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The map label for this gene is dppB [H]

Identifier: 78355321

GI number: 78355321

Start: 264722

End: 265897

Strand: Reverse

Name: dppB [H]

Synonym: Dde_0274

Alternate gene names: 78355321

Gene position: 265897-264722 (Counterclockwise)

Preceding gene: 78355322

Following gene: 78355320

Centisome position: 7.13

GC content: 55.95

Gene sequence:

>1176_bases
ATGTCGCGGAGCGGGCCGTCAGGTCCGCTCCGCTTTGTGCAAAGACGCTTTGTAGGGAAGGCAAACAACTCCTGCTTGTT
GTCCCCGCAAAGCGTCTTTAGGACAGGCGCCATAAGGAACCGGCCCAAAGGCCGGTTCCCGCTTGTCTGCCAGACGGCCA
ACCACAGTCATCTAACCCTCAAACCCCGCAAGCACTCTATGATCGCTTTTATTGTTCGACGGGTGACACAGGCGCTTATC
GTCATGTTTGTCATCAGCTTCATCGGGTTTGCCATCAAACACTCGCTTGGCGACCCTGTGCGTGAAATGGTGGGCGTCAG
CGTTTCTGTACAGGAACGTGAGGCCCTGCGTGAGCAACTGGGGTTGAACGATCCCTACCTTGTCCAGTGGGGGCGTTTTG
TCAAAAACGCCGCTCAGGGCGATCTGGGTCAATCGTTCTTTTACCGCAAGCCCGCAATGGAAGTCATTCTCGACAAGGCT
CCGGCCACGCTCGAACTGGTTTTCTGCAGCACACTGCTCATTCTGCTCATCTCAACCCCTGTGGGCGTGTATGCGGCCTA
CCGGCCCAACTCGCCGTTATCGCGTTTTTTCATGGGCTTCAGCGTTGTCGGTGTTTCCATTCCGGTCTTTCTGACAGCCA
TCCTGCTCATCTACATATTCGCGGTGGAACTGCACTGGCTGCCATCATACGGCAGAGGAGAAACCGTAACCCTTTTCGGT
TTCTGGAGCACCGGCCTGCTTACGCTTGACGGGCTCAAACACCTCATCCTGCCCAGCATCGCGCTTTCTTCCATCATGCT
GCCGCTTTTTATCCGGCTTATCCGCGCAGAAATGAAGGAAGTGCTGGAAACAGAGTACGTCAAGTTCGCCCGCGCCAAAG
GGCTGCGCGAACGCAGAGTGCTCATGGTGCACGCATTTAAAAACACGCTTCTGCCGGTCATTACCGTGGGCGGCGTGCAG
ATAGGCCTCATGATCGCCTACACCATTCTCACCGAAACGGTTTTTCAGTGGCAGGGCATGGGCTTTATGTTCATCGAAGC
CGTCGAACGATCCGACACCGCCCTGCTGGTGGCCTACATGGTTTTCGTGGGGGCTCTTTTCGTGGTGGTGAATACGGTGG
TGGACATCATATACGGACTGGTGAACCCCATGGTCCGCGTCGCGGGGAGGAAATAG

Upstream 100 bases:

>100_bases
CTTTCGTGGGCAGTGGGCCCCGGCGTGAAGAATGCAAAGGAAATCGTCAACGTGATGGACTTCCCGTACTTTGGCGACCT
TGTAATAGAATAAACCGTCC

Downstream 100 bases:

>100_bases
ATGCTGGCCAGACTGAAACAATTGCGCGATTCGGATTTTCTGTATCACTTCGTACGCGACAAAATAGCGCTGACCAGCTT
CATCGTGGTTGCCGTGCTGG

Product: oligopeptide/dipeptide ABC transporter permease

Products: ADP; phosphate; dipeptides [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 391; Mature: 390

Protein sequence:

>391_residues
MSRSGPSGPLRFVQRRFVGKANNSCLLSPQSVFRTGAIRNRPKGRFPLVCQTANHSHLTLKPRKHSMIAFIVRRVTQALI
VMFVISFIGFAIKHSLGDPVREMVGVSVSVQEREALREQLGLNDPYLVQWGRFVKNAAQGDLGQSFFYRKPAMEVILDKA
PATLELVFCSTLLILLISTPVGVYAAYRPNSPLSRFFMGFSVVGVSIPVFLTAILLIYIFAVELHWLPSYGRGETVTLFG
FWSTGLLTLDGLKHLILPSIALSSIMLPLFIRLIRAEMKEVLETEYVKFARAKGLRERRVLMVHAFKNTLLPVITVGGVQ
IGLMIAYTILTETVFQWQGMGFMFIEAVERSDTALLVAYMVFVGALFVVVNTVVDIIYGLVNPMVRVAGRK

Sequences:

