| Definition | Desulfovibrio desulfuricans subsp. desulfuricans str. G20 chromosome, complete genome. |
|---|---|
| Accession | NC_007519 |
| Length | 3,730,232 |
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The map label for this gene is hypF2 [H]
Identifier: 78355602
GI number: 78355602
Start: 575543
End: 577876
Strand: Reverse
Name: hypF2 [H]
Synonym: Dde_0555
Alternate gene names: 78355602
Gene position: 577876-575543 (Counterclockwise)
Preceding gene: 78355605
Following gene: 78355600
Centisome position: 15.49
GC content: 61.87
Gene sequence:
>2334_bases ATGGCTGCAGCAACAATCCGCAGAAAATACGTCATCTCCGGACAGGTACAGGGTGTCGGCTTCCGGCCCTTTGTCTTCCG CATCGCCCGCGATCACGGCATCACGGGCACGGTGTCCAACACCTCGCAGGGAGTATTCATCGAAGCACAGGGCACGCCGC AGGCCGTTGCCGCATTCGGTACCGACCTGACGGACAAGCTGCCGCCGCTGGCGCGGGTTGTGTCGCGCACGGAAGAAGAT ATCCCCCCCCGTGAAGACGAGCAGCTGTTCACCATTGTGGCCAGCGAAGGGGGCAGCGGGCAGAATGTGCTCATCAGCGC GGACGTGGCCACCTGTCAGGACTGTCTGCGCGATATGTTCGACCCGTCGGACAGACGTTACCTGTATCCCTTTACCAACT GTACCAACTGCGGCCCGCGTTACACCATTACGCGGGCCATTCCGTATGACAGAGACAAAACGTCCATGGCGTGTTTTCCG CTGTGCCCTCAATGCCGCGAAGAATACGAAAACCCCATGGACAGAAGATTCCACGCCCAGCCCAACGCCTGTCCGAAATG CGGCCCGCATGTGTGGCTTGCCTCGGCGGACGGCACGCAACTGGCCCGCGACACGGAAGCTGTTGTCCAGACGGCAAAGG CACTGGCCAAAGGCCATATTGCCGCCATCAAAGGGCTGGGGGGCTTTCATCTGGCATGCGACGCCACCGCCACCGCAGCG GTGGACAGGTTGCGCGCACGCAAAAAAAGACCCGGCAAACCGCTGGCCGTCATGGTGCCCGACATGGCAGCAGCTCAGGC TCTGGCCCACATCGGCAGCGGCGAAGCGGCCCTGCTGCAGTCAGTGGAACGCCCCATTGTGCTGTGCCGGCTAAAACAGG GCACCCCGCTGGCTCCGCAGGTCAGCCCCCATACGGACCATGTGGGGCTTATGCTGCCTTATACGCCGCTGCACCATGTA CTTTTTCATCTGTACCGCGAAATTCTGCCGCATGAAGCCTGCGCCGCGCTGGTCATGACTTCCGGCAACATGAGCAGCGA ACCCATCAGTCTGGGAAACAGGGAAGCGCTGCTGCGCCTGCACGACATTGCCGATATTTTTCTGCTGCACAACCGCGACA TTCTCATCCGCACCGACGACTCCGTGGTGCGCGTCAACCCCGACACGCACGAACCGCAGTTTCTGCGCAGAGCCCGCGGC TACACCCCCCGCCCTGTCTTTCTGGACGGTGAAGGGCCGTGCGTCATGGCCACCGGTCCCGAGCTGAAAAGCACCCTTTG CTACACGCGGGGTGATCAGGCTTTTGTCAGCCAGCACATAGGCGATCTGCAGAACCTTGAATCGTTCGGATTTTACCGTG AAATCGCACGGCACCTGCAGTCCGTGCTGGAAGTGACTCCGCAGGCGGTGGTGCACGATCTGCATCCCGACTACCTGACC ACCAGCTATGCCGAAGGCCGCGCGCAGCGCGACGGCATTCCCGCGCTGAGTCTGCAGCACCATTATGCGCACATATACAG