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The map label for this gene is mdcF [H]

Identifier: 78355927

GI number: 78355927

Start: 910642

End: 911595

Strand: Reverse

Name: mdcF [H]

Synonym: Dde_0880

Alternate gene names: 78355927

Gene position: 911595-910642 (Counterclockwise)

Preceding gene: 78355929

Following gene: 78355922

Centisome position: 24.44

GC content: 60.17

Gene sequence:

>954_bases
ATGCTTACAATTTTTTACACCATCATGCCTGTCTTTCTGCTCATCGTGCTGGGCGGCGTCATACAACGGGCAGGATGGCT
GCCCCGCGACGGGGCCGCAGCGCTGAACCAGTATGTGTACAGAATAGCGCTGCCCGCGCTGCTGTTCATCGCCATCGCGC
AGTCTTCGCCGGAGCGCCTGTTCGAAGGCAGCTTCATTGCGGCGCTGCTGGCCGGACTGGGTATCTGCTACCTGCTGTCA
TTCGCGCTGTTCCGCATATTTTTCGGGGCGCGCACTCCGCTGGCCGGATTTCAGGCGTTTACCACCACATTTGCCAATGC
CGCTTTTCTGGGGCTGCCCATTCTGATGGCTCTCTTTCCGGACAATCCCGACGCGGTACTGGCCATGGGCATTTACACCC
TGTTCACCATGCCTTTTGTGCTTACGGGCATAGCCATGCTTGAGCTGGGGGTGGAACGCCCCGAGGGTACCGGCAGAACC
CGCATGTGGTTTTCCATAGGTGCCTCGCTGGCGCGCAATCCTATTCTTATCGGCGCTCTGGCCGGACTTGCCGTATCACT
GAGCGGCACAACGCTGCCGCACTGGCTTGCTTCTGCTGCCGCAATGCTGGGAGATACCGCCTCGCCTTGTGCTCTGGTGG
CTGTGGGCATGGTGCTGGCCATGCAGCTGCAGATGAGCGGCGGCCCGAAAGCCCAGCCGGTATATCAGGCGGTTTCCGGC
GTCATCAAACTGGCCGTGCATCCGCTGCTGGTCTGGGTATGCATGCGGTTTTTCAACGTGCAGGGACATTGGGTGCCCAT
GGGTGTGCTGCTGGCAGCCATGCCCACCGGCACGCTGGCTTTTGTTCTGGCCGAGGCATACGACACTGACTGTGCCAACA
CGTCGGCATCGGTACTGCTGACCACGGTTTTTTCGTTTCTCAGCATCTCGGCGGCCATGGCGCTGATGAGCTGA

Upstream 100 bases:

>100_bases
TCCGGCGTATTGAAAGCCCTGCCAAGAGGGGGTATGCTGATCGTCCTTCTTTGCCGGGCGGTCATGCCGTCCGGCTGCCA
TTCATCAACCGGACACTCTC

Downstream 100 bases:

>100_bases
CGCACCGGCATGTCCGGATGTATTTCCCCTGTCCCGTCATACCGCAAAAGCCCGCGAACAAGTTCGCGGGCTTTTCTTAA
TTACAATATACAGAGCCACA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 317; Mature: 317

Protein sequence:

>317_residues
MLTIFYTIMPVFLLIVLGGVIQRAGWLPRDGAAALNQYVYRIALPALLFIAIAQSSPERLFEGSFIAALLAGLGICYLLS
FALFRIFFGARTPLAGFQAFTTTFANAAFLGLPILMALFPDNPDAVLAMGIYTLFTMPFVLTGIAMLELGVERPEGTGRT
RMWFSIGASLARNPILIGALAGLAVSLSGTTLPHWLASAAAMLGDTASPCALVAVGMVLAMQLQMSGGPKAQPVYQAVSG
VIKLAVHPLLVWVCMRFFNVQGHWVPMGVLLAAMPTGTLAFVLAEAYDTDCANTSASVLLTTVFSFLSISAAMALMS

