Click here to switch to the map view.

The map label for this gene is ybgF [H]

Identifier: 78224725

GI number: 78224725

Start: 3975210

End: 3976025

Strand: Direct

Name: ybgF [H]

Synonym: Gmet_3542

Alternate gene names: 78224725

Gene position: 3975210-3976025 (Clockwise)

Preceding gene: 78224724

Following gene: 78224727

Centisome position: 99.44

GC content: 61.76

Gene sequence:

>816_bases
ATGAACATCGTACGGAATATATCGCTCGTCGTGCTGCTGGCCCTGTCGGGATGCGCCATGCGCAGCGACCTGGAGACGGT
GCAACGGGACAACGAGGAACTGAAGACCCGCATCTTCCGCCTTGAGAAGGACCTGGGAGGGGTGCGGACGGAGACCAGGG
CCGGCATCGAGACAACCTTGCAGGACTTCGAGAAGGAGCGGGCCGGCGCCCGTAAGGGGCTCGCGGACCTCCAAGCATCC
ATGGACGCCATGAAGGTTGACCTCCAGGTAATGGCCGGGAAGGTGGACGACCTCTCCCTGGCCGCCAAGAAGCCGACCGA
GGAGGTGAATCTCCTCAAGGAAGACCTGGAACGGCGCCTTTCCTCCCTGGAGGAAAGGCTAGGAGCGGTGCAGAAGAAGG
TGACGGACATGGAAACGGCCCAGGCCAAGCCCCCCGAGCCTGCGACTCCCGAAGCCCTTTACCAGAAGGGGCTCGACGCC
TACCGGAGCGGCAATTTCGCTGCGGCCCGGGAGTCATTTGCCCGCTTCCTGGAACAGCACCCGAAGCACGAACTTGCGGT
CAACGCCCACTACTGGTCCGGCGAGGCCTACTACGGCGAAAAGAAATACGAACAGGCAATCCTGGAATTCCAGGAGGTGA
TCAAAAATTTCCCCGGCAAGGAAAAGGTACCTGCGGCCATGCTGAAACAGGCCGGGGCCTTCAACGAGATCGGCGACGTG
AAGAGCGCCCGTTACGTGCTGCGGAAACTCATCGACGAGCACCCCTCCACCGAGGAGGCGAGGCGGGCCAAGGAGAGGCT
CAAGGCCCTCAAATAA

Upstream 100 bases:

>100_bases
AATTCCTCATTGTCAAATAAAACCATCGTCCGGGAAAACGGGAGGGGAGCCGGCAACGGCTCCCTTTCTCTATTGCCGGG
CAACAACTACGGAGACGCCG

Downstream 100 bases:

>100_bases
CAAAAGGCGGGTGCAAGCCCGCCTTTTTCATTTCCGACATCTCGTATCAGGCCGTCTCAAGCCGACTTCGCCCCGTCGCC
TCCCCTGGACGCAGTCTCTG

Product: TPR repeat-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 271; Mature: 271

Protein sequence:

>271_residues
MNIVRNISLVVLLALSGCAMRSDLETVQRDNEELKTRIFRLEKDLGGVRTETRAGIETTLQDFEKERAGARKGLADLQAS
MDAMKVDLQVMAGKVDDLSLAAKKPTEEVNLLKEDLERRLSSLEERLGAVQKKVTDMETAQAKPPEPATPEALYQKGLDA
YRSGNFAAARESFARFLEQHPKHELAVNAHYWSGEAYYGEKKYEQAILEFQEVIKNFPGKEKVPAAMLKQAGAFNEIGDV
KSARYVLRKLIDEHPSTEEARRAKERLKALK

Sequences:

>Translated_271_residues
MNIVRNISLVVLLALSGCAMRSDLETVQRDNEELKTRIFRLEKDLGGVRTETRAGIETTLQDFEKERAGARKGLADLQAS
MDAMKVDLQVMAGKVDDLSLAAKKPTEEVNLLKEDLERRLSSLEERLGAVQKKVTDMETAQAKPPEPATPEALYQKGLDA
YRSGNFAAARESFARFLEQHPKHELAVNAHYWSGEAYYGEKKYEQAILEFQEVIKNFPGKEKVPAAMLKQAGAFNEIGDV
KSARYVLRKLIDEHPSTEEARRAKERLKALK
>Mature_271_residues
MNIVRNISLVVLLALSGCAMRSDLETVQRDNEELKTRIFRLEKDLGGVRTETRAGIETTLQDFEKERAGARKGLADLQAS
MDAMKVDLQVMAGKVDDLSLAAKKPTEEVNLLKEDLERRLSSLEERLGAVQKKVTDMETAQAKPPEPATPEALYQKGLDA
YRSGNFAAARESFARFLEQHPKHELAVNAHYWSGEAYYGEKKYEQAILEFQEVIKNFPGKEKVPAAMLKQAGAFNEIGDV
KSARYVLRKLIDEHPSTEEARRAKERLKALK

Specific function: Unknown

COG id: COG1729

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1786963, Length=99, Percent_Identity=32.3232323232323, Blast_Score=71, Evalue=8e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014162
- InterPro:   IPR013026
- InterPro:   IPR011990 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 30477; Mature: 30477

Theoretical pI: Translated: 7.66; Mature: 7.66

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS50005 TPR ; PS50293 TPR_REGION

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNIVRNISLVVLLALSGCAMRSDLETVQRDNEELKTRIFRLEKDLGGVRTETRAGIETTL
CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
QDFEKERAGARKGLADLQASMDAMKVDLQVMAGKVDDLSLAAKKPTEEVNLLKEDLERRL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCHHHHHHHHHHHHHHH
SSLEERLGAVQKKVTDMETAQAKPPEPATPEALYQKGLDAYRSGNFAAARESFARFLEQH
HHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
PKHELAVNAHYWSGEAYYGEKKYEQAILEFQEVIKNFPGKEKVPAAMLKQAGAFNEIGDV
CCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHH
KSARYVLRKLIDEHPSTEEARRAKERLKALK
HHHHHHHHHHHHCCCCHHHHHHHHHHHHHCC
>Mature Secondary Structure
MNIVRNISLVVLLALSGCAMRSDLETVQRDNEELKTRIFRLEKDLGGVRTETRAGIETTL
CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
QDFEKERAGARKGLADLQASMDAMKVDLQVMAGKVDDLSLAAKKPTEEVNLLKEDLERRL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCHHHHHHHHHHHHHHH
SSLEERLGAVQKKVTDMETAQAKPPEPATPEALYQKGLDAYRSGNFAAARESFARFLEQH
HHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
PKHELAVNAHYWSGEAYYGEKKYEQAILEFQEVIKNFPGKEKVPAAMLKQAGAFNEIGDV
CCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHH
KSARYVLRKLIDEHPSTEEARRAKERLKALK
HHHHHHHHHHHHCCCCHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1574003; 8905232; 9278503; 7567469 [H]