| Definition | Desulfovibrio desulfuricans subsp. desulfuricans str. G20 chromosome, complete genome. |
|---|---|
| Accession | NC_007519 |
| Length | 3,730,232 |
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The map label for this gene is bfr [H]
Identifier: 78355180
GI number: 78355180
Start: 124731
End: 125270
Strand: Reverse
Name: bfr [H]
Synonym: Dde_0133
Alternate gene names: 78355180
Gene position: 125270-124731 (Counterclockwise)
Preceding gene: 78355182
Following gene: 78355179
Centisome position: 3.36
GC content: 52.41
Gene sequence:
>540_bases ATGACCGCATCAGGAAGAGAAGAAAGACGCGCCAATGTCATTGAAGTTCTGAACAAGGCCCGCGCCATGGAGCTTCAGGC CATTCACCAGTACATGAACCAGCACTACGGGCTGGACGATATGGACTACGGCGAAATGGCAGGCAAAATGAAGCTGATCG CCATTGACGAAATGCGCCATGCGGAAGCCTTTGCCGAGCGCATTAAAGAACTGGGCGGAGAACCCGTGACAGACTATCCC GGCACCATTGAAAAGCGTCAGGATGTTAAAAAAATCTATGCCTTCGACACCGACCTCGAAGACGATACCATTGATGCTTA CAACCAGTTTCTGCAGGTCTGTCGCGAAAACGGCGACAGCATCAGCGCCAAACTGTTTGAGACCATCATTGAGGAAGAGC AGCTGCACCTGAGCTACTTTGACAATGAAAACAATCACATTGAAACTCTGGGCGATGCATATCTTTCGCGTATTGCCGGA ACCCCCTCGTCCACGGGACTTACCCCGCAGGGCTTTGCCGTGGCCAAGGGCGGCGCATAA
Upstream 100 bases:
>100_bases CAGCCCGTCGGCTGGGCGCAAAGTCCGTAACCGGATATGTCACGGGCGGACGGCCACACAGCACGACGTTGTTCCGTCAG CAAACTCAAGAGAGGTATTC
Downstream 100 bases:
>100_bases CAGCACCCGCACCGGTCATCAGGGAGCAGGAACTATCCTGCTCCTTTTTTTTGTCCCCCGTCTCAGTCAGCCGGTTGTAA TGATCGGGTCGTAATGCTCG
Product: bacterioferritin
Products: NA
Alternate protein names: BFR [H]
Number of amino acids: Translated: 179; Mature: 178
Protein sequence:
>179_residues MTASGREERRANVIEVLNKARAMELQAIHQYMNQHYGLDDMDYGEMAGKMKLIAIDEMRHAEAFAERIKELGGEPVTDYP GTIEKRQDVKKIYAFDTDLEDDTIDAYNQFLQVCRENGDSISAKLFETIIEEEQLHLSYFDNENNHIETLGDAYLSRIAG TPSSTGLTPQGFAVAKGGA
Sequences:
>Translated_179_residues MTASGREERRANVIEVLNKARAMELQAIHQYMNQHYGLDDMDYGEMAGKMKLIAIDEMRHAEAFAERIKELGGEPVTDYP GTIEKRQDVKKIYAFDTDLEDDTIDAYNQFLQVCRENGDSISAKLFETIIEEEQLHLSYFDNENNHIETLGDAYLSRIAG TPSSTGLTPQGFAVAKGGA >Mature_178_residues TASGREERRANVIEVLNKARAMELQAIHQYMNQHYGLDDMDYGEMAGKMKLIAIDEMRHAEAFAERIKELGGEPVTDYPG TIEKRQDVKKIYAFDTDLEDDTIDAYNQFLQVCRENGDSISAKLFETIIEEEQLHLSYFDNENNHIETLGDAYLSRIAGT PSSTGLTPQGFAVAKGGA
Specific function: May perform analogous functions in iron detoxification and storage to that of animal ferritins [H]
COG id: COG2193
COG function: function code P; Bacterioferritin (cytochrome b1)
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ferritin-like diiron domain [H]
Homologues:
None
Paralogues:
None
Copy number: 1639 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002024 - InterPro: IPR009040 - InterPro: IPR012347 - InterPro: IPR009078 - InterPro: IPR008331 [H]
Pfam domain/function: PF00210 Ferritin [H]
EC number: NA
Molecular weight: Translated: 20100; Mature: 19968
Theoretical pI: Translated: 4.39; Mature: 4.39
Prosite motif: PS50905 FERRITIN_LIKE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 3.9 %Met (Translated Protein) 4.5 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 3.4 %Met (Mature Protein) 3.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTASGREERRANVIEVLNKARAMELQAIHQYMNQHYGLDDMDYGEMAGKMKLIAIDEMRH CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHCCEEEEEHHHHHH AEAFAERIKELGGEPVTDYPGTIEKRQDVKKIYAFDTDLEDDTIDAYNQFLQVCRENGDS HHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCC ISAKLFETIIEEEQLHLSYFDNENNHIETLGDAYLSRIAGTPSSTGLTPQGFAVAKGGA HHHHHHHHHHHHHHHHHEEECCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCEECCCCC >Mature Secondary Structure TASGREERRANVIEVLNKARAMELQAIHQYMNQHYGLDDMDYGEMAGKMKLIAIDEMRH CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHCCEEEEEHHHHHH AEAFAERIKELGGEPVTDYPGTIEKRQDVKKIYAFDTDLEDDTIDAYNQFLQVCRENGDS HHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCC ISAKLFETIIEEEQLHLSYFDNENNHIETLGDAYLSRIAGTPSSTGLTPQGFAVAKGGA HHHHHHHHHHHHHHHHHEEECCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCEECCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: Fe [C]
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 11454214; 10841764; 11034331; 11173495; 12627224 [H]