CGTACTGGCAGAAAACAGATTTTCCGGGCCGGTGCTGGGCATTGCGCTGGACGGCACAGGATACGGCGAAGACGGTACCA TATGGGGCGGAGAACTGCTGTATGTAGACAACAGCCGGCTGGACCATGAACGGCTGGGACATCTTGCCCCCATGCTGCTG CCCGGCGGCGAGGCCGCCATACGTGAGCCCTGGCGCATCGCACAGGGAATACTGTGGCAGAACGGCACAACCGGCCCCGG AGACATACCCTGGCCGTGGCAGGAGCAGTTCAGAGATGCGGCGCGCGTTCTGCCGCAGGTCATGGAGCGCAGACTGAACA CTCCGCTGACAAGCAGTTGCGGGCGTCTGTTCGACGCGGTATCCGCCATGCTGGGCATATGTATTTCAGTCACATACGAA GGACAGGCGGCCATAATGCTGGAGCGCATACAGGACATGGGCGTGACAGCCCCCTACCCATGCCCCATGCGTACCGATGT GCAGCCGCTGATGCTCGACACACACGCCCTGTTCATGGCCGCATATGCCGACTGGCTGCAAAATGTTCCCGCAGGTGTCA TCAGCCGCCGCTTCCATCTGGGTCTCATGCATGGTCTGGCAGAAGCCGCCGGCAGTCTGGCGGAAGTCATGGACATTGCC ACGGTGGGGCTTTCCGGCGGCGTGATGCAGAACAGAACCATAAGCGCCGAACTGCCGCCGCTGCTGCGCCGTCGCGGGCT CTCTGTACTGGTGCACCGTGAACTGCCGCCCGGCGACGGCTGCATTTCGCTGGGACAGGCAGACTGGGGCCGCCGCATGC TGATGCAGCAGTAA
Upstream 100 bases:
>100_bases ACAGACTACATGCAGCACAAAAAGATAGCAATACTCCTATTTTGCCGCGCAGTATCACCAAAGGCTTTCCCACCGGCTGG GAATAGGCTATGAATTATAC
Downstream 100 bases:
>100_bases CAACCCCCCTCGTTTCTCTGCGCGGCTGCCGCGCCGCCCGTCTTTACAGGGCCCTGTCCAGATTCACCATGAAATCCTGC ACGTTGGTCAGTATGGCGTG
Product: (NiFe) hydrogenase maturation protein HypF
Products: NA
Alternate protein names: Carbamoyl phosphate-converting enzyme hypF2; [NiFe]-hydrogenase maturation factor hypF2; Hydrogenase maturation protein hypF2 [H]
Number of amino acids: Translated: 777; Mature: 776
Protein sequence:
>777_residues MAAATIRRKYVISGQVQGVGFRPFVFRIARDHGITGTVSNTSQGVFIEAQGTPQAVAAFGTDLTDKLPPLARVVSRTEED IPPREDEQLFTIVASEGGSGQNVLISADVATCQDCLRDMFDPSDRRYLYPFTNCTNCGPRYTITRAIPYDRDKTSMACFP LCPQCREEYENPMDRRFHAQPNACPKCGPHVWLASADGTQLARDTEAVVQTAKALAKGHIAAIKGLGGFHLACDATATAA VDRLRARKKRPGKPLAVMVPDMAAAQALAHIGSGEAALLQSVERPIVLCRLKQGTPLAPQVSPHTDHVGLMLPYTPLHHV LFHLYREILPHEACAALVMTSGNMSSEPISLGNREALLRLHDIADIFLLHNRDILIRTDDSVVRVNPDTHEPQFLRRARG YTPRPVFLDGEGPCVMATGPELKSTLCYTRGDQAFVSQHIGDLQNLESFGFYREIARHLQSVLEVTPQAVVHDLHPDYLT TSYAEGRAQRDGIPALSLQHHYAHIYSVLAENRFSGPVLGIALDGTGYGEDGTIWGGELLYVDNSRLDHERLGHLAPMLL PGGEAAIREPWRIAQGILWQNGTTGPGDIPWPWQEQFRDAARVLPQVMERRLNTPLTSSCGRLFDAVSAMLGICISVTYE GQAAIMLERIQDMGVTAPYPCPMRTDVQPLMLDTHALFMAAYADWLQNVPAGVISRRFHLGLMHGLAEAAGSLAEVMDIA TVGLSGGVMQNRTISAELPPLLRRRGLSVLVHRELPPGDGCISLGQADWGRRMLMQQ
