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The map label for this gene is ycgR [H]

Identifier: 78355179

GI number: 78355179

Start: 123239

End: 124447

Strand: Reverse

Name: ycgR [H]

Synonym: Dde_0132

Alternate gene names: 78355179

Gene position: 124447-123239 (Counterclockwise)

Preceding gene: 78355180

Following gene: 78355178

Centisome position: 3.34

GC content: 62.37

Gene sequence:

>1209_bases
ATGTCTGAACTTTTAGCCCGCTACGCATTCGCCGTATGGGACATCCTGCTGGACGCATCACCCTATGTGCTGCTGGGTTT
TTTTGTGGCCGGTCTGCTTAAAGCTTATCTGCCAGAAGATCTGGTGGCGCGCCATCTGGGAAAAGGGCGCTTTCTTCCGG
TGCTCAAAGCGTCGCTTTTCGGGGTGCCTCTGCCTTTATGCTCATGCGGAGTTATTCCCGCCGCTGCCGGGCTGCGCCAG
CAGGGAGCAAGCCGCGGCGCCACCACATCGTTTCTGATTTCCACGCCGGAAACCGGCGTTGACTCCATAGCCGTCAGCTA
CGCACTGCTGGACCCCGTCATGGCGGTTGTCCGGCCGGTGGCCTCGTTTTTCACGGCCATCATCGCCGGAGTGGCGGTAA
ACAGCCTGCCGGAGGAAGAATCCCCTCAGGCGGCTTCATCAGCGGCCGCTGCCACCGCAGCGGCACATCAGGGCTGCAGC
TGCGGCCCGCATGCCGGAACAGAACACACTCACGGTATTATGCCCGCACCGGTTGTGCTTCCCGCCGCGGAGCACGCAGC
ATCTGCGGGTTGCGGCTGCGGGTCGTGCGGACATGACGGCCCCGCCCCCCGCACCATGCGGGAAAAATTCGTCAGCGGCA
TGCGGTTCGGCTTCGGCGAACTGGTTGCGGACATCGGCAAATGGCTCATGGTGGGTATTCTGCTGGCTGCCGTCATCACC
ACGCTTATTCCCGACACATTTTTTGCCAGCTATCTTGGTGACGGCCTTATGAGCATGCTGGTCATGCTGGTGGTGGGTAT
GCCCCTGTATGTCTGCGCCACCGCCTCAACCCCCGTGGCTGCGGCCATGGCCGTCAAAGGACTTTCACCCGGTGCCGCGC
TGGTCTTTCTGCTGGCAGGGCCGGCGACCAACGCGGCGACTTTCACGGTCGTTGCCAGACTGATGGGCCGCAAGGTTGCC
GCCGTGTATCTGGCCAGCATCGCGGTATGTTCCATTGCACTCGGTCTGGCGGTAAACTGGCTGTATGCCTATCTGGGACT
CAGCATCACTTCATGGGTGGGGGCCGCACAAGAAGAATCACACGGCGTTATCGCCATTGCTTCCGCGGTGGTGTTGCTGG
GGCTGGTGGCCTACCGCACCCTGCCCGGAATCATCCGGCGGGGGCACAACGCGCACGGGCACAGCCACGGGTGCTCATGC
GGGCACTAG

Upstream 100 bases:

>100_bases
ACCACTGTCTTGACAAGTGCATAGCCGGGGCGTATTTTTCATATGAACGATTGCTCATATGTATGTTTGTTCATAAAACA
CACGCCTCACGGGAGGAACC

Downstream 100 bases:

>100_bases
CCGCCCTGCATCACGGCCGTCCTCTTTTCTGAATACACTGCGCCCCGCTTCACCGGCGGGGCGCTTTTATTGCGCCGGCA
CATACCGGCGCGTGCCGTCA

Product: permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 402; Mature: 401

Protein sequence:

>402_residues
MSELLARYAFAVWDILLDASPYVLLGFFVAGLLKAYLPEDLVARHLGKGRFLPVLKASLFGVPLPLCSCGVIPAAAGLRQ
QGASRGATTSFLISTPETGVDSIAVSYALLDPVMAVVRPVASFFTAIIAGVAVNSLPEEESPQAASSAAAATAAAHQGCS
CGPHAGTEHTHGIMPAPVVLPAAEHAASAGCGCGSCGHDGPAPRTMREKFVSGMRFGFGELVADIGKWLMVGILLAAVIT
TLIPDTFFASYLGDGLMSMLVMLVVGMPLYVCATASTPVAAAMAVKGLSPGAALVFLLAGPATNAATFTVVARLMGRKVA
AVYLASIAVCSIALGLAVNWLYAYLGLSITSWVGAAQEESHGVIAIASAVVLLGLVAYRTLPGIIRRGHNAHGHSHGCSC
GH

