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The map label for this gene is ymdB [H]

Identifier: 78355276

GI number: 78355276

Start: 215102

End: 215881

Strand: Reverse

Name: ymdB [H]

Synonym: Dde_0229

Alternate gene names: 78355276

Gene position: 215881-215102 (Counterclockwise)

Preceding gene: 78355277

Following gene: 78355275

Centisome position: 5.79

GC content: 60.38

Gene sequence:

>780_bases
ATGCGTATACTCATGCTGGGCGACGTGGTGGGCAAGCCGGGCAGACTGGCCCTGCGCGAACATCTGCCGCCGCTGATCAG
CCGGTGCGGTGCAGACTTCACCGTGGTCAACGGAGAAAACGCCTCCGGCGGCATCGGCCTTACCGGCGAAGGTTTTTCGG
CACTTGCCGCGGCCGGTGCCGATGTGGTCACATCGGGCAACCACATATGGAAACACAAAGAAATTTATGCAGTGCTGGGC
CGTGAGGAGCGCCTCATACGTCCCGCCAACTATCCTGCAGGCGCTCCGGGCAACGGGCTGACCGTCCGGCAGAGCGCGGA
CGGGCACAAAATAGCCGTCATCAACCTGCTGGGCAGAACATTCATGGAAGCTGTGGACTGCCCTTTTCAGTGCGCAGAGA
CGCTGCTGGCATCGCTGCCCGGCGATGTCGTCATACGCCTGCTGGACTTTCACGCCGAGGCCACCAGTGAAAAAAAAGCC
ATGGGCTGGTATCTGGACGGCCGCATAACCGTGCTGGGCGGCACGCATACCCATGTGCAGACCAACGACGCACAGATTCT
GCCGCAGGGCACCGCATATATGACCGACCTTGGCATGTGCGGTGTGGAAAGCTCTGTTCTGGGTATGGATCATGCCTGCA
TTGTGGAAAAAATGGTCACCAGGCTGCCCCGCCGGTTTGTACCGGCCAAGGGCCGCGGCGGTCTGAACGGACTGCTGACG
GAACTGGACCCCGCCACAGGCAAAGCCGTGCAGGTTGAAATTATACGCATTGAACCGTAA

Upstream 100 bases:

>100_bases
CCATGCTGCAGGCACACGGTGTCGTGCGCATACCGGCACACAGCGAAGGGCTGGACAGCGGTACGCAAGTGGATGTGCTG
CTTTTCGGAGGCGGATACTG

Downstream 100 bases:

>100_bases
AAGCGTGCTGATGCGGGGCAGGTGCGCGGCAGACGGCGTCTTTGACATCAGTGCCGTTCTCTGCAACACCAGCCCGATCA
AATACAACTACATGGAAGTG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 259; Mature: 259

Protein sequence:

>259_residues
MRILMLGDVVGKPGRLALREHLPPLISRCGADFTVVNGENASGGIGLTGEGFSALAAAGADVVTSGNHIWKHKEIYAVLG
REERLIRPANYPAGAPGNGLTVRQSADGHKIAVINLLGRTFMEAVDCPFQCAETLLASLPGDVVIRLLDFHAEATSEKKA
MGWYLDGRITVLGGTHTHVQTNDAQILPQGTAYMTDLGMCGVESSVLGMDHACIVEKMVTRLPRRFVPAKGRGGLNGLLT
ELDPATGKAVQVEIIRIEP

Sequences:

>Translated_259_residues
MRILMLGDVVGKPGRLALREHLPPLISRCGADFTVVNGENASGGIGLTGEGFSALAAAGADVVTSGNHIWKHKEIYAVLG
REERLIRPANYPAGAPGNGLTVRQSADGHKIAVINLLGRTFMEAVDCPFQCAETLLASLPGDVVIRLLDFHAEATSEKKA
MGWYLDGRITVLGGTHTHVQTNDAQILPQGTAYMTDLGMCGVESSVLGMDHACIVEKMVTRLPRRFVPAKGRGGLNGLLT
ELDPATGKAVQVEIIRIEP
>Mature_259_residues
MRILMLGDVVGKPGRLALREHLPPLISRCGADFTVVNGENASGGIGLTGEGFSALAAAGADVVTSGNHIWKHKEIYAVLG
REERLIRPANYPAGAPGNGLTVRQSADGHKIAVINLLGRTFMEAVDCPFQCAETLLASLPGDVVIRLLDFHAEATSEKKA
MGWYLDGRITVLGGTHTHVQTNDAQILPQGTAYMTDLGMCGVESSVLGMDHACIVEKMVTRLPRRFVPAKGRGGLNGLLT
ELDPATGKAVQVEIIRIEP

Specific function: Unknown

COG id: COG1692

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005235 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 27526; Mature: 27526

Theoretical pI: Translated: 6.94; Mature: 6.94

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRILMLGDVVGKPGRLALREHLPPLISRCGADFTVVNGENASGGIGLTGEGFSALAAAGA
CEEEEEECCCCCCCCHHHHHCCHHHHHHCCCCEEEEECCCCCCCEEECCCCHHHHHHCCC
DVVTSGNHIWKHKEIYAVLGREERLIRPANYPAGAPGNGLTVRQSADGHKIAVINLLGRT
CEEECCCEEEEHHHEEEEECCCCCEECCCCCCCCCCCCCEEEEECCCCCEEEEHHHHHHH
FMEAVDCPFQCAETLLASLPGDVVIRLLDFHAEATSEKKAMGWYLDGRITVLGGTHTHVQ
HHHHHCCCHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCEEEECCEEEEEECCEEEEE
TNDAQILPQGTAYMTDLGMCGVESSVLGMDHACIVEKMVTRLPRRFVPAKGRGGLNGLLT
CCCCEEEECCCHHHHHCCCCCCCHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHH
ELDPATGKAVQVEIIRIEP
HCCCCCCCEEEEEEEEECC
>Mature Secondary Structure
MRILMLGDVVGKPGRLALREHLPPLISRCGADFTVVNGENASGGIGLTGEGFSALAAAGA
CEEEEEECCCCCCCCHHHHHCCHHHHHHCCCCEEEEECCCCCCCEEECCCCHHHHHHCCC
DVVTSGNHIWKHKEIYAVLGREERLIRPANYPAGAPGNGLTVRQSADGHKIAVINLLGRT
CEEECCCEEEEHHHEEEEECCCCCEECCCCCCCCCCCCCEEEEECCCCCEEEEHHHHHHH
FMEAVDCPFQCAETLLASLPGDVVIRLLDFHAEATSEKKAMGWYLDGRITVLGGTHTHVQ
HHHHHCCCHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCEEEECCEEEEEECCEEEEE
TNDAQILPQGTAYMTDLGMCGVESSVLGMDHACIVEKMVTRLPRRFVPAKGRGGLNGLLT
CCCCEEEECCCHHHHHCCCCCCCHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHH
ELDPATGKAVQVEIIRIEP
HCCCCCCCEEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]