Sequences:
>Translated_777_residues MAAATIRRKYVISGQVQGVGFRPFVFRIARDHGITGTVSNTSQGVFIEAQGTPQAVAAFGTDLTDKLPPLARVVSRTEED IPPREDEQLFTIVASEGGSGQNVLISADVATCQDCLRDMFDPSDRRYLYPFTNCTNCGPRYTITRAIPYDRDKTSMACFP LCPQCREEYENPMDRRFHAQPNACPKCGPHVWLASADGTQLARDTEAVVQTAKALAKGHIAAIKGLGGFHLACDATATAA VDRLRARKKRPGKPLAVMVPDMAAAQALAHIGSGEAALLQSVERPIVLCRLKQGTPLAPQVSPHTDHVGLMLPYTPLHHV LFHLYREILPHEACAALVMTSGNMSSEPISLGNREALLRLHDIADIFLLHNRDILIRTDDSVVRVNPDTHEPQFLRRARG YTPRPVFLDGEGPCVMATGPELKSTLCYTRGDQAFVSQHIGDLQNLESFGFYREIARHLQSVLEVTPQAVVHDLHPDYLT TSYAEGRAQRDGIPALSLQHHYAHIYSVLAENRFSGPVLGIALDGTGYGEDGTIWGGELLYVDNSRLDHERLGHLAPMLL PGGEAAIREPWRIAQGILWQNGTTGPGDIPWPWQEQFRDAARVLPQVMERRLNTPLTSSCGRLFDAVSAMLGICISVTYE GQAAIMLERIQDMGVTAPYPCPMRTDVQPLMLDTHALFMAAYADWLQNVPAGVISRRFHLGLMHGLAEAAGSLAEVMDIA TVGLSGGVMQNRTISAELPPLLRRRGLSVLVHRELPPGDGCISLGQADWGRRMLMQQ >Mature_776_residues AAATIRRKYVISGQVQGVGFRPFVFRIARDHGITGTVSNTSQGVFIEAQGTPQAVAAFGTDLTDKLPPLARVVSRTEEDI PPREDEQLFTIVASEGGSGQNVLISADVATCQDCLRDMFDPSDRRYLYPFTNCTNCGPRYTITRAIPYDRDKTSMACFPL CPQCREEYENPMDRRFHAQPNACPKCGPHVWLASADGTQLARDTEAVVQTAKALAKGHIAAIKGLGGFHLACDATATAAV DRLRARKKRPGKPLAVMVPDMAAAQALAHIGSGEAALLQSVERPIVLCRLKQGTPLAPQVSPHTDHVGLMLPYTPLHHVL FHLYREILPHEACAALVMTSGNMSSEPISLGNREALLRLHDIADIFLLHNRDILIRTDDSVVRVNPDTHEPQFLRRARGY TPRPVFLDGEGPCVMATGPELKSTLCYTRGDQAFVSQHIGDLQNLESFGFYREIARHLQSVLEVTPQAVVHDLHPDYLTT SYAEGRAQRDGIPALSLQHHYAHIYSVLAENRFSGPVLGIALDGTGYGEDGTIWGGELLYVDNSRLDHERLGHLAPMLLP GGEAAIREPWRIAQGILWQNGTTGPGDIPWPWQEQFRDAARVLPQVMERRLNTPLTSSCGRLFDAVSAMLGICISVTYEG QAAIMLERIQDMGVTAPYPCPMRTDVQPLMLDTHALFMAAYADWLQNVPAGVISRRFHLGLMHGLAEAAGSLAEVMDIAT VGLSGGVMQNRTISAELPPLLRRRGLSVLVHRELPPGDGCISLGQADWGRRMLMQQ
Specific function: Along with hypE, it catalyzes the synthesis of the CN ligands of the active site iron of [NiFe]-hydrogenases using carbamoylphosphate as a substrate. It functions as a carbamoyl transferase using carbamoylphosphate as a substrate and transferring the carb
COG id: COG0068
COG function: function code O; Hydrogenase maturation factor
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 YrdC-like domain [H]
Homologues:
