| Definition | Desulfovibrio desulfuricans subsp. desulfuricans str. G20 chromosome, complete genome. |
|---|---|
| Accession | NC_007519 |
| Length | 3,730,232 |
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The map label for this gene is rsbU [H]
Identifier: 78355768
GI number: 78355768
Start: 739334
End: 741991
Strand: Reverse
Name: rsbU [H]
Synonym: Dde_0721
Alternate gene names: 78355768
Gene position: 741991-739334 (Counterclockwise)
Preceding gene: 78355771
Following gene: 78355767
Centisome position: 19.89
GC content: 60.65
Gene sequence:
>2658_bases ATGAATATCCGCTGGAAATTTTTCTTTGTCCTGCTGGGGGCCAGTGTTGTGCCCCTGCTTGTGGTCAGCATACTTGTGGC CGTGCTGGCAGATAACATAGAACGCAATGTCATACGCGAAACACGCGCCGAACTGACAGAACGTGCCAGCACCGCCATGC TCAATATGGCGCGGAACTACGCCACCGGCATGATGCAGGACATCCAGTCGCTCAGCGTCATCGCATACACCCTCAAACGC GAAGCCGAACGGCTGGCCGCCGTTCCCGCTCCGGCCGCGGCCGCCGCGGCCGATGACACCGCGGTGCTCTTTTCTTCTGA CTTCGACCCTGAGCTGCCGTTTCCTCCGGACCTTAAAGAATTTGCTTCGTACACCGGCAAACCGCGCGGCATGATGATGC AGACTGCCAGCGGACTGGTAAGCTTCGGCAGCATGTCGTTTCATGTGCCGGGCGGCAACCCCGATGCACGGCAGAAACAG CGTGCCGCCCGTCTGGCCGGTCTGCTGCCCGTGCTGCGTGACGTGCGCGGTGTGTTCGGCGATTATATCTACCGTATGTT CGTGGGACTGGAGGACGGCCTGAGCGGTACATACCCCGGACTGGGCGAAATTCCGCCGGCCTATGATCCCCGCGAACGCC CGTGGTACCGGGCCGCCGTCGAACGCGACGATATCACATGGACATCCCCCGTGGTCGACGCCGTCACCGGCAGGCTTACT CTGACCATTTCCATTCCTCTGCGCGGTGCGGACGGCAGGCTGCTGGGTGTGGCGGGGCTGGACATACTGATGCAGGAGGG ACTGCAGGCTCACTCCGTCATTTCAAGCTGGAGCAAAGACCTGGAGATGATGCTGGTCTACCGCGATCCGGCAGAAGGCG AAAACGCTCCCATCCATGTTGTGGGGCGCACGCTGCGCGACGCGGAAGGCAGGCAGATGTGGCGCATGATGCAGCGCGAA GCGCCTTTTCCCATGCCGGAGGGGCGTACTCTGGACAACCTGCGCAGCCGCATGAGCCACCGGCACGCGGATGTCATGGA GCTGGAGTTCAATGACGAGCCGTCACTGCTGGCCTATGCCCCCATCACCGACCAGCTGACGGTTGTCATCATCACGCCGC GCAGCGTCATACAGGAAGTGCCCGACACCATCAGCAACATGCTGACCGAAAGCGACGAAGCCGTGAATCTTGTGGTCAGC ATGTCGCTGATTCTCGTCATGCTGGGAGCGTTTGTCATATCGCTGCTGGCCTCCCGCGCCACCACCAGACCGCTGCTGGA CATCGTGCAGGCCGCGCGCCGCCTGTCTCAGGGAGACTGGTCAGTTCATATTCCGGCCCGTCTGGGAGACGAACGTGACG AGGTGATTCAGGCATTCAACGAAATGGGCCCCAAACTGAGCAAACAGATACAAATCCAGCAGGCACTGGACGTGGCTCAT GAAGTACAGTCCAGCCTGCTGCCCGCAGAAGCGCCTGCTTTCGAGGGCTGGGATATTTCCGGCCGCACCCGCTACTGTGA CGAAACCGGCGGCGATTATTACGATTATATAACATGGATGGACGGACAGGAGCCTGCGCTTTCCGTAGTGCTGGGTGATG TTTCCGGCCACGGGCTGCCATCTGCCCTGCTCATGGCCACAGGCCGTTCGCTGCTGCGGGGGCAGGCAGACAGTCTGTGC