Click here to switch to the map view.

The map label for this gene is yabJ [H]

Identifier: 78355856

GI number: 78355856

Start: 829263

End: 829637

Strand: Reverse

Name: yabJ [H]

Synonym: Dde_0809

Alternate gene names: 78355856

Gene position: 829637-829263 (Counterclockwise)

Preceding gene: 78355857

Following gene: 78355855

Centisome position: 22.24

GC content: 57.6

Gene sequence:

>375_bases
ATGTTCAAAGCTATTGCCACAGACAAAGCACCCGGGGCCATCGGCCCCTACTCTCAGGGCACCGAAACGCAAGACCTTGT
CTTCACTTCGGGCCAGCTGCCCATCGACCCTGCCACCAAAGTCATGCCCGAAGACATTTCGGAACAGACCAGACAGGCGC
TCGAAAACGTCAAATCCGTGCTTGAAGCCGCAGGCTGCAGCCTGAAGCAGGTATTCAAGACCACGGTCTTTCTGGCCGAC
ATGGCCGACTTTCCCAAAGTGAACGAAGTGTATGCCACTTACTTCAGCGAGCCTTTTCCCGCACGCAGCTGCGTTCAGGT
TGCTGCCCTGCCGCTGGGCGCGGGAGTGGAAATAGAAGTGGTTGCGCGCCGGTAA

Upstream 100 bases:

>100_bases
ACCGCACCATGCTGCCGACAACTTTTTTGCACCCGCTGCAGGGCGATACGTGACGGACGCACTGCACCGGGCGCAAGGAA
GCAAAAAAGGAGACCCGGCT

Downstream 100 bases:

>100_bases
TTCAGGGGGAAGCCGGACTGTCCCGGGAAGCCGCCGTTGAAGGGGCGGCGGCTCCTTACACCATCGGAGGAGACTATCAT
ATCCAGACGCAAAAGCGAAT

Product: endoribonuclease L-PSP

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 124; Mature: 124

Protein sequence:

>124_residues
MFKAIATDKAPGAIGPYSQGTETQDLVFTSGQLPIDPATKVMPEDISEQTRQALENVKSVLEAAGCSLKQVFKTTVFLAD
MADFPKVNEVYATYFSEPFPARSCVQVAALPLGAGVEIEVVARR

Sequences:

>Translated_124_residues
MFKAIATDKAPGAIGPYSQGTETQDLVFTSGQLPIDPATKVMPEDISEQTRQALENVKSVLEAAGCSLKQVFKTTVFLAD
MADFPKVNEVYATYFSEPFPARSCVQVAALPLGAGVEIEVVARR
>Mature_124_residues
MFKAIATDKAPGAIGPYSQGTETQDLVFTSGQLPIDPATKVMPEDISEQTRQALENVKSVLEAAGCSLKQVFKTTVFLAD
MADFPKVNEVYATYFSEPFPARSCVQVAALPLGAGVEIEVVARR

Specific function: Unknown

COG id: COG0251

COG function: function code J; Putative translation initiation inhibitor, yjgF family

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RutC family [H]

Homologues:

Organism=Homo sapiens, GI5032215, Length=121, Percent_Identity=49.5867768595041, Blast_Score=126, Evalue=4e-30,
Organism=Escherichia coli, GI87082396, Length=127, Percent_Identity=49.6062992125984, Blast_Score=135, Evalue=1e-33,
Organism=Escherichia coli, GI87082213, Length=127, Percent_Identity=50.3937007874016, Blast_Score=131, Evalue=1e-32,
Organism=Escherichia coli, GI1787245, Length=111, Percent_Identity=33.3333333333333, Blast_Score=74, Evalue=3e-15,
Organism=Caenorhabditis elegans, GI71982075, Length=118, Percent_Identity=52.5423728813559, Blast_Score=128, Evalue=8e-31,
Organism=Caenorhabditis elegans, GI25148896, Length=118, Percent_Identity=52.5423728813559, Blast_Score=128, Evalue=8e-31,
Organism=Caenorhabditis elegans, GI71982068, Length=118, Percent_Identity=52.5423728813559, Blast_Score=127, Evalue=1e-30,
Organism=Saccharomyces cerevisiae, GI6322138, Length=118, Percent_Identity=44.0677966101695, Blast_Score=108, Evalue=3e-25,
Organism=Saccharomyces cerevisiae, GI6320899, Length=101, Percent_Identity=46.5346534653465, Blast_Score=105, Evalue=2e-24,
Organism=Drosophila melanogaster, GI19921376, Length=121, Percent_Identity=47.1074380165289, Blast_Score=105, Evalue=6e-24,

Paralogues:

None

Copy number: 1320 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013813
- InterPro:   IPR006175
- InterPro:   IPR006056
- InterPro:   IPR019897 [H]

Pfam domain/function: PF01042 Ribonuc_L-PSP [H]

EC number: NA

Molecular weight: Translated: 13327; Mature: 13327

Theoretical pI: Translated: 4.48; Mature: 4.48

Prosite motif: PS01094 UPF0076

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFKAIATDKAPGAIGPYSQGTETQDLVFTSGQLPIDPATKVMPEDISEQTRQALENVKSV
CCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
LEAAGCSLKQVFKTTVFLADMADFPKVNEVYATYFSEPFPARSCVQVAALPLGAGVEIEV
HHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCEEEE
VARR
EECC
>Mature Secondary Structure
MFKAIATDKAPGAIGPYSQGTETQDLVFTSGQLPIDPATKVMPEDISEQTRQALENVKSV
CCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
LEAAGCSLKQVFKTTVFLADMADFPKVNEVYATYFSEPFPARSCVQVAALPLGAGVEIEV
HHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCEEEE
VARR
EECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7584024; 9384377; 10368157; 14594850; 10557275 [H]