Sequences:

>Translated_402_residues
MSELLARYAFAVWDILLDASPYVLLGFFVAGLLKAYLPEDLVARHLGKGRFLPVLKASLFGVPLPLCSCGVIPAAAGLRQ
QGASRGATTSFLISTPETGVDSIAVSYALLDPVMAVVRPVASFFTAIIAGVAVNSLPEEESPQAASSAAAATAAAHQGCS
CGPHAGTEHTHGIMPAPVVLPAAEHAASAGCGCGSCGHDGPAPRTMREKFVSGMRFGFGELVADIGKWLMVGILLAAVIT
TLIPDTFFASYLGDGLMSMLVMLVVGMPLYVCATASTPVAAAMAVKGLSPGAALVFLLAGPATNAATFTVVARLMGRKVA
AVYLASIAVCSIALGLAVNWLYAYLGLSITSWVGAAQEESHGVIAIASAVVLLGLVAYRTLPGIIRRGHNAHGHSHGCSC
GH
>Mature_401_residues
SELLARYAFAVWDILLDASPYVLLGFFVAGLLKAYLPEDLVARHLGKGRFLPVLKASLFGVPLPLCSCGVIPAAAGLRQQ
GASRGATTSFLISTPETGVDSIAVSYALLDPVMAVVRPVASFFTAIIAGVAVNSLPEEESPQAASSAAAATAAAHQGCSC
GPHAGTEHTHGIMPAPVVLPAAEHAASAGCGCGSCGHDGPAPRTMREKFVSGMRFGFGELVADIGKWLMVGILLAAVITT
LIPDTFFASYLGDGLMSMLVMLVVGMPLYVCATASTPVAAAMAVKGLSPGAALVFLLAGPATNAATFTVVARLMGRKVAA
VYLASIAVCSIALGLAVNWLYAYLGLSITSWVGAAQEESHGVIAIASAVVLLGLVAYRTLPGIIRRGHNAHGHSHGCSCG
H

Specific function: Unknown

COG id: COG0701

COG function: function code R; Predicted permeases

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0718 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005524 [H]

Pfam domain/function: PF03773 DUF318 [H]

EC number: NA

Molecular weight: Translated: 41079; Mature: 40947

Theoretical pI: Translated: 7.52; Mature: 7.52

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.7 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
5.7 %Cys+Met (Translated Protein)
2.7 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
5.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSELLARYAFAVWDILLDASPYVLLGFFVAGLLKAYLPEDLVARHLGKGRFLPVLKASLF
CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCHHHHHHHHH
GVPLPLCSCGVIPAAAGLRQQGASRGATTSFLISTPETGVDSIAVSYALLDPVMAVVRPV
CCCHHHHHCCCHHHHHHHHHHCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHH
ASFFTAIIAGVAVNSLPEEESPQAASSAAAATAAAHQGCSCGPHAGTEHTHGIMPAPVVL
HHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC
PAAEHAASAGCGCGSCGHDGPAPRTMREKFVSGMRFGFGELVADIGKWLMVGILLAAVIT
CCHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH
TLIPDTFFASYLGDGLMSMLVMLVVGMPLYVCATASTPVAAAMAVKGLSPGAALVFLLAG
HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCHHHHHHHHHCCCCCHHEEEEEEC
PATNAATFTVVARLMGRKVAAVYLASIAVCSIALGLAVNWLYAYLGLSITSWVGAAQEES
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
HGVIAIASAVVLLGLVAYRTLPGIIRRGHNAHGHSHGCSCGH
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
SELLARYAFAVWDILLDASPYVLLGFFVAGLLKAYLPEDLVARHLGKGRFLPVLKASLF
HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCHHHHHHHHH
GVPLPLCSCGVIPAAAGLRQQGASRGATTSFLISTPETGVDSIAVSYALLDPVMAVVRPV
CCCHHHHHCCCHHHHHHHHHHCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHH
ASFFTAIIAGVAVNSLPEEESPQAASSAAAATAAAHQGCSCGPHAGTEHTHGIMPAPVVL
HHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC
PAAEHAASAGCGCGSCGHDGPAPRTMREKFVSGMRFGFGELVADIGKWLMVGILLAAVIT
CCHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH
TLIPDTFFASYLGDGLMSMLVMLVVGMPLYVCATASTPVAAAMAVKGLSPGAALVFLLAG
HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCHHHHHHHHHCCCCCHHEEEEEEC
PATNAATFTVVARLMGRKVAAVYLASIAVCSIALGLAVNWLYAYLGLSITSWVGAAQEES
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
HGVIAIASAVVLLGLVAYRTLPGIIRRGHNAHGHSHGCSCGH
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8969502; 9384377 [H]