TGCACCGCCCGCCGTGTGGAAAGGGTCAATGCCATTCTTTCCGCCGACGTCAACGGCACAGGACGCTTTATCACCCTTTT CGTGCTGGATATCCGCCAGCGCTCCCGGCAGGTGCGCTGGGTGCGCGCAGGGCACGATCCGGCCATGGTATACGATCCGG CGACGGACGTTTTTTCGCTGCTGCAGGGCTGCGGGCTGCCGCTGGGCGTCGTGCCCGATGCGACGTACAACGCAGAAGAA ACCACCCTGCCCGAAAACGCCGTTGTGCTGATAGGTACGGACGGGATATGGGAAGCAGTGAATGCAGAAGGTGAAATGTT CGGCAAGGACCGGCTGCAGGAGCTGCTGCGCAGCCACGCCCATCTGTGCGCACACGAGATAAGCAAGGCCGTGCTGGACG CCGTTGACACGTTTTGTCAGGACGCCCCCCGCATGGATGATGTGACGCTGGTTGTCCTCAAACCGCAGCAGCACGGGTGC ACGCAGTCCGCCCCCGCGGTGCCTCAGGGCGATACCCCCCCTGAGGAAGCAAGCGTGCATGTGCGGCTGACTTCGGCACT GGATATTCCCGCGCTGGCGGAAGCCGTGCAGACACTGTGCGACAGCACCGCCTGTTCGCGGCGGGTACGCTTTTCCTTTA CGCTGGCCGTGGATGAACTGGTGACCAATGTTTTTGAACACGGCGCCGCCGACGGCGTACAGCGCAGGGTCGATGCATGG TTCTGGCTGCAGGACGGTTTTCTGCGGGCACGGCTGGAAGACAACGGCAATCCGTTCAACTGCACCAAAGCCGCTCCGCC CGAACTGAATGTCCCGCTTGAAAAACGTAAAAAGCCCGTAGGCGGGCTGGGCATTCATCTGGTAAAACAGTACATGGATG ATTTCCGCTATACACGAAAAAAAGATAACAACATCATAGTGCTGGGAAAACGGCTCGACAACGGGTCAAAGCATGACGAT GAAAGGAGCCACGCATGA
Upstream 100 bases:
>100_bases GCACTTTCTAAATCTTCCAAGGGCTGCTATAAAAAACGATGCGCCGGACGTCCCGCCTGCGCCTGCGGGATGCAACCCGA GACTCTTTTCCGGAGCCGTC
Downstream 100 bases:
>100_bases CGCTGACCACCATTACGCACGATAACGTGACGATTCTGGAAATGCGTGAACGGCTGGACGGACAAGGTACGCAGCAGCTG GAAAAAACCGTTGAAGAACT
Product: serine phosphatase
Products: NA
Alternate protein names: Sigma factor sigB regulation protein rsbU [H]
Number of amino acids: Translated: 885; Mature: 885
Protein sequence:
>885_residues MNIRWKFFFVLLGASVVPLLVVSILVAVLADNIERNVIRETRAELTERASTAMLNMARNYATGMMQDIQSLSVIAYTLKR EAERLAAVPAPAAAAAADDTAVLFSSDFDPELPFPPDLKEFASYTGKPRGMMMQTASGLVSFGSMSFHVPGGNPDARQKQ RAARLAGLLPVLRDVRGVFGDYIYRMFVGLEDGLSGTYPGLGEIPPAYDPRERPWYRAAVERDDITWTSPVVDAVTGRLT LTISIPLRGADGRLLGVAGLDILMQEGLQAHSVISSWSKDLEMMLVYRDPAEGENAPIHVVGRTLRDAEGRQMWRMMQRE APFPMPEGRTLDNLRSRMSHRHADVMELEFNDEPSLLAYAPITDQLTVVIITPRSVIQEVPDTISNMLTESDEAVNLVVS MSLILVMLGAFVISLLASRATTRPLLDIVQAARRLSQGDWSVHIPARLGDERDEVIQAFNEMGPKLSKQIQIQQALDVAH EVQSSLLPAEAPAFEGWDISGRTRYCDETGGDYYDYITWMDGQEPALSVVLGDVSGHGLPSALLMATGRSLLRGQADSLC CTARRVERVNAILSADVNGTGRFITLFVLDIRQRSRQVRWVRAGHDPAMVYDPATDVFSLLQGCGLPLGVVPDATYNAEE TTLPENAVVLIGTDGIWEAVNAEGEMFGKDRLQELLRSHAHLCAHEISKAVLDAVDTFCQDAPRMDDVTLVVLKPQQHGC TQSAPAVPQGDTPPEEASVHVRLTSALDIPALAEAVQTLCDSTACSRRVRFSFTLAVDELVTNVFEHGAADGVQRRVDAW FWLQDGFLRARLEDNGNPFNCTKAAPPELNVPLEKRKKPVGGLGIHLVKQYMDDFRYTRKKDNNIIVLGKRLDNGSKHDD ERSHA