Organism=Escherichia coli, GI2367152, Length=771, Percent_Identity=42.0233463035019, Blast_Score=476, Evalue=1e-135,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001792 - InterPro: IPR017968 - InterPro: IPR004421 - InterPro: IPR017945 - InterPro: IPR006070 - InterPro: IPR011125 [H]
Pfam domain/function: PF00708 Acylphosphatase; PF01300 Sua5_yciO_yrdC; PF07503 zf-HYPF [H]
EC number: NA
Molecular weight: Translated: 85180; Mature: 85048
Theoretical pI: Translated: 6.74; Mature: 6.74
Prosite motif: PS00150 ACYLPHOSPHATASE_1 ; PS51160 ACYLPHOSPHATASE_3 ; PS51163 YRDC
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.3 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 5.3 %Cys+Met (Translated Protein) 2.3 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 5.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAAATIRRKYVISGQVQGVGFRPFVFRIARDHGITGTVSNTSQGVFIEAQGTPQAVAAFG CCCHHHEEEEEEECEECCCCCCHHHHHHHHCCCCEEEECCCCCCEEEEECCCCHHHHHHC TDLTDKLPPLARVVSRTEEDIPPREDEQLFTIVASEGGSGQNVLISADVATCQDCLRDMF CCCHHCCCHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCEEEEECCHHHHHHHHHHHC DPSDRRYLYPFTNCTNCGPRYTITRAIPYDRDKTSMACFPLCPQCREEYENPMDRRFHAQ CCCCCEEEEECCCCCCCCCCEEEEECCCCCCCCCCEEECCCCHHHHHHHCCHHHHEECCC PNACPKCGPHVWLASADGTQLARDTEAVVQTAKALAKGHIAAIKGLGGFHLACDATATAA CCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHCCHHEEECCCCEEEEECCHHHHH VDRLRARKKRPGKPLAVMVPDMAAAQALAHIGSGEAALLQSVERPIVLCRLKQGTPLAPQ HHHHHHHHCCCCCCEEEECCCHHHHHHHHHCCCCHHHHHHHHCCCEEEEEECCCCCCCCC VSPHTDHVGLMLPYTPLHHVLFHLYREILPHEACAALVMTSGNMSSEPISLGNREALLRL CCCCCCCEEEEECCCHHHHHHHHHHHHHCCHHHHHHHEEECCCCCCCCCCCCCHHHHHHH HDIADIFLLHNRDILIRTDDSVVRVNPDTHEPQFLRRARGYTPRPVFLDGEGPCVMATGP HHHHEEEEEECCEEEEECCCCEEEECCCCCCHHHHHHHCCCCCCEEEECCCCCEEEECCC ELKSTLCYTRGDQAFVSQHIGDLQNLESFGFYREIARHLQSVLEVTPQAVVHDLHPDYLT CHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHCCCCHHH TSYAEGRAQRDGIPALSLQHHYAHIYSVLAENRFSGPVLGIALDGTGYGEDGTIWGGELL CCHHCCCHHHCCCCEEHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCEECCEEE YVDNSRLDHERLGHLAPMLLPGGEAAIREPWRIAQGILWQNGTTGPGDIPWPWQEQFRDA EEECCCCCHHHHHHHCCEEECCCCHHHCCHHHHHHHHEECCCCCCCCCCCCCHHHHHHHH ARVLPQVMERRLNTPLTSSCGRLFDAVSAMLGICISVTYEGQAAIMLERIQDMGVTAPYP HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHEEEEECCCHHHHHHHHHHCCCCCCCC CPMRTDVQPLMLDTHALFMAAYADWLQNVPAGVISRRFHLGLMHGLAEAAGSLAEVMDIA CCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH TVGLSGGVMQNRTISAELPPLLRRRGLSVLVHRELPPGDGCISLGQADWGRRMLMQQ HHCCCCCCCCCCEECCCCCHHHHHCCCEEEEEECCCCCCCEEECCCCCHHHHHHCCC >Mature Secondary Structure AAATIRRKYVISGQVQGVGFRPFVFRIARDHGITGTVSNTSQGVFIEAQGTPQAVAAFG CCHHHEEEEEEECEECCCCCCHHHHHHHHCCCCEEEECCCCCCEEEEECCCCHHHHHHC TDLTDKLPPLARVVSRTEEDIPPREDEQLFTIVASEGGSGQNVLISADVATCQDCLRDMF CCCHHCCCHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCEEEEECCHHHHHHHHHHHC DPSDRRYLYPFTNCTNCGPRYTITRAIPYDRDKTSMACFPLCPQCREEYENPMDRRFHAQ CCCCCEEEEECCCCCCCCCCEEEEECCCCCCCCCCEEECCCCHHHHHHHCCHHHHEECCC PNACPKCGPHVWLASADGTQLARDTEAVVQTAKALAKGHIAAIKGLGGFHLACDATATAA CCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHCCHHEEECCCCEEEEECCHHHHH VDRLRARKKRPGKPLAVMVPDMAAAQALAHIGSGEAALLQSVERPIVLCRLKQGTPLAPQ HHHHHHHHCCCCCCEEEECCCHHHHHHHHHCCCCHHHHHHHHCCCEEEEEECCCCCCCCC VSPHTDHVGLMLPYTPLHHVLFHLYREILPHEACAALVMTSGNMSSEPISLGNREALLRL CCCCCCCEEEEECCCHHHHHHHHHHHHHCCHHHHHHHEEECCCCCCCCCCCCCHHHHHHH HDIADIFLLHNRDILIRTDDSVVRVNPDTHEPQFLRRARGYTPRPVFLDGEGPCVMATGP HHHHEEEEEECCEEEEECCCCEEEECCCCCCHHHHHHHCCCCCCEEEECCCCCEEEECCC ELKSTLCYTRGDQAFVSQHIGDLQNLESFGFYREIARHLQSVLEVTPQAVVHDLHPDYLT CHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHCCCCHHH TSYAEGRAQRDGIPALSLQHHYAHIYSVLAENRFSGPVLGIALDGTGYGEDGTIWGGELL CCHHCCCHHHCCCCEEHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCEECCEEE YVDNSRLDHERLGHLAPMLLPGGEAAIREPWRIAQGILWQNGTTGPGDIPWPWQEQFRDA EEECCCCCHHHHHHHCCEEECCCCHHHCCHHHHHHHHEECCCCCCCCCCCCCHHHHHHHH ARVLPQVMERRLNTPLTSSCGRLFDAVSAMLGICISVTYEGQAAIMLERIQDMGVTAPYP HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHEEEEECCCHHHHHHHHHHCCCCCCCC CPMRTDVQPLMLDTHALFMAAYADWLQNVPAGVISRRFHLGLMHGLAEAAGSLAEVMDIA CCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH TVGLSGGVMQNRTISAELPPLLRRRGLSVLVHRELPPGDGCISLGQADWGRRMLMQQ HHCCCCCCCCCCEECCCCCHHHHHCCCEEEEEECCCCCCCEEECCCCCHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9799289; 12948488 [H]