Sequences:

>Translated_317_residues
MLTIFYTIMPVFLLIVLGGVIQRAGWLPRDGAAALNQYVYRIALPALLFIAIAQSSPERLFEGSFIAALLAGLGICYLLS
FALFRIFFGARTPLAGFQAFTTTFANAAFLGLPILMALFPDNPDAVLAMGIYTLFTMPFVLTGIAMLELGVERPEGTGRT
RMWFSIGASLARNPILIGALAGLAVSLSGTTLPHWLASAAAMLGDTASPCALVAVGMVLAMQLQMSGGPKAQPVYQAVSG
VIKLAVHPLLVWVCMRFFNVQGHWVPMGVLLAAMPTGTLAFVLAEAYDTDCANTSASVLLTTVFSFLSISAAMALMS
>Mature_317_residues
MLTIFYTIMPVFLLIVLGGVIQRAGWLPRDGAAALNQYVYRIALPALLFIAIAQSSPERLFEGSFIAALLAGLGICYLLS
FALFRIFFGARTPLAGFQAFTTTFANAAFLGLPILMALFPDNPDAVLAMGIYTLFTMPFVLTGIAMLELGVERPEGTGRT
RMWFSIGASLARNPILIGALAGLAVSLSGTTLPHWLASAAAMLGDTASPCALVAVGMVLAMQLQMSGGPKAQPVYQAVSG
VIKLAVHPLLVWVCMRFFNVQGHWVPMGVLLAAMPTGTLAFVLAEAYDTDCANTSASVLLTTVFSFLSISAAMALMS

Specific function: Unknown

COG id: COG0679

COG function: function code R; Predicted permeases

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the auxin efflux carrier (TC 2.A.69) family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004776 [H]

Pfam domain/function: PF03547 Mem_trans [H]

EC number: NA

Molecular weight: Translated: 33569; Mature: 33569

Theoretical pI: Translated: 7.95; Mature: 7.95

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
5.0 %Met     (Translated Protein)
6.3 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
5.0 %Met     (Mature Protein)
6.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLTIFYTIMPVFLLIVLGGVIQRAGWLPRDGAAALNQYVYRIALPALLFIAIAQSSPERL
CEEHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
FEGSFIAALLAGLGICYLLSFALFRIFFGARTPLAGFQAFTTTFANAAFLGLPILMALFP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC
DNPDAVLAMGIYTLFTMPFVLTGIAMLELGVERPEGTGRTRMWFSIGASLARNPILIGAL
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEHHHHHHHHHHCCCHHHHHH
AGLAVSLSGTTLPHWLASAAAMLGDTASPCALVAVGMVLAMQLQMSGGPKAQPVYQAVSG
HHHHEECCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHH
VIKLAVHPLLVWVCMRFFNVQGHWVPMGVLLAAMPTGTLAFVLAEAYDTDCANTSASVLL
HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCHHHHHH
TTVFSFLSISAAMALMS
HHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MLTIFYTIMPVFLLIVLGGVIQRAGWLPRDGAAALNQYVYRIALPALLFIAIAQSSPERL
CEEHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
FEGSFIAALLAGLGICYLLSFALFRIFFGARTPLAGFQAFTTTFANAAFLGLPILMALFP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC
DNPDAVLAMGIYTLFTMPFVLTGIAMLELGVERPEGTGRTRMWFSIGASLARNPILIGAL
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEHHHHHHHHHHCCCHHHHHH
AGLAVSLSGTTLPHWLASAAAMLGDTASPCALVAVGMVLAMQLQMSGGPKAQPVYQAVSG
HHHHEECCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHH
VIKLAVHPLLVWVCMRFFNVQGHWVPMGVLLAAMPTGTLAFVLAEAYDTDCANTSASVLL
HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCHHHHHH
TTVFSFLSISAAMALMS
HHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 10858449; 11481430 [H]