Sequences:
>Translated_885_residues MNIRWKFFFVLLGASVVPLLVVSILVAVLADNIERNVIRETRAELTERASTAMLNMARNYATGMMQDIQSLSVIAYTLKR EAERLAAVPAPAAAAAADDTAVLFSSDFDPELPFPPDLKEFASYTGKPRGMMMQTASGLVSFGSMSFHVPGGNPDARQKQ RAARLAGLLPVLRDVRGVFGDYIYRMFVGLEDGLSGTYPGLGEIPPAYDPRERPWYRAAVERDDITWTSPVVDAVTGRLT LTISIPLRGADGRLLGVAGLDILMQEGLQAHSVISSWSKDLEMMLVYRDPAEGENAPIHVVGRTLRDAEGRQMWRMMQRE APFPMPEGRTLDNLRSRMSHRHADVMELEFNDEPSLLAYAPITDQLTVVIITPRSVIQEVPDTISNMLTESDEAVNLVVS MSLILVMLGAFVISLLASRATTRPLLDIVQAARRLSQGDWSVHIPARLGDERDEVIQAFNEMGPKLSKQIQIQQALDVAH EVQSSLLPAEAPAFEGWDISGRTRYCDETGGDYYDYITWMDGQEPALSVVLGDVSGHGLPSALLMATGRSLLRGQADSLC CTARRVERVNAILSADVNGTGRFITLFVLDIRQRSRQVRWVRAGHDPAMVYDPATDVFSLLQGCGLPLGVVPDATYNAEE TTLPENAVVLIGTDGIWEAVNAEGEMFGKDRLQELLRSHAHLCAHEISKAVLDAVDTFCQDAPRMDDVTLVVLKPQQHGC TQSAPAVPQGDTPPEEASVHVRLTSALDIPALAEAVQTLCDSTACSRRVRFSFTLAVDELVTNVFEHGAADGVQRRVDAW FWLQDGFLRARLEDNGNPFNCTKAAPPELNVPLEKRKKPVGGLGIHLVKQYMDDFRYTRKKDNNIIVLGKRLDNGSKHDD ERSHA >Mature_885_residues MNIRWKFFFVLLGASVVPLLVVSILVAVLADNIERNVIRETRAELTERASTAMLNMARNYATGMMQDIQSLSVIAYTLKR EAERLAAVPAPAAAAAADDTAVLFSSDFDPELPFPPDLKEFASYTGKPRGMMMQTASGLVSFGSMSFHVPGGNPDARQKQ RAARLAGLLPVLRDVRGVFGDYIYRMFVGLEDGLSGTYPGLGEIPPAYDPRERPWYRAAVERDDITWTSPVVDAVTGRLT LTISIPLRGADGRLLGVAGLDILMQEGLQAHSVISSWSKDLEMMLVYRDPAEGENAPIHVVGRTLRDAEGRQMWRMMQRE APFPMPEGRTLDNLRSRMSHRHADVMELEFNDEPSLLAYAPITDQLTVVIITPRSVIQEVPDTISNMLTESDEAVNLVVS MSLILVMLGAFVISLLASRATTRPLLDIVQAARRLSQGDWSVHIPARLGDERDEVIQAFNEMGPKLSKQIQIQQALDVAH EVQSSLLPAEAPAFEGWDISGRTRYCDETGGDYYDYITWMDGQEPALSVVLGDVSGHGLPSALLMATGRSLLRGQADSLC CTARRVERVNAILSADVNGTGRFITLFVLDIRQRSRQVRWVRAGHDPAMVYDPATDVFSLLQGCGLPLGVVPDATYNAEE TTLPENAVVLIGTDGIWEAVNAEGEMFGKDRLQELLRSHAHLCAHEISKAVLDAVDTFCQDAPRMDDVTLVVLKPQQHGC TQSAPAVPQGDTPPEEASVHVRLTSALDIPALAEAVQTLCDSTACSRRVRFSFTLAVDELVTNVFEHGAADGVQRRVDAW FWLQDGFLRARLEDNGNPFNCTKAAPPELNVPLEKRKKPVGGLGIHLVKQYMDDFRYTRKKDNNIIVLGKRLDNGSKHDD ERSHA
Specific function: Positive regulator of sigma-B activity. Dephosphorylates rsbV in response to environmental stress conveyed from the rsbXST module [H]
COG id: COG2208
COG function: function code TK; Serine phosphatase RsbU, regulator of sigma subunit