>Translated_391_residues
MSRSGPSGPLRFVQRRFVGKANNSCLLSPQSVFRTGAIRNRPKGRFPLVCQTANHSHLTLKPRKHSMIAFIVRRVTQALI
VMFVISFIGFAIKHSLGDPVREMVGVSVSVQEREALREQLGLNDPYLVQWGRFVKNAAQGDLGQSFFYRKPAMEVILDKA
PATLELVFCSTLLILLISTPVGVYAAYRPNSPLSRFFMGFSVVGVSIPVFLTAILLIYIFAVELHWLPSYGRGETVTLFG
FWSTGLLTLDGLKHLILPSIALSSIMLPLFIRLIRAEMKEVLETEYVKFARAKGLRERRVLMVHAFKNTLLPVITVGGVQ
IGLMIAYTILTETVFQWQGMGFMFIEAVERSDTALLVAYMVFVGALFVVVNTVVDIIYGLVNPMVRVAGRK
>Mature_390_residues
SRSGPSGPLRFVQRRFVGKANNSCLLSPQSVFRTGAIRNRPKGRFPLVCQTANHSHLTLKPRKHSMIAFIVRRVTQALIV
MFVISFIGFAIKHSLGDPVREMVGVSVSVQEREALREQLGLNDPYLVQWGRFVKNAAQGDLGQSFFYRKPAMEVILDKAP
ATLELVFCSTLLILLISTPVGVYAAYRPNSPLSRFFMGFSVVGVSIPVFLTAILLIYIFAVELHWLPSYGRGETVTLFGF
WSTGLLTLDGLKHLILPSIALSSIMLPLFIRLIRAEMKEVLETEYVKFARAKGLRERRVLMVHAFKNTLLPVITVGGVQI
GLMIAYTILTETVFQWQGMGFMFIEAVERSDTALLVAYMVFVGALFVVVNTVVDIIYGLVNPMVRVAGRK

Specific function: Part of the binding-protein-dependent transport system for dipeptides; probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0601

COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport systems, permease components

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1789965, Length=336, Percent_Identity=36.0119047619048, Blast_Score=204, Evalue=7e-54,
Organism=Escherichia coli, GI1787053, Length=321, Percent_Identity=32.7102803738318, Blast_Score=194, Evalue=6e-51,
Organism=Escherichia coli, GI1787497, Length=322, Percent_Identity=31.6770186335404, Blast_Score=167, Evalue=2e-42,
Organism=Escherichia coli, GI1789888, Length=325, Percent_Identity=32.3076923076923, Blast_Score=164, Evalue=1e-41,
Organism=Escherichia coli, GI1787761, Length=304, Percent_Identity=33.8815789473684, Blast_Score=141, Evalue=7e-35,
Organism=Escherichia coli, GI1787550, Length=333, Percent_Identity=28.8288288288288, Blast_Score=125, Evalue=6e-30,
Organism=Escherichia coli, GI1788504, Length=286, Percent_Identity=27.972027972028, Blast_Score=100, Evalue=2e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 43646; Mature: 43514

Theoretical pI: Translated: 10.73; Mature: 10.73

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSRSGPSGPLRFVQRRFVGKANNSCLLSPQSVFRTGAIRNRPKGRFPLVCQTANHSHLTL
CCCCCCCCHHHHHHHHHHCCCCCCEEECHHHHHHHCCCCCCCCCCCCEEEECCCCCEEEE
KPRKHSMIAFIVRRVTQALIVMFVISFIGFAIKHSLGDPVREMVGVSVSVQEREALREQL
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCHHHHHHHHHHH
GLNDPYLVQWGRFVKNAAQGDLGQSFFYRKPAMEVILDKAPATLELVFCSTLLILLISTP
CCCCCHHHHHHHHHHHHHCCCCCHHHHHCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHCC
VGVYAAYRPNSPLSRFFMGFSVVGVSIPVFLTAILLIYIFAVELHWLPSYGRGETVTLFG
HHEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEE
FWSTGLLTLDGLKHLILPSIALSSIMLPLFIRLIRAEMKEVLETEYVKFARAKGLRERRV
ECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
LMVHAFKNTLLPVITVGGVQIGLMIAYTILTETVFQWQGMGFMFIEAVERSDTALLVAYM
HHHHHHHHHHHHHEEECCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHH
VFVGALFVVVNTVVDIIYGLVNPMVRVAGRK
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
SRSGPSGPLRFVQRRFVGKANNSCLLSPQSVFRTGAIRNRPKGRFPLVCQTANHSHLTL
CCCCCCCHHHHHHHHHHCCCCCCEEECHHHHHHHCCCCCCCCCCCCEEEECCCCCEEEE
KPRKHSMIAFIVRRVTQALIVMFVISFIGFAIKHSLGDPVREMVGVSVSVQEREALREQL
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCHHHHHHHHHHH
GLNDPYLVQWGRFVKNAAQGDLGQSFFYRKPAMEVILDKAPATLELVFCSTLLILLISTP
CCCCCHHHHHHHHHHHHHCCCCCHHHHHCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHCC
VGVYAAYRPNSPLSRFFMGFSVVGVSIPVFLTAILLIYIFAVELHWLPSYGRGETVTLFG
HHEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEE
FWSTGLLTLDGLKHLILPSIALSSIMLPLFIRLIRAEMKEVLETEYVKFARAKGLRERRV
ECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
LMVHAFKNTLLPVITVGGVQIGLMIAYTILTETVFQWQGMGFMFIEAVERSDTALLVAYM
HHHHHHHHHHHHHEEECCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHH
VFVGALFVVVNTVVDIIYGLVNPMVRVAGRK
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; dipeptides [Periplasm]; H2O [C]

Specific reaction: ATP + dipeptides [Periplasm] + H2O = ADP + phosphate + dipeptides [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9680333 [H]