTGGTGAAAACCGCCAA
TGCCGAAAATCCCATGGTGCAGGGCAAAACACCGGTGCTGGTCTGTGATGTCTGGGAGCACGCCTATTATCTGGACTATC
AGAACCGGCGTGCGGATTACGTTTCCGCGTTTCTTGACCATCTGGTCGACTGGGACGCGGCGGAAAAGCACCTGACCTGA

Upstream 100 bases:

>100_bases
TGCATGGCTGCGGTTATTCTTGACAGCTTAGCGCACCCCGTCCATTGTCATAAAATAGAAAAAGTTTTTTTCTTGTTCAT
CTCTGACGCCGGAGGGCATA

Downstream 100 bases:

>100_bases
ACCATGCCGCAGCAGCATGGCAGCCAGACACAATAACCGGACAGACAAACGGACCGGAGCATTGAGCCAGGAAAACTGAA
CCGGAAACAGAGGCCGGTGC

Product: superoxide dismutase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 239; Mature: 239

Protein sequence:

>239_residues
MQHGEFCRTVTMDRRKFIQLAAAGTGLLAGAAVLGLPLHARAAEAYPLPPLPYAENALEPYISARTISFHYGKHTKAYYD
KTNTLAAGMSGLALHEVFLKAAGKPDSAALLNNAAQAWNHTFYWNGMKPSGGGAPGKRMMEHLQASFGGYEQFREAFSAA
AKGQFGSGWAWLVRNSDGTLEVVKTANAENPMVQGKTPVLVCDVWEHAYYLDYQNRRADYVSAFLDHLVDWDAAEKHLT

Sequences:

>Translated_239_residues
MQHGEFCRTVTMDRRKFIQLAAAGTGLLAGAAVLGLPLHARAAEAYPLPPLPYAENALEPYISARTISFHYGKHTKAYYD
KTNTLAAGMSGLALHEVFLKAAGKPDSAALLNNAAQAWNHTFYWNGMKPSGGGAPGKRMMEHLQASFGGYEQFREAFSAA
AKGQFGSGWAWLVRNSDGTLEVVKTANAENPMVQGKTPVLVCDVWEHAYYLDYQNRRADYVSAFLDHLVDWDAAEKHLT
>Mature_239_residues
MQHGEFCRTVTMDRRKFIQLAAAGTGLLAGAAVLGLPLHARAAEAYPLPPLPYAENALEPYISARTISFHYGKHTKAYYD
KTNTLAAGMSGLALHEVFLKAAGKPDSAALLNNAAQAWNHTFYWNGMKPSGGGAPGKRMMEHLQASFGGYEQFREAFSAA
AKGQFGSGWAWLVRNSDGTLEVVKTANAENPMVQGKTPVLVCDVWEHAYYLDYQNRRADYVSAFLDHLVDWDAAEKHLT

Specific function: Destroys radicals which are normally produced within the cells and which are toxic to biological systems [H]

COG id: COG0605

COG function: function code P; Superoxide dismutase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the iron/manganese superoxide dismutase family [H]

Homologues:

Organism=Homo sapiens, GI67782307, Length=206, Percent_Identity=36.8932038834951, Blast_Score=130, Evalue=1e-30,
Organism=Homo sapiens, GI67782305, Length=206, Percent_Identity=36.8932038834951, Blast_Score=130, Evalue=1e-30,
Organism=Homo sapiens, GI67782309, Length=205, Percent_Identity=30.2439024390244, Blast_Score=92, Evalue=3e-19,
Organism=Escherichia coli, GI1787946, Length=196, Percent_Identity=47.4489795918367, Blast_Score=191, Evalue=3e-50,
Organism=Escherichia coli, GI1790342, Length=201, Percent_Identity=37.8109452736318, Blast_Score=133, Evalue=1e-32,
Organism=Caenorhabditis elegans, GI17506561, Length=184, Percent_Identity=33.695652173913, Blast_Score=103, Evalue=1e-22,
Organism=Caenorhabditis elegans, GI17569479, Length=183, Percent_Identity=34.4262295081967, Blast_Score=103, Evalue=1e-22,
Organism=Saccharomyces cerevisiae, GI6321796, Length=207, Percent_Identity=31.8840579710145, Blast_Score=98, Evalue=1e-21,
Organism=Drosophila melanogaster, GI17136812, Length=197, Percent_Identity=30.9644670050761, Blast_Score=97, Evalue=7e-21,

Paralogues:

None

Copy number: 2020 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 20 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). 900 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001189
- InterPro:   IPR019833
- InterPro:   IPR019832
- InterPro:   IPR019831 [H]

Pfam domain/function: PF02777 Sod_Fe_C; PF00081 Sod_Fe_N [H]

EC number: =1.15.1.1 [H]

Molecular weight: Translated: 26211; Mature: 26211

Theoretical pI: Translated: 7.77; Mature: 7.77

Prosite motif: PS00088 SOD_MN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQHGEFCRTVTMDRRKFIQLAAAGTGLLAGAAVLGLPLHARAAEAYPLPPLPYAENALEP
CCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHCCCCCCCCCCCCCCHHHHHH
YISARTISFHYGKHTKAYYDKTNTLAAGMSGLALHEVFLKAAGKPDSAALLNNAAQAWNH
HHCEEEEEEECCCCCHHHHCCCHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHCC
TFYWNGMKPSGGGAPGKRMMEHLQASFGGYEQFREAFSAAAKGQFGSGWAWLVRNSDGTL
EEEECCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCEEEEEECCCCCE
EVVKTANAENPMVQGKTPVLVCDVWEHAYYLDYQNRRADYVSAFLDHLVDWDAAEKHLT
EEEEECCCCCCEECCCCCEEEEEECCCEEEECCCCCHHHHHHHHHHHHHCCCCHHHCCC
>Mature Secondary Structure
MQHGEFCRTVTMDRRKFIQLAAAGTGLLAGAAVLGLPLHARAAEAYPLPPLPYAENALEP
CCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHCCCCCCCCCCCCCCHHHHHH
YISARTISFHYGKHTKAYYDKTNTLAAGMSGLALHEVFLKAAGKPDSAALLNNAAQAWNH
HHCEEEEEEECCCCCHHHHCCCHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHCC
TFYWNGMKPSGGGAPGKRMMEHLQASFGGYEQFREAFSAAAKGQFGSGWAWLVRNSDGTL
EEEECCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCEEEEEECCCCCE
EVVKTANAENPMVQGKTPVLVCDVWEHAYYLDYQNRRADYVSAFLDHLVDWDAAEKHLT
EEEEECCCCCCEECCCCCEEEEEECCCEEEECCCCCHHHHHHHHHHHHHCCCCHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905231; 9298645 [H]