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 1 PP2C-like domain [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR017944 - InterPro: IPR001932 - InterPro: IPR014787 - InterPro: IPR010822 - ProDom: PD685490 [H]
Pfam domain/function: PF08673 RsbU_N; PF07228 SpoIIE [H]
EC number: =3.1.3.3 [H]
Molecular weight: Translated: 97458; Mature: 97458
Theoretical pI: Translated: 5.00; Mature: 5.00
Prosite motif: PS50885 HAMP
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 3.3 %Met (Translated Protein) 4.4 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 3.3 %Met (Mature Protein) 4.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNIRWKFFFVLLGASVVPLLVVSILVAVLADNIERNVIRETRAELTERASTAMLNMARNY CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ATGMMQDIQSLSVIAYTLKREAERLAAVPAPAAAAAADDTAVLFSSDFDPELPFPPDLKE HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCEEEEECCCCCCCCCCCCHHH FASYTGKPRGMMMQTASGLVSFGSMSFHVPGGNPDARQKQRAARLAGLLPVLRDVRGVFG HHHHCCCCCCHHHHHHHHHHEECCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH DYIYRMFVGLEDGLSGTYPGLGEIPPAYDPRERPWYRAAVERDDITWTSPVVDAVTGRLT HHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCHHHHHCCCEEE LTISIPLRGADGRLLGVAGLDILMQEGLQAHSVISSWSKDLEMMLVYRDPAEGENAPIHV EEEEEEEECCCCCEEEHHHHHHHHHCCCHHHHHHHHHHHCEEEEEEEECCCCCCCCCEEE VGRTLRDAEGRQMWRMMQREAPFPMPEGRTLDNLRSRMSHRHADVMELEFNDEPSLLAYA EEHHHHCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCEEEEC PITDQLTVVIITPRSVIQEVPDTISNMLTESDEAVNLVVSMSLILVMLGAFVISLLASRA CCCCCEEEEEECCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC TTRPLLDIVQAARRLSQGDWSVHIPARLGDERDEVIQAFNEMGPKLSKQIQIQQALDVAH CCHHHHHHHHHHHHHCCCCCEEEECHHCCCCHHHHHHHHHHHCHHHHHHHHHHHHHHHHH EVQSSLLPAEAPAFEGWDISGRTRYCDETGGDYYDYITWMDGQEPALSVVLGDVSGHGLP HHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCEEEEEEECCCCCCCH SALLMATGRSLLRGQADSLCCTARRVERVNAILSADVNGTGRFITLFVLDIRQRSRQVRW HHHHHHHCHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEHHHHHHHCCEEE VRAGHDPAMVYDPATDVFSLLQGCGLPLGVVPDATYNAEETTLPENAVVLIGTDGIWEAV EECCCCCCEEECCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCHHHHH NAEGEMFGKDRLQELLRSHAHLCAHEISKAVLDAVDTFCQDAPRMDDVTLVVLKPQQHGC CCCCHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCC TQSAPAVPQGDTPPEEASVHVRLTSALDIPALAEAVQTLCDSTACSRRVRFSFTLAVDEL CCCCCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHCCEEEEEEEHHHHHH VTNVFEHGAADGVQRRVDAWFWLQDGFLRARLEDNGNPFNCTKAAPPELNVPLEKRKKPV HHHHHHCCCHHHHHHHHHHHEEEECCEEEEEECCCCCCEECCCCCCCCCCCCHHHHCCCC GGLGIHLVKQYMDDFRYTRKKDNNIIVLGKRLDNGSKHDDERSHA CCHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCC >Mature Secondary Structure MNIRWKFFFVLLGASVVPLLVVSILVAVLADNIERNVIRETRAELTERASTAMLNMARNY CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ATGMMQDIQSLSVIAYTLKREAERLAAVPAPAAAAAADDTAVLFSSDFDPELPFPPDLKE HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCEEEEECCCCCCCCCCCCHHH FASYTGKPRGMMMQTASGLVSFGSMSFHVPGGNPDARQKQRAARLAGLLPVLRDVRGVFG HHHHCCCCCCHHHHHHHHHHEECCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH DYIYRMFVGLEDGLSGTYPGLGEIPPAYDPRERPWYRAAVERDDITWTSPVVDAVTGRLT HHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCHHHHHCCCEEE LTISIPLRGADGRLLGVAGLDILMQEGLQAHSVISSWSKDLEMMLVYRDPAEGENAPIHV EEEEEEEECCCCCEEEHHHHHHHHHCCCHHHHHHHHHHHCEEEEEEEECCCCCCCCCEEE VGRTLRDAEGRQMWRMMQREAPFPMPEGRTLDNLRSRMSHRHADVMELEFNDEPSLLAYA EEHHHHCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCEEEEC PITDQLTVVIITPRSVIQEVPDTISNMLTESDEAVNLVVSMSLILVMLGAFVISLLASRA CCCCCEEEEEECCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC TTRPLLDIVQAARRLSQGDWSVHIPARLGDERDEVIQAFNEMGPKLSKQIQIQQALDVAH CCHHHHHHHHHHHHHCCCCCEEEECHHCCCCHHHHHHHHHHHCHHHHHHHHHHHHHHHHH EVQSSLLPAEAPAFEGWDISGRTRYCDETGGDYYDYITWMDGQEPALSVVLGDVSGHGLP HHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCEEEEEEECCCCCCCH SALLMATGRSLLRGQADSLCCTARRVERVNAILSADVNGTGRFITLFVLDIRQRSRQVRW HHHHHHHCHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEHHHHHHHCCEEE VRAGHDPAMVYDPATDVFSLLQGCGLPLGVVPDATYNAEETTLPENAVVLIGTDGIWEAV EECCCCCCEEECCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCHHHHH NAEGEMFGKDRLQELLRSHAHLCAHEISKAVLDAVDTFCQDAPRMDDVTLVVLKPQQHGC CCCCHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCC TQSAPAVPQGDTPPEEASVHVRLTSALDIPALAEAVQTLCDSTACSRRVRFSFTLAVDEL CCCCCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHCCEEEEEEEHHHHHH VTNVFEHGAADGVQRRVDAWFWLQDGFLRARLEDNGNPFNCTKAAPPELNVPLEKRKKPV HHHHHHCCCHHHHHHHHHHHEEEECCEEEEEECCCCCCEECCCCCCCCCCCCHHHHCCCC GGLGIHLVKQYMDDFRYTRKKDNNIIVLGKRLDNGSKHDDERSHA CCHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8002610; 8002609; 9384377; 8824586; 9786195; 